Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. A1 Journal article-refereed
  2. Published

    Lysophosphatidic acid and sphingosine-1-phosphate promote morphogenesis and block invasion of prostate cancer cells in three-dimensional organotypic models

    Härmä, V., Knuuttila, M., Virtanen, J., Mirtti, T., Kohonen, P., Kovanen, P., Happonen, A., Kaewphan, S., Ahonen, I., Kallioniemi, O., Grafström, R., Lötjönen, J. & Nees, M., 2011, In : Oncogene. 31, p. 2075-2089

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Psychological needs and virtual worlds: Case Second Life

    Partala, T., 2011, In : International Journal of Human-Computer Studies. 69, 12, p. 787-800

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Dynamics of genetic toggle switch at the nucleotide and codon levels

    Potapov, I., Lloyd-Price, J., Yli-Harja, O. & Ribeiro, A. S., 2011, In : Physical Review E. 84, 3, p. 1-9 9 p., 031903.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Modeling of Neuronal Growth In Vitro: Comparison of Simulation Tools NETMORPH and CX3D

    Acimovic, J., Mäki-Marttunen, T., Havela, R., Teppola, H. & Linne, M-L., 2011, In : Eurasip Journal on Bioinformatics and Systems Biology. 2011, p. 1-13 13 p., 616382.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Systems analysis identifies an essential role for SHANK-associated RH domain-interacting protein (SHARPIN) in macrophage Toll-like receptor 2 (TLR2) responses

    Zak, D. E., Schmitz, F., Gold, E. S., Diercks, A. H., Peschon, J. J., Valvo, J. S., Niemistö, A., Podolsky, I., Fallen, S. G., Suen, R., Stolyar, T., Johnson, C. D., Kennedy, K. A., Hamilton, M. K., Siggs, O. M., Beutler, B. & Aderem, A., 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 28, p. 11536-11541

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Automatic detection of changes in the dynamics of delayed stochastic gene networks and in vivo production of RNA molecules in Escherichia coli

    Mäkelä, J., Huttunen, H., Kandhavelu, M., Yli-Harja, O. & Ribeiro, A. S., 2011, In : Bioinformatics. 27, 19, p. 2714-2720

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Can Stubborn Sets be Optimal?

    Valmari, A. & Hansen, H., 2011, In : Fundamenta Informaticae. 113, 3-4, p. 377-397

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Genomic and molecular characterization of malignant peripheral nerve sheath tumor identifies the IGF1R pathway as a primary target for treatment

    Yang, J., Ylipää, A., Sun, Y., Zheng, H., Chen, K., Nykter, M., Trent, J., Ratner, N., Lev, D. C. & Zhang, W., 2011, In : Clinical Cancer Research. 17, 24, p. 7563-7573

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Evaluating the Quality of Social Media in an Educational Context

    Silius, K., Kailanto, M. & Tervakari, A-M., 2011, In : International Journal of Emerging Technologies in Learning. 6, 3, p. 21-27

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    User experience evaluation - Which method to choose?

    Roto, V., Vermeeren, A., Väänänen-Vainio-Mattila, K. & Law, E., 2011, In : Lecture Notes in Computer Science. 6949, p. 714-715

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Diversity of temporal correlations between genes in models of noisy and noiseless gene networks

    Ribeiro, A. S., Lloyd-Price, J., Chowdhury, S. & Yli-Harja, O., 2011, In : Biosystems. 104, 2-3, p. 136-144

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Analysis of a multi-wavelength multi-camera phase-shifting profilometric system for real-time operation

    Stoykova, E., Gotchev, A. & Sainov, V., 2011, In : Optics Communications. 284, 1, p. 88-97

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    An Algorithm for the Stochastic Simulation of Gene Expression and Heterogeneous Population Dynamics

    Charlebois, D. A., Intosalmi, J., Fraser, D. & Kaern, M., 2011, In : Communications in Computational Physics. 9, 1, p. 89-112 24 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    The miR-15a-miR-16-1 locus is homozygously deleted in a subset of prostate cancers

    Porkka, K. P., Oggm, E-L., Saramäki, O. R., Vessella, R. L., Pukkila, H., Lähdesmäki, H., van Weerden, W. M., Wolf, M., Kallioniemi, O. P., Jenster, G. & Visakorpi, T., 2011, In : Genes Chromosomes and Cancer. 50, 7, p. 499-509

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    The Extended-OPQ Method for User-Centered Quality of Experience Evaluation: A Study for Mobile 3D Video Broadcasting over DVB-H

    Strohmeier, D., Jumisko-Pyykkö, S., Kunze, K. & Bici, M. O., 2011, In : Eurasip Journal on Image and Video Processing. 2011, p. 1-24 24 p., 538294.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Optimal Inversion of the Anscombe Transformation in Low-Count Poisson Image Denoising

    Mäkitalo, M. & Foi, A., 2011, In : IEEE Transactions on Image Processing. 20, 1, p. 99-109 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    3DTV Broadcasting and Distribution Systems

    Hur, N., Lee, H., Lee, G. S., Lee, S. J., Gotchev, A. & Park, S-I., 2011, In : IEEE Transactions on Broadcasting. 57, 2, p. 395-407

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    A profile-based approach for maintaining software architecture: an industrial experience report

    Riva, C., Selonen, P., Systä, T. & Xu, J., 2011, In : Journal of Software Maintenance and Evolution: Research and Practice. 23, 1, p. 3-20

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Perceptions of Trust Between Online Auction Consumers

    Malinen, S. & Ojala, J., 2011, In : International Journal of Web Portals. 3, 4, p. 15-26

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Optimal estimation

    Rissanen, J., 2011, In : Lecture Notes in Computer Science. 6925, p. 37-37

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Performance on the AX-PET Demonstrator

    Beltrame, P., Bolle, E., Braem, A., Casella, C., Chesi, E., Clinthorne, N., De Leo, R., Dissetori, G., Djambazov, L., Fanti, V., Joram, C., Kagan, H., Lustermann, W., Meddi, F., Nappi, E., Nessi-Tedaldi, F., Oliver, J. F., Pauss, T., Rafecas, M., Renker, D., Rudge, A., Ruotsalainen, U., Schinzel, D., Schneider, T., Seguinot, J., Solevi, P., Stapnes, S., Tuna, U. & Weilhammer, P., 2011, In : Nuclear Physics B. 215, 1, p. 34-36

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Robust DFT-based signal processing for vegetation clutter suppression in ground surveillance doppler radars

    Roenko, A. A., Lukin, V. V., Totsky, A. V., Djurovic, I. & Astola, J. T., 2011, In : Telecommunications and Radio Engineering. 70, 18, p. 1659-1672

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Dependency between learning and profitability in different industry conditions: a system dynamic simulation

    Kortelainen, S., Piirainen, K., Kärkkäinen, H. & Tuominen, M., 2011, In : International Journal of Business Innovation and Research. 5, 2, p. 229-253

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    UX Curve: A Method for Evaluating Long-Term User Experience

    Kujala, S., Roto, V., Väänänen-Vainio-Mattila, K., Karapanos, E. & Sinnelä, A., 2011, In : Interacting with Computers. 23, 5, p. 473-483

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Target training with soft computing tools

    Kantola, J., Piirto, A., Toivonen, J., Chang, Y. & Vanharanta, H., 2011, In : Journal of Computational Science. 2, 3, p. 207-205

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Classification and Retrieval on Macroinvertebrate Image Databases

    Kiranyaz, S., Ince, T., Pulkkinen, J., Gabbouj, M., Ärje, J., Kärkkäinen, S., Tirronen, V., Juhola, M., Turpeinen, T. & Meissner, K., 2011, In : Computers in Biology and Medicine. 41, 7, p. 463-472

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    A Hybrid Method for Quality Evaluation in the Context of Use for Mobile (3D) Television

    Jumisko-Pyykkö, S. & Utriainen, T., 2011, In : Multimedia Tools and Applications. 55, 2, p. 185-225

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Information Diversity in Structure and Dynamics of Simulated Neuronal Networks

    Mäki-Marttunen, T., Acimovic, J., Nykter, M., Kesseli, J., Ruohonen, K., Yli-Harja, O. & Linne, M-L., 2011, In : Frontiers in Computational Neuroscience. 5, p. 1-17 17 p., 26.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    PROlocalizer: integrated web service for protein subcellular localization prediction

    Laurila, K. & Vihinen, M., 2011, In : Amino Acids. 40, 3, p. 975-980

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Inference of Kinetic Parameters of Delayed Stochastic Models of Gene Expression Using a Markov Chain Approximation

    Mannerström, H., Yli-Harja, O. & Ribeiro, A. S., 2011, In : Eurasip Journal on Bioinformatics and Systems Biology. 2011, p. 1-5 5 p., 572876.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    To Fork or Not to Fork: Fork Motivations in SourceForge Projects

    Nyman, L. & Mikkonen, T., 2011, In : International Journal of Open Source Software and Processes. 3, 3, p. 1-9 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    A Study of Bilinear Models in Voice Conversion

    Popa, V., Nurminen, J. & Gabbouj, M., 2011, In : Journal of Signal and Information Processing. 2, 2, p. 125-139

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Face Prediction from fMRI Data during Movie Stimulus: Strategies for Feature Selection

    Kauppi, J-P., Huttunen, H., Korkala, H., Jääskeläinen, I. P., Sams, M. & Tohka, J., 2011, In : Lecture Notes in Computer Science. 6792, p. 189-196

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Video Coding Using Spatially Varying Transform

    Zhang, C., Kemal, U., Lainema, J., Hallapuro, A. & Gabbouj, M., 2011, In : IEEE Transactions on Circuits and Systems for Video Technology. 21, 2, p. 127-140

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis

    Thorsen, K., Schepeler, T., Öster, B., Rasmussen, M. H., Vang, S., Wang, K., Hansen, K. Q., Lamy, P., Pedersen, J. S., Eller, A., Mansilla, F., Laurila, K., Wiuf, C., Laurberg, S., Dyrskjöt, L., Örntoft, T. F. & Andersen, C. L., 2011, In : BMC Genomics. 12, 505.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Exemplar-Based Sparse Representations for Noise Robust Automatic Speech Recognition

    Gemmeke, J. F., Virtanen, T. & Hurmalainen, A., 2011, In : IEEE Transactions on Audio Speech and Language Processing. 19, 7, p. 2067-2080

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Towards More Authentic Learning in Hypermedia

    Tervakari, A-M. & Silius, K., 2011, In : International Journal of Emerging Technologies in Learning. 6, S2, p. 50-56

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Adaptive JPEG lossy compression of color images

    Ponomarenko, N. N., Lukin, V. V., Egiazarian, K. O. & Lepistö, L., 2011, In : Telecommunications and Radio Engineering. 70, 15, p. 1343-1352

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Reports of the Web's Death Are Greatly Exaggerated

    Mikkonen, T. & Taivalsaari, A., 2011, In : Computer. 44, 5, p. 30-36

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    A Closed-Form Approzimation of the Exact Unbiased Inverse of the Anscombe Variance-Stabilizing Transformation

    Mäkitalo, M. & Foi, A., 2011, In : IEEE Transactions on Image Processing. 20, 9, p. 2697-2698

    Research output: Contribution to journalArticleScientificpeer-review

  42. Linearization of Logical Functions Defined by a Set of Orthogonal Terms II. Algorithmic Aspects

    Keren, O., Levin, I. & Stankovic, R. S., 2011, In : Automation and Remote Control. 72, 4, p. 818-827

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    A generic content-based image retrieval framework for mobile devices

    Ahmad, II. & Gabbouj, M., 2011, In : Multimedia Tools and Applications. 55, 3, p. 423-442

    Research output: Contribution to journalArticleScientificpeer-review

  44. Determining the Number of Paths in Decision Diagrams by Using Autocorrelation Coefficients

    Keren, O., Levin, I. & Stankovic, R. S., 2011, In : IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems. 30, 01, p. 31-44

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Androgen Regulation of micro-RNAs in Prostate Cancer

    Waltering, K., Porkka, K., Jalava, S., Urbanucci, A., Kohonen, P., Latonen, L., Kallioniemi, O., Jenster, G. & Visakorpi, T., 2011, In : Prostate. 71, 6, p. 604-614

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Comparison and optimization of transient transfection methods at human astrocytoma cell line 1321N1

    Marucci, G., Lammi, C., Buccioni, M., Dal Ben, D., Lambertucci, C., Amantini, C., Santoni, G., Kandhavelu, M., Abbracchio, M. P., Lecca, D., Volpini, R. & Cristalli, G., 2011, In : ANALYTICAL BIOCHEMISTRY. 414, 2, p. 300-302

    Research output: Contribution to journalArticleScientificpeer-review

  47. Linearization of logical functions defined by a set of orthogonal terms. I. Theoretical aspects

    Keren, O., Levin, I. & Stankovic, R. S., 2011, In : Automation and Remote Control. 72, 3, p. 615-625

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Genome wide study of NF-Y type CCAAT boxes in unidirectional and bidirectional promoters in human and mouse

    Häkkinen, A., Healy, S., Jacobs, H. T. & Ribeiro, A. S., 2011, In : Journal of Theoretical Biology. 281, 1, p. 74-83

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Overexpression of androgen receptor enhances the binding of the receptor to the chromatin in prostate cancer

    Urbanucci, A., Sahu, B., Seppälä, J., Larjo, A., Latonen, L., Waltering, K., Tammela, T., Vessella, R., Lähdesmäki, H., Jänne, O. & Visakorpi, T., 2011, In : Oncogene. 31, p. 2153-2163

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Fermentative hydrogen production by Clostridium butyricum and Escherichia coli in pure and cocultures

    Seppälä, J. J., Puhakka, J. A., Yli-Harja, O., Karp, M. T. & Santala, V., 2011, In : International Journal of Hydrogen Energy. 36, 17, p. 10701-10708

    Research output: Contribution to journalArticleScientificpeer-review

  51. An Improved Algorithm for the Construction of Decision Diagrams by Rearranging and Partitioning the Input Cube Set

    Stojkovic, S., Jankovic, D. & Stankovic, R. S., 2011, In : IEEE Transactions on Computers. 59, 8, p. 1105-1119

    Research output: Contribution to journalArticleScientificpeer-review

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