Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. A1 Journal article-refereed
  2. Published

    Azopolymer-based micro- and nanopatterning for photonic applications

    Priimagi, A. & Shevchenko, A., 1 Feb 2014, In : Journal of Polymer Science. Part B, Polymer Physics. 52, 3, p. 163-182 20 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Both zundel and eigen isomers contribute to the IR spectrum of the gas-phase H9O4 + cluster

    Kulig, W. & Agmon, N., 9 Jan 2014, In : Journal of Physical Chemistry Part B. 118, 1, p. 278-286 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Natural thermal adaptation increases heat shock protein levels and decreases oxidative stress

    Oksala, N. K. J., Ekmekçi, F. G., Özsoy, E., Kirankaya, Ş., Kokkola, T., Emecen, G., Lappalainen, J., Kaarniranta, K. & Atalay, M., 1 Jan 2014, In : REDOX BIOLOGY. 3, p. 25-28 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    A microscopic view of the mechanisms of active transport across the cellular membrane

    Enkavi, G., Li, J., Wen, P., Thangapandian, S., Moradi, M., Jiang, T., Han, W. & Tajkhorshid, E., 2014, In : Annual Reports in Computational Chemistry. 10, p. 77-125 49 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Direct observation of the collapse of the delocalized excess electron in water

    Savolainen, J., Uhlig, F., Ahmed, S., Hamm, P. & Jungwirth, P., 2014, In : Nature Chemistry. 6, 8, p. 697-701 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    A full-potential linearized augmented plane wave study of the interaction of CO2 with α-Pu (020) surface nanolayers

    Wang, J. & Ray, A. K., 2014, In : Journal of Computational and Theoretical Nanoscience. 11, 7, p. 1710-1717 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Molekuly a ionty v pohybu: Počítačové simulace biochemických a biofyzikálních procesů

    Jungwirth, P., 2014, In : Chemicke Listy. 108, 4, p. 278-284 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Magnetic origin of the chemical balance in alloyed Fe-Cr stainless steels: First-principles and Ising model study

    Airiskallio, E., Nurmi, E., Väyrynen, I. J., Kokko, K., Ropo, M., Punkkinen, M. P. J., Johansson, B. & Vitos, L., 2014, In : Computational Materials Science. 92, p. 135-140 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Effect of non-rubber components of NR on the carbon nanotube (CNT) localization in SBR/NR blends

    Le, H. H., Parsekar, M., Ilisch, S., Henning, S., Das, A., Stöckelhuber, K. W., Beiner, M., Ho, C. A., Adhikari, R., Wießner, S., Heinrich, G. & Radusch, H. J., 2014, In : Macromolecular Materials and Engineering. 299, 5, p. 569-582 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Novel derivatives of bacteriochlorophyll a: Complex formation with albumin and the mechanism of tumor cell photodamage

    Akimova, A. V., Grin, M. A., Golovina, G. V., Kokrashvili, T. A., Vinogradov, A. M., Mironov, A. F., Rychkov, G. N., Shtil, A. A., Kuzmin, V. A. & Durandin, N. A., 2014, In : DOKLADY BIOCHEMISTRY AND BIOPHYSICS. 454, 1, p. 17-20 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Fabrication of 3-D nanodimensioned electric double layer capacitor structures using block copolymer templates

    Rasappa, S., Borah, D., Senthamaraikannan, R., Faulkner, C. C., Holmes, J. D. & Morris, M. A., 2014, In : Journal Nanoscience and Nanotechnology. 14, 7, p. 5221-5227 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Study of the kinetics and mechanism of rapid self-assembly in block copolymer thin films during solvo-microwave annealing

    Mokarian-Tabari, P., Cummins, C., Rasappa, S., Simao, C., Torres, C. M. S., Holmes, J. D. & Morris, M. A., 2014, In : Langmuir. 30, 35, p. 10728-10739 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Kinetics of bioconjugate nanoparticle label binding in a sandwich-type immunoassay

    Näreoja, T., Ebner, A., Gruber, H. J., Taskinen, B., Kienberger, F., Hänninen, P. E., Hytönen, V. P., Hinterdorfer, P. & Härmä, H., 2014, In : Analytical and Bioanalytical Chemistry. 406, 2, p. 493-503 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Self-assembly of polystyrene-block-poly(4-vinylpyridine) block copolymer on molecularly functionalized silicon substrates: Fabrication of inorganic nanostructured etchmask for lithographic use

    Cummins, C., Borah, D., Rasappa, S., Chaudhari, A., Ghoshal, T., O'Driscoll, B. M. D., Carolan, P., Petkov, N., Holmes, J. D. & Morris, M. A., 21 Dec 2013, In : Journal of Materials Chemistry C. 1, 47, p. 7941-7951 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Analysis of free, mono- and diacetylated polyamines from human urine by LC-MS/MS

    Häkkinen, M. R., Roine, A., Auriola, S., Tuokko, A., Veskimäe, E., Keinänen, T. A., Lehtimäki, T., Oksala, N. & Vepsäläinen, J., 15 Dec 2013, In : JOURNAL OF CHROMATOGRAPHY B: ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 941, p. 81-89 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Location of dispersing agent in rubber nanocomposites during mixing process

    Le, H. H., Oßwald, K., Wießner, S., Das, A., Stöckelhuber, K. W., Boldt, R., Gupta, G., Heinrich, G. & Radusch, H. J., 13 Dec 2013, In : Polymer. 54, 26, p. 7009-7021 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Proliferation and differentiation of adipose stem cells towards smooth muscle cells on poly(trimethylene carbonate) membranes

    German, S. J., Behbahani, M., Miettinen, S., Grijpma, D. W. & Haimi, S. P., Dec 2013, In : Macromolecular symposia. 334, 1, p. 133-142 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Effect of surface morphology of poly(ïμ-caprolactone) scaffolds on adipose stem cell adhesion and proliferation

    Diban, N., Haimi, S. P., Bolhuis-Versteeg, L., Teixeira, S., Miettinen, S., Poot, A. A., Grijpma, D. W. & Stamatialis, D., Dec 2013, In : Macromolecular symposia. 334, 1, p. 126-132 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Human adipose stem cells in chondrogenic differentiation medium without growth factors differentiate towards annulus fibrosus phenotype in vitro

    Gebraad, A. W. H., Miettinen, S., Grijpma, D. W. & Haimi, S. P., Dec 2013, In : Macromolecular symposia. 334, 1, p. 49-56 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Fabrication of ssDNA/Oligo(ethylene glycol) monolayers and patterns by exchange reaction promoted by ultraviolet light irradiation

    Khan, M. N. & Zharnikov, M., 27 Nov 2013, In : Journal of Physical Chemistry C. 117, 47, p. 24883-24893 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Release of halide ions from the buried active site of the haloalkane dehalogenase LinB revealed by stopped-flow fluorescence analysis and free energy calculations

    Hladilkova, J., Prokop, Z., Chaloupkova, R., Damborsky, J. & Jungwirth, P., 21 Nov 2013, In : Journal of Physical Chemistry Part B. 117, 46, p. 14329-14335 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Ion pairing in aqueous lithium salt solutions with monovalent and divalent counter-anions

    Pluhařová, E., Mason, P. E. & Jungwirth, P., 21 Nov 2013, In : Journal of Physical Chemistry A. 117, 46, p. 11766-11773 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    The Halogen Bond in the Design of Functional Supramolecular Materials: Recent Advances

    Priimagi, A., Cavallo, G., Metrangolo, P. & Resnati, G., 19 Nov 2013, In : Accounts of Chemical Research. 46, 11, p. 2686-2695 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    How conformational flexibility stabilizes the hyperthermophilic elongation factor G-domain

    Kalimeri, M., Rahaman, O., Melchionna, S. & Sterpone, F., 7 Nov 2013, In : Journal of Physical Chemistry Part B. 117, 44, p. 13775-13785 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Embedded cluster models for reactivity of the hydrated electron

    Uhlig, F. & Jungwirth, P., Nov 2013, In : ZEITSCHRIFT FUR PHYSIKALISCHE CHEMIE-INTERNATIONAL JOURNAL OF RESEARCH IN PHYSICAL CHEMISTRY AND CHEMICAL PHYSICS. 227, 11, p. 1583-1593 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Soft-graphoepitaxy using nanoimprinted polyhedral oligomeric silsesquioxane substrates for the directed self-Assembly of PS-b-PDMS

    Borah, D., Simao, C. D., Senthamaraikannan, R., Rasappa, S., Francone, A., Lorret, O., Salaun, M., Kosmala, B., Kehagias, N., Zelsmann, M., Sotomayor-Torres, C. M. & Morris, M. A., Nov 2013, In : European Polymer Jounal. 49, 11, p. 3512-3521 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Porphyrin adsorbed on the (1010) surface of the wurtzite structure of ZnO-conformation induced effects on the electron transfer characteristics

    Niskanen, M., Kuisma, M., Cramariuc, O., Golovanov, V., Hukka, T. I., Tkachenko, N. & Rantala, T. T., 28 Oct 2013, In : Physical Chemistry Chemical Physics. 15, 40, p. 17408-17418 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Reversible biofunctionalization of surfaces with a switchable mutant of avidin

    Pollheimer, P., Taskinen, B., Scherfler, A., Gusenkov, S., Creus, M., Wiesauer, P., Zauner, D., Schöfberger, W., Schwarzinger, C., Ebner, A., Tampé, R., Stutz, H., Hytönen, V. P. & Gruber, H. J., 16 Oct 2013, In : Bioconjugate Chemistry. 24, 10, p. 1656-1668 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Importance of the ion-pair interactions in the OPEP coarse-grained force field: Parametrization and validation

    Sterpone, F., Nguyen, P. H., Kalimeri, M. & Derreumaux, P., 8 Oct 2013, In : Journal of Chemical Theory and Computation. 9, 10, p. 4574-4584 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Zinc coordination spheres in protein structures

    Laitaoja, M., Valjakka, J. & Jänis, J., 7 Oct 2013, In : Inorganic Chemistry. 52, 19, p. 10983-10991 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Spectroscopic study of a DNA brush synthesized in situ by surface initiated enzymatic polymerization

    Khan, M. N., Tjong, V., Chilkoti, A. & Zharnikov, M., 29 Aug 2013, In : Journal of Physical Chemistry Part B. 117, 34, p. 9929-9938 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Mechanisms of acceleration and retardation of water dynamics by ions

    Stirnemann, G., Wernersson, E., Jungwirth, P. & Laage, D., 14 Aug 2013, In : Journal of the American Chemical Society. 135, 32, p. 11824-11831 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Irradiation promoted exchange reaction with disulfide substituents

    Khan, M. N. & Zharnikov, M., 18 Jul 2013, In : Journal of Physical Chemistry C. 117, 28, p. 14534-14543 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Tuning PDMS brush chemistry by UV-O3 exposure for PS-b-PDMS microphase separation and directed self-assembly

    Borah, D., Rasappa, S., Senthamaraikannan, R., Holmes, J. D. & Morris, M. A., 16 Jul 2013, In : Langmuir. 29, 28, p. 8959-8968 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Reversal of the hofmeister series: Specific ion effects on peptides

    Paterová, J., Rembert, K. B., Heyda, J., Kurra, Y., Okur, H. I., Liu, W. R., Hilty, C., Cremer, P. S. & Jungwirth, P., 11 Jul 2013, In : Journal of Physical Chemistry Part B. 117, 27, p. 8150-8158 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Photoswitchable hydrogel surface topographies by polymerisation-induced diffusion

    Stumpel, J. E., Liu, D., Broer, D. J. & Schenning, A. P. H. J., 2 Jul 2013, In : Chemistry: A European Journal. 19, 33, p. 10922-10927 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Development and characterization of poly(ε-caprolactone) hollow fiber membranes for vascular tissue engineering

    Diban, N., Haimi, S., Bolhuis-Versteeg, L., Teixeira, S., Miettinen, S., Poot, A., Grijpma, D. & Stamatialis, D., 1 Jul 2013, In : Journal of Membrane Science. 438, p. 29-37 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Shape-dependent plasmonic response and directed self-assembly in a new semiconductor building block, indium-doped cadmium oxide (ICO)

    Gordon, T. R., Paik, T., Klein, D. R., Naik, G. V., Caglayan, H., Boltasseva, A. & Murray, C. B., 12 Jun 2013, In : Nano Letters. 13, 6, p. 2857-2863 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Cell toxicity and oxidative potential of engine exhaust particles: Impact of using particulate filter or biodiesel fuel blend

    Gerlofs-Nijland, M. E., Totlandsdal, A. I., Tzamkiozis, T., Leseman, D. L. A. C., Samaras, Z., Låg, M., Schwarze, P., Ntziachristos, L. & Cassee, F. R., 4 Jun 2013, In : Environmental Science and Technology. 47, 11, p. 5931-5938 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Cation-specific effects on enzymatic catalysis driven by interactions at the tunnel mouth

    Štěpánková, V., Paterová, J., Damborský, J., Jungwirth, P., Chaloupková, R. & Heyda, J., 30 May 2013, In : Journal of Physical Chemistry Part B. 117, 21, p. 6394-6402 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Surface properties and interaction forces of biopolymer-doped conductive polypyrrole surfaces by atomic force microscopy

    Pelto, J. M., Haimi, S. P., Siljander, A. S., Miettinen, S. S., Tappura, K. M., Higgins, M. J. & Wallace, G. G., 21 May 2013, In : Langmuir. 29, 20, p. 6099-6108 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Depth profiling of PLGA copolymer in a novel biomedical bilayer using confocal raman spectroscopy

    McManamon, C., Delaney, P., Kavanagh, C., Wang, J. J., Rasappa, S. & Morris, M. A., 14 May 2013, In : Langmuir. 29, 19, p. 5905-5910 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Screening pretreatment methods to enhance thermophilic anaerobic digestion of pulp and paper mill wastewater treatment secondary sludge

    Bayr, S., Kaparaju, P. & Rintala, J., 1 May 2013, In : Chemical Engineering Journal. 223, p. 479-486 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Immobilized bioactive agents onto polyurethane surface with heparin and phosphorylcholine group

    Tan, M., Feng, Y., Wang, H., Zhang, L., Khan, M., Guo, J., Chen, Q. & Liu, J., May 2013, In : Macromolecular Research. 21, 5, p. 541-549 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Nanoindentation study of light-induced softening of supramolecular and covalently functionalized azo polymers

    Vapaavuori, J., Mahimwalla, Z., Chromik, R. R., Kaivola, M., Priimagi, A. & Barrett, C. J., 28 Apr 2013, In : Journal of Materials Chemistry C. 1, 16, p. 2806-2810 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Understanding the reinforcing behavior of expanded clay particles in natural rubber compounds

    Rooj, S., Das, A., Stöckelhuber, K. W., Wang, D. Y., Galiatsatos, V. & Heinrich, G., 14 Apr 2013, In : Soft Matter. 9, 14, p. 3798-3808 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Biomimetic zinc chlorin-poly(4-vinylpyridine) assemblies: Doping level dependent emission-absorption regimes

    Pale, V., Nikkonen, T., Vapaavuori, J., Kostiainen, M., Kavakka, J., Selin, J., Tittonen, I. & Helaja, J., 21 Mar 2013, In : Journal of Materials Chemistry C. 1, 11, p. 2166-2173 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Site-specific analysis of dipole polarizabilities of heterogeneous systems: Iron-doped Sin (n = 1-14) clusters

    Ma, L., Wang, J. & Wang, G., 7 Mar 2013, In : Journal of Chemical Physics. 138, 9, 094304.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Molecularly functionalized silicon substrates for orientation control of the microphase separation of PS-b-PMMA and PS-b-PDMS block copolymer systems

    Borah, D., Ozmen, M., Rasappa, S., Shaw, M. T., Holmes, J. D. & Morris, M. A., 5 Mar 2013, In : Langmuir. 29, 9, p. 2809-2820 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    Optical vortex generation in nematic liquid crystal light valves

    Barboza, R., Bortolozzo, U., Assanto, G. & Residori, S., 1 Mar 2013, In : Molecular Crystals and Liquid Crystals. 572, 1, p. 24-30 7 p.

    Research output: Contribution to journalArticleScientificpeer-review