Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. A1 Journal article-refereed
  2. Published

    Introducing Fault-Tolerance to Multiple-Valued Logic with Error-Correcting Decision Diagrams

    Astola, H., Stankovic, S. & Astola, J., 2014, In : Journal of Multiple-Valued Logic and Soft Computing. 23, 5-6, p. 441-461 20 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Quantitative analysis of colony morphology in yeast

    Ruusuvuori, P., Lin, J., Scott, A., Tan, Z., Sorsa, S., Kallio, A., Nykter, M., Yli-Harja, O., Shmulevich, I. & Dudley, A., 2014, In : BioTechniques. 56, 1, p. 18-27 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    POMO - Plotting Omics analysis results for Multiple Organisms

    Lin, J., Kreisberg, R., Kallio, A., Dudley, A. M., Nykter, M., Shmulevich, I., May, P. & Autio, R., 2014, In : BMC Genomics. 14, p. 1-10 10 p., 918.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Estimation of fluorescence-tagged RNA numbers from spot intensities

    Häkkinen, A., Kandhavelu, M., Garasto, S. & Ribeiro, A. S., 2014, In : Bioinformatics. 30, 8, p. 1146-1153 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Nonlinear phenomena in Petrel sounds

    Tanttu, J. T., Turunen, J. & Kumpumäki, T., 2014, In : Bioacoustics: the International Journal of Animal Sound and Its Recording. 23, 3, p. 219-230 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Quantifying the importance of cyclopean view and binocular rivalry-related features for objective quality assessment of mobile 3D video

    Jin, L., Boev, A., Egiazarian, K. & Gotchev, A., 2014, In : Eurasip Journal on Image and Video Processing. January, p. 1-7 7 p., 6.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Difference of gaussians revolved along elliptical paths for ultrasound fetal head segmentation

    Foi, A., Maggioni, M., Pepe, A., Rueda, S., Noble, A. J., Papageorghiou, A. T. & Tohka, J., 2014, In : Computerized Medical Imaging and Graphics. 38, 8, p. 774-784 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Quantification of Dynamic Morphological Drug Responses in 3D Organotypic Cell Cultures by Automated Image Analysis

    Härmä, V., Schkov, H-P., Happonen, A., Ahonen, I., Virtanen, J., Siitari, H., Åkerfelt, M., Lötjönen, J. & Nees, M., 2014, In : PLoS ONE. May, 8, p. 1-11 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    DOT1L -HES6 fusion drives androgen independent growth in prostate cancer

    Annala, M., Kivinummi, K., Leinonen, K., Tuominen, J., Zhang, W., Visakorpi, T. & Nykter, M., 2014, In : EMBO Molecular Medicine. 6, p. 1121-1123 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    In Vivo Kinetics of Segregation and Polar Retention of MS2-GFP-RNA Complexes in Escherichia coli

    Gupta, A., Lloyd-Price, J., Neeli-Venkata, R., Oliveira, S. M. D. & Ribeiro, A. S., 2014, In : Biophysical Journal. 106, 9, p. 1928-1937 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Differential Coding Using Enhanced Inter-Layer Reference Picture for the Scalable Extension of H.265/HEVC Video Codec

    Aminlou, A., Lainema, J., Ugur, K., Hannuksela, M. M. & Gabbouj, M., 2014, In : IEEE Transactions on Circuits and Systems for Video Technology. 24, 11, p. 1945-1956 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Integrated model-in-the-loop simulations to model-driven development in industrial control

    Vepsäläinen, T. & Kuikka, S., 2014, In : Simulation: Transactions of the Society for Modeling and Simulation International. 90, 12, p. 1295-1311 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Serum metabolic profiles in overweight and obese women with and without metabolic syndrome

    Wiklund, P. K., Pekkala, S., Autio, R., Munukka, E., Xu, L., Saltevo, J., Cheng, S., Kujala, U. M., Alen, M. & Cheng, S., 2014, In : Diabetology and Metabolic Syndrome. 6, 9 p., 40.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    An automatic framework for quantitative validation of voxel based morphometry measures of anatomical brain asymmetry

    Pepe, A., Dinov, I. & Tohka, J., 2014, In : NeuroImage. 56 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Flow framework for analyzing the quality of educational games

    Kiili, K., Lainema, T., de Freitas, S. & Arnab, S., 2014, In : Entertainment Computing. p. 367-377 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    KNN classification of metallic targets using the magnetic polarisability tensor

    Makkonen, J., Marsh, L. A., Vihonen, J., Järvi, A., Armitage, D. W., Visa, A. & Peyton, A. J., 2014, In : Measurement Science and Technology. 25, 5, p. 1-9 9 p., 055105.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Quantum Biology on the Edge of Quantum Chaos

    Vattay, G., Kauffman, S. & Niiranen, S., 2014, In : PLoS ONE. 9, 3, p. 1-6 6 p., e89107.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Exemplar-Based Sparse representation with Residual Compensation for Voice Conversion

    Wu, Z., Virtanen, T., Chng, E. S. & Li, H., 2014, In : IEEE Transactions on Audio Speech and Language Processing. 22, 10, p. 1506-1521 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Screen for mitochondrial DNA copy number maintenance genes reveals essential role for ATP synthase

    Fukuoh, A., Cannino, G., Gerards, M., Buckley, S., Kazancioglu, S., Scialo, F., Lihavainen, E., Ribeiro, A., Dufour, E. & Jacobs, H. T., 2014, In : Molecular Systems Biology. 10, 734, p. 1-21 21 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    A new method for artefact-free estimation of surface slope from bathymetric lidar data

    Kumpumäki, T. & Lipping, T., 2014, In : EAR Se L eProceedings. 13, p. 1-5 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Denoising of two-photon fluorescence images with Block-Matching 3D filtering

    Danielyan, A., Wu, Y-W., Shih, P-S., Dembitskaya, Y. & Semyanov, A., 2014, In : Methods. 68, 2, p. 308-316 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Performance evaluation of IEEE 802.11p-enabled vehicular video surveillance system

    Bellalta, B., Belyaev, E., Jonsson, M. & Vinel, A., 2014, In : IEEE Communications Letters. 18, 4, p. 708-711 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Studying the User Experience of a Tablet Based Math Game

    Kiili, K., Ketamo, H., Koivisto, A. & Finn, E., 2014, In : International Journal of Game-Based Learning. 4, 1, p. 60-77 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Representation of Multiple-Valued Functions with Flat Vilenkin-Chrestenson Spectra by Decision Diagrams

    Stankovic, S., Stankovic, M. & Astola, J., 2014, In : Journal of Multiple-Valued Logic and Soft Computing. 23, 5-6, p. 485-501 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Flow Experience as a Quality Measure in Evaluating Physically Activating Collaborative Serious Games

    Kiili, K., Perttula, A., Lindstedt, A., Arnab, S. & Suominen, M., 2014, In : International Journal of Serious Games. 1, 3, p. 35-49 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Protein-protein interaction and coarse grained simulation study of Glioblastoma Multiforme reveals novel pathways of GPR17

    Mutharasu, G., Yli-harja, O. & Kandhavelu, M., 2014, In : TASK Quarterly. 18, 4, p. 321-325 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Mobile panoramic video applications for learning

    Multisilta, J., 2014, In : Education and Information Technologies. 19, 3, p. 655-666 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Emmerdale netissä: Ohjelmakohtaisten sivustojen käyttötarkoitukset osana katselukokemusta

    Tuomi, P., 2014, In : Tekniikan Waiheita: Teknik I Tiden. 4, 32, p. 23-31 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Bioprocess data mining using regularized regression and random forests

    Hassan, S. S., Farhan, M., Mangayil, R., Huttunen, H. & Aho, T., 12 Aug 2013, In : BMC Systems Biology. 7, Suppl 1, 7 p., 5.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Effects of multimerization on the temporal variability of protein complex abundance

    Häkkinen, A., Tran, H., Yli-Harja, O., Ingalls, B. & Ribeiro, A. S., 2013, In : BMC Systems Biology. 7, Suppl 1, 13 p., S3.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Structure-Dynamics Relationships in Bursting Neuronal Networks Revealed Using a Prediction Framework

    Mäki-Marttunen, T., Acimovic, J., Linne, M-L. & Ruohonen, K., 2013, In : PLoS ONE. 8, 7, p. 1-16 16 p., e69373.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Information Security Assessment of SMEs as Coursework - Learning Information Security Management by Doing

    Ilvonen, I., 2013, In : Journal of Information Systems Education. 24, 1, p. 53-59 57 p.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    On the applicability of capability models for small software organizations: does the use of standard processes lead to a better achievement of business goals?

    Suominen, M. & Mäkinen, T., 2013, In : Software Quality Journal. 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Comparison of Models for IP3 Receptor Kinetics Using Stochastic Simulations

    Hituri, K. & Linne, M-L., 2013, In : PLoS ONE. 8, 4, p. 1-13 13 p., e59618.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Multiview-Video-Plus-Depth Coding Based on the Advanced Video Coding Standard

    Hannuksela, M. M., Rusanovskyy, D., Su, W., Chen, L., Li, R., Aflaki, P., Lan, D., Joachimiak, M., Li, H. & Gabbouj, M., 2013, In : IEEE Transactions on Image Processing. 22, 9, p. 3449-3458 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Gene-pair expression signatures reveal lineage control

    Heinäniemi, M., Nykter, M., Kramer, R., Wienecke-Baldacchino, A., Sinkkonen, L., Zhou, J. X., Kreisberg, R., Kauffman, S. A., Huang, S. & Shmulevich, I., 2013, In : Nature Methods. 10, 6, p. 577-583 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Classification of ground moving targets using bicepstrum-based features extracted from Micro-Doppler radar signatures

    Molchanov, P. O., Astola, J. T., Egiazarian, K. O. & Totsky, A. V., 2013, In : Eurasip Journal on Advances in Signal Processing. 1, p. 1-13 13 p., 61.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Evaluation of methods for modeling transcription-factor sequence specificity

    Weirauch, M., Cote, A., Norel, R., Annala, M., Zhao, Y., Riley, T., Saez-Rodriguez, J., Cokelaer, T., Vedenko, A., Talukder, S., Bussemaker, H., Morris, Q., Bulyk, M., Stolovitzky, G., Hughes, T. & Nykter, M. DREAM. C., 2013, In : Nature Biotechnology. 31, 2, p. 126-134 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Diversifying higher education: facilitating different ways of learning

    Virtanen, P., Myllärniemi, J. & Wallander, H., 2013, In : Campus-Wide Information Systems. 30, 3, p. 201-211 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Mind reading with regularized multinomial logistic regression

    Huttunen, H., Manninen, T., Kauppi, J-P. & Tohka, J., 2013, In : Machine Vision and Applications. 24, 6, p. 1311-1325

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Sorad: A systems biology approach to predict and modulate dynamic signaling pathway response from phosphoproteome time-course measurements

    Äijö, T., Granberg, K. & Lähdesmäki, H., 2013, In : Bioinformatics. 29, 10, p. 1283-1291 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Genome Sequence of Halanaerobium saccharolyticum subsp. saccharolyticum Strain DSM 6643T, a Halophilic Hydrogen-Producing Bacterium

    Kivistö, A., Larjo, A., Ciranna, A., Santala, V., Roos, C. & Karp, M., 2013, In : Genome Announcements. 1, 2, p. 1-2 2 p.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Characterization of aberrant pathways across human cancers

    Ylipää, A., Yli-Harja, O., Zhang, W. & Nykter, M., 2013, In : BMC Systems Biology. 7, Supplement 1, p. 1-12 12 p., S1.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Loss of PTEN is associated with aggressive behavior in ERG-positive prostate cancer

    Leinonen, K. A., Saramäki, O. R., Furusato, B., Kimura, T., Takahashi, H., Egawa, S., Suzuki, H., Keiger, K., Hahm, S. H., Isaacs, W. B., Tolonen, T. T., Stenman, U-H., Tammela, T. L. J., Nykter, M., Bova, G. S. & Visakorpi, T., 2013, In : Cancer Epidemiology Biomarkers and Prevention. 22, 12, p. 2333-2344 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Short-term and long-term memory deficits in handedness learning in mice with absent corpus callosum and reduced hippocampal commissure

    Ribeiro, A. S., Eales, B. A. & Biddle, F. G., 2013, In : Behavioural Brain Research. 245, p. 145-151 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Moving the Science of Behavioral Change into the 21st Century

    Saranummi, N., Spruijit-Mertz, D., Intille, S. S., Korhonen, I., Nilsen, W. J. & Pavel, M., 2013, In : IEEE Pulse. 4, 5, p. 22-24 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Active-set newton algorithm for overcomplete non-negative representations of audio

    Virtanen, T., Gemmeke, J. F. & Raj, B., 2013, In : IEEE Transactions on Audio Speech and Language Processing. 21, 11, p. 2277-2289 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Bistability in a stochastic RNA-mediated gene network

    Lloyd-Price, J. & Ribeiro, A. S., 2013, In : Physical Review E. 88, 3, p. 1-8 8 p., 032714.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Designing for Music Discovery: Evaluation and Comparison of Five Music Player Prototypes

    Lehtiniemi, A. & Holm, J., 2013, In : Journal of New Music Research. 42, 3, p. 283-302 20 p.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    The tumorigenic FGFR3-TACC3 gene fusion escapes miR-99a regulation in glioblastoma

    Parker, C., Annala, M., Cogdell, D., Granberg, K., Sun, Y., Ji, P., Li, X., Gumin, J., Zheng, H., Hu, L., Yli-Harja, O., Haapasalo, H., Visakorpi, T., Liu, X., Liu, C., Sawaya, R., Fuller, G., Chen, K., Lang, F., Nykter, M. & Zhang, W., 2013, In : Journal of Clinical Investigation. 123, 2, p. 855-65 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

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