Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2008
  2. Published

    Erimenu.fi: Web service for supporting people who have a special diet

    Huhtamäki, J., Häkkinen, P., Immonen, T., Kaikuvuo, I., Mäki, A., Mäkinen, R., Silius, K., Tebest, T. & Tervakari, A-M., 2008

    Research output: Artistic and non-textual formSoftwareScientific

  3. Evaluation of a commercialized in situ hybridization assay for detecting human paillomavirus DNA in tissue specimens from patients with cervical intraepithelial neoplasia and cervical carcinoma

    Guo, M., Gong, Y., Deavers, M., Silva, E., Jan, Y. J., Zhang, W., Cogdell, D., Lin, E., Luthra, R. & Sneige, N., 2008, In : Journal of Clinical Microbiology. 46, 1, p. 274-280

    Research output: Contribution to journalArticleScientificpeer-review

  4. Evolution from heterozygous to homozygous KIT mutation in gastrointestinal stromal tumor correlates eith the mechanism of mitotic nondisjunction and significant tumor progression

    Chen, L. L., Holden, J. A., Choi, H., Zhu, J., Wu, E. F., Jones, K. A., Ward, J. H., Andtbacka, R., Randall, R. L., Scife, C. L., Hunt, K. K., Prieto, V. G., Raymond, A. K., Zhang, W., Trent, J. C., Benjamin, R. S. & Frazier, M. L., 2008, In : Modern Pathology. 21, 7, p. 826-836

    Research output: Contribution to journalArticleScientificpeer-review

  5. Gene expression profiling of diffuse large B-cell lymphoma supervised by CD21 expression

    Miyazaki, K., Yamaguchi, M., Suguro, M., Ogawa, S., Ueno, S., Ji, Y., Choi, W., Zhang, W., Katayama, N., Shiku, H. & Kobayashi, T., 2008, In : British Journal of Haematology. 142, 4, p. 562-570

    Research output: Contribution to journalArticleScientificpeer-review

  6. Identification of ETS-like transcription factor 4 as a novel androgen receptor target in prostate cancer cells

    Makkonen, H., Jääskeläinen, T., Pitkänen-Arsiola, T., Rytinki, M., Waltering, K. K., Mättö, M., Visakorpi, T. & Palvimo, J. J., 2008, In : Oncogene. 27, 36, p. 4865-4876

    Research output: Contribution to journalArticleScientificpeer-review

  7. IGFBP2 and IGFBP5 overexpression correaltes with the lymph node metastasis in T1 breasdt carcinomas

    Wang, H., Arun, B. K., Fuller, G. N., Zhang, W., Middleton, L. P. & Sahin, A. A., 2008, In : Breast Journal. 14, 3, p. 261-267

    Research output: Contribution to journalArticleScientificpeer-review

  8. Importance of side information generation for distributed video coding

    Isik, C. V., Bici, M. O., Aksay, A. & Akar, G. B., 2008, Proceedings of the IEEE 16th Signal Processing, Communication and Applications Conference, SIU 2008, Didim, Turkey, 20-22 April 2008. p. 4 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  9. Published

    Konfokaalimikroskopia

    Mäkiraatikka, E., 2008, In : Solu, biotekniikan koulutusohjelman äänenkannattaja. 2, p. 4-7

    Research output: Contribution to journalArticleProfessional

  10. Published

    Matematiikan perustaitotesti - STACK based Mathematics Basic Skills Test

    Miilumäki, T., Mäkelä, T., Pohjolainen, S., Turunen, E. & Vattulainen, K., 2008

    Research output: Artistic and non-textual formSoftwareScientific

  11. Methods for identifying and studying genetic alterations in hormone-dependent cancers

    Saramäki, O. R., Waltering, K. K. & Visakorpi, T., 2008, The Nuclear Receptor Superfamily: Methods and Protocols. McEwan, I. J. (ed.). p. 263-277

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  12. Published

    Multi-dimensional particle swarm optimization for dynamic environments

    Kiranyaz, S., Pulkkinen, J. & Gabbouj, M., 2008, Proceedings of International Conference on Innovations in Information Technology, IIT 2008, Al Ain, United Arab Emirates, 16-18 December 2008. p. 34-38

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  13. Mutual information in random Boolean models of regulatory networks

    S. Ribeiro, A., Kauffman, S. A., Lloyd-Price, J., Samuelsson, B. & Socolar, J. E. S., 2008, In : Physical Review E. 77, 1, 011901, p. 10 p

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Optimize observational time points to maximize the inferability of gene networks

    Emmert-Streib, F. & Ribeiro, A., 2008, Proceedings of International Conference on Bioinformatics & Computational Biology, BIOCOMP 2008, Las Vegas, USA, 14-17 July 2008. Arabnia, H. R. (ed.). p. 55-60

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  15. Published

    Pattern-based genetic model refinements in MDA

    Räihä, O., Koskimies, K., Mäkinen, E. & Systä, T., 2008, In : Nordic Journal of Computing. 14, 4, p. 338-355

    Research output: Contribution to journalArticleScientificpeer-review

  16. Phosphorylation of Thr18 and Ser20 in Ad-p53-induced apoptosis

    nakamizo, A., Amano, T., Zhang, W., Zhang, X. Q., Dunmire, V., Ramdas, L., Liu, T. J., Shono, T., Sasaki, T., Benedict, W. F., Sawaya, R. & Lang, F. F., 2008, In : Neuro-Oncology. 10, 3, p. 275-291

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Quantifying local structure effects in network dynamics

    S. Ribeiro, A., Lloyd-Price, J., Kesseli, J., Häkkinen, A. & Yli-Harja, O., 2008, In : Physical Review E. 78, 5, 056108, p. 10 p

    Research output: Contribution to journalArticleScientificpeer-review

  18. Recent progress in the genomics of soft tissue sarcomas

    Conley, A. P., Trent, J. & Zhang, W., 2008, In : Current Opinion in Oncology. 20, p. 395-399

    Research output: Contribution to journalReview ArticleScientificpeer-review

  19. Somatic genetic changes in prostate cancer

    Helenius, M. A., Waltering, K. K. & Visakorpi, T., 2008, prostate Cancer: Signaling Networks, Genetics, and New Treatment Strategies. Pestell, R. G. (ed.). p. 99-128

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  20. Somatic mutation analysis of MYHI I in breast and prostate cancer

    Alhopuro, P., Karhu, A., Winqvist, R., Waltering, K., Visakorpi, T. & Aaltonen, L. A., 2008, In : BMC Cancer. 8, 263, p. 5 p

    Research output: Contribution to journalArticleScientificpeer-review

  21. The hOGGI Ser326Cys polymorphism and lung cancer risk: a meta-analysis

    Li, H. X., Hao, X. S., Zhang, W., Wei, Q. & Chen, K., 2008, In : Cancer Epidemiology Biomarkers and Prevention. 17, 7, p. 1739-1745

    Research output: Contribution to journalArticleScientificpeer-review

  22. Time-frequency analysis of the non-stationary multifrequency signal by using parametrical short-time ispectral density estimation

    Molchanov, P. & Totsky, A., 2008, Proceedings of the International Conference TCSET 2008, Modern Problems of Radio Engineering, Telecommunications and Computer Science, Lviv-Slavsko, Ukraine, 19-23 February 2008. p. 276-279

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  23. Towards interruptionless experiments on MEAs

    Mikkonen, J. E., Kandler, S., Okujeni, S., Weihberger, O. & Egert, U., 2008, Proceedings of the 6th International Meeting on Substrate-Integrated Micro Electrode Arrays, MEA Meeting 2008, 8-11 July 2008, Reutlingen, Germany. p. 331-332

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  24. Published

    Transformational pattern system - some assembly required

    Siikarla, M. & Systä, T., 2008, In : Electronical Notes in Theoretical Computing. 211, p. 63-74

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    TTY-Piiri - Social web service for TUT students

    Huhtamäki, J., Miilumäki, T., Meriläinen, J., Pohjolainen, S., Silius, K. & Tebest, T., 2008

    Research output: Artistic and non-textual formSoftwareScientific

  26. Published

    Vaikuttamistaidot: Online version of a material package on skills of e-democracy (Vaikuttamistaidot)

    Huhtamäki, J., Meriläinen, J., Silius, K. & Tebest, T., 2008

    Research output: Artistic and non-textual formSoftwareScientific

  27. WWOX tumor suppressor gene

    Yang, J. & Zhang, W., 2008, In : Histology and Histopathology. 23, 7, p. 877-882

    Research output: Contribution to journalArticleScientificpeer-review

  28. 2007
  29. Activation of polyamine catabolism by N1, N11-diethylnorspermine leads to cell death in glioblastoma

    Jiang, R., Choi, W., Khan, A., Hess, K., Gerner, W. W., Casero, R., Yung, W. K., Hamilton, S. R. & Zhang, W., 2007, In : International Journal of Oncology. 31, 2, p. 431-440

    Research output: Contribution to journalArticleScientificpeer-review

  30. Activation of polyamine catabolism by N1, N11-dietylnorspermine alters the cellular localization of mTOR and downregulates mTOR protein level in glioblastoma cells

    Jiang, R., Choi, W., Hu, L., Gerner, W. W., Hamilton, S. R. & Zhang, W., 2007, In : Cancer Biology and Therapy. 6, 10, p. 1644-1648

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Applying template meta-programming techniques for a domain-specific visual language - an industrial experience report

    Karaila, M. & Systä, T., 2007, 29th International Conference on Software Engineering (ICSE '07), Minneapolis, MN, USA, 20-26 May 2007. p. 571-580

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  32. Published

    Applying triple graph grammars for pattern-based workflow model transformations

    Lohmann, C., Greenyer, J., Jiang, J. & Systä, T., 2007, In : Journal of Object Technology, Special Issue: TOOLS EUROPE 2007. 6, 9, p. 253-273

    Research output: Contribution to journalArticleScientificpeer-review

  33. Assessment of automated scintigram alignment in the stackgram domain for cardiac stress-rest SPECT studies

    Happonen, A. P. & Koskinen, M. O., 2007, In : Computerized Medical Imaging and Graphics. 31, 8, p. 595-606

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Avustajaportti - Verkkopalvelu henkilökohtaisen avun välittämiseen

    Häkkinen, P., Kaikuvuo, I., Mäkelä, T., Mäkinen, R., Silius, K. & Tervakari, A-M., 2007

    Research output: Artistic and non-textual formSoftwareScientific

  35. CellLine, a stochastic cell lineage simulator

    S. Ribeiro, A., Charlebois, D. A. & Lloyd-Price, J., 2007, In : Bioinformatics. 23, 24, p. 3409-3411

    Research output: Contribution to journalArticleScientificpeer-review

  36. Comparative analysis of genes regulated in acute myelomonocytic leukemia with and without inv(16)(p13q22) using microarray techniques, real-time PCR, immunohistochemistry, and flow cytometry immunophenotyping

    Sun, X., Zhang, W., Ramdas, L., Stivers, D. N., Jones, D. M., Kantarjian, H. M., Estey, E. H., Vadhan-Raj, S., Medeiros, L. J. & Bueso-Ramos, C. E., 2007, In : Modern Pathology. 20, 8, p. 811-820

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Computational methods for estimation of cell cycle phase distributions of yeast cells

    Niemistö, A., Nykter, M., Aho, T., Jalovaara, H., Marjanen, K., Ahdesmäki, M., Ruusuvuori, P., Tiainen, M., Linne, M-L. & Yli-Harja, O., 2007, In : Eurasip Journal on Bioinformatics and Systems Biology. 2007, 46150, p. 9 p

    Research output: Contribution to journalArticleScientificpeer-review

  38. Differentially expressed genes between primary cancer and paired lymph node metastases predict clinical outcome of node-positive breast cancer patients

    Feng, Y., Sun, B., Li, X., Zhang, L., Niu, Y., Xiao, C., Fang, Z., Ning, L., Wang, Y., Cheng, J., Zhang, W. & Hao, X., 2007, In : Breast Cancer Research and Treatment. 103, 3, p. 319-329

    Research output: Contribution to journalArticleScientificpeer-review

  39. Distribution and viral load of eight oncogenic types of human papillomavirus (HPV) and HPV 16 integration status in cervical intraepithelial neoplasia and carcinoma

    Guo, M., Sneige, N., Silva, E., Jan, Y. J., Cogdell, D., Lin, E., Luthra, R. & Zhang, W., 2007, In : Modern Pathology. 20, p. 256-266

    Research output: Contribution to journalArticleScientificpeer-review

  40. Effects of coupling strength and space on the dynamics of coupled toggle switches in stochastic gene networks with multiple-delayed reactions

    S. Ribeiro, A., 2007, In : Physical Review E. 75, 6, 061903.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Effects of microarray noise on inference efficiency of a stochastic model of gene networks

    Charlebois, D. A., S. Ribeiro, A., Lehmussola, A., Lloyd-Price, J., Yli-Harja, O. & Kauffman, S. A., 2007, In : WSEAS Transactions on Biology and Biomedicine. 4, 2, p. 15-21

    Research output: Contribution to journalArticleScientificpeer-review

  42. Expression level of insulin-like growth factor binding protein 5 mRNA is a prognostic factor for breast cancer

    Li, X., Cao, X., Zhang, W. & Feng, Y., 2007, In : Cancer Science. 98, 10, p. 1592-1596

    Research output: Contribution to journalArticleScientificpeer-review

  43. Expression of receptor tyrosine kinases and apoptotic molecules in rhabdomyosarcoma: correlation with overall survival in 105 patients

    Armistead, P. M., Salganick, J., Roh, J. S., Steinert, D. M., Patel, S., Munsell, M., El-Naggar, A., Benjamin, R. S., Zhang, W. & Trent, J. C., 2007, In : Cancer. 110, 10, p. 2293-2303

    Research output: Contribution to journalArticleScientificpeer-review

  44. Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas

    Price, N., Trent, J., El-Naggar, A., Cogdell, D., Taylor, E. E., Hunt, K., Pollock, R., Hood, L., Shmulevich, I. & Zhang, W., 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, p. 3414-3419

    Research output: Contribution to journalArticleScientificpeer-review

  45. Independent motile microplast formation correlates with glioma cell invasiveness

    Yount, G., Taft, R., Luu, T., Rachlin, K., Moore, D. & Zhang, W., 2007, In : Journal of Neuro-Oncology. 81, 2, p. 113-121

    Research output: Contribution to journalArticleScientificpeer-review

  46. Insulin-like growth factor binding protein 2 promotes glioma development and progression

    Dunlap, S. M., Celestino, J., Wang, H., Jiang, R., Holland, E., Fueller, G. N. & Zhang, W., 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 28, p. 11736-11741

    Research output: Contribution to journalArticleScientificpeer-review

  47. In vitro expression levels of cell cycle checkpoint proteins are associated with cellular DNA repair capacity in peripheral blood lymphocytes: a multivariate analysis

    Fan, Y. H., Hu, Z. B., Li, C., Wang, L. E., Guo, Z., Qiao, Y., Zhang, L., Zhang, W., Mao, L. & Wei, Q. Y., 2007, In : Journal of Proteome Research. 6, 4, p. 1560-1567

    Research output: Contribution to journalArticleScientificpeer-review

  48. Lääketieteen kirjallisuustietokannat ja tiedonhaku

    Heikkinen, J., Isohanni, M. & Miettunen, J., 2007, In : Suomen Lääkärilehti. 62, 22, p. 2156-2170

    Research output: Contribution to journalReview ArticleScientificpeer-review

  49. Learning and distributed systems development

    Pekkola, S., 2007, ECSCW'07 workshop on The Challenges of Collaborative Work in Global Software Development.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  50. MicroRNA expression profiling in prostate cancer

    Porkka, K. P., Pfeiffer, M. J., Waltering, K. K., Vessella, R. I., Tammela, T. L. J. & Visakorpi, T., 2007, In : Cancer Research. 67, 13, p. 6130-6135

    Research output: Contribution to journalArticleScientificpeer-review

  51. Molecular approaches to resolve diagnostic dilemmas: the case of gastrointestinal stromal tumor and leiomyosarcoma

    Trent, J., Lazar, A. J. F. & Zhang, W., 2007, In : Future Oncology. 3, 6, p. 629-637

    Research output: Contribution to journalArticleScientificpeer-review

  52. Mutation analysis of aryl hydrocarbon receptor interacting protein (AIP) gene in colorectal, breast, and prostate cancers

    Georgitsi, M., Karhu, A., Winqvist, R., Visakorpi, T., Waltering, K., Vahteristo, P., Launonen, V. & Aaltonen, L. A., 2007, In : British Journal of Cancer. 96, 2, p. 352-356

    Research output: Contribution to journalArticleScientificpeer-review

  53. Noisy attractors and ergodic sets in models of gene regulatory networks

    S. Ribeiro, A. & Kauffman, S. A., 2007, In : Journal of Theoretical Biology. 247, 4, p. 743-755

    Research output: Contribution to journalArticleScientificpeer-review

  54. Online interaction with in vitro neuronal networks

    Weihberger, O., Mikkonen, J. E. & Egert, U., 2007, Proceedings of the Seventh Göttingen Meeting of the German Neuroscience Society, 29 March - 1 April 2007, Göttingen, Germany. p. 1 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  55. Published

    Open Source Contributions as Platform Specialization Units

    Hammouda, I. & Mikkonen, T., 2007, Proceedings of OSSPL 2007, Limerick, Ireland, June 2007.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  56. Published

    Polkka-blogit - Opetuskäyttöön TTY:lle räätälöity blogijärjestelmä

    Huhtamäki, J., Häkkinen, P., Kaikuvuo, I., Pohjanen, L., Rasi, E., Saarela, L., Silius, K., Tervakari, A-M. & Zetterberg, S., 2007

    Research output: Artistic and non-textual formSoftwareScientific

  57. Polymorphic TP53BP1 and TP53 gene interactions associated with risk of squamous cell carcinoma of the head and neck

    Chen, K. X., Hu, Z., Wang, L. E., Zhang, W., Sturgis, E. M. & Wei, Q., 2007, In : Clinical Cancer Research. 13, 14, p. 4300-4305

    Research output: Contribution to journalArticleScientificpeer-review

  58. SGN Sim, a stochastic genetic networks simulator

    S. Ribeiro, A. & Lloyd-Price, J., 2007, In : Bioinformatics. 23, 6, p. 777-779

    Research output: Contribution to journalArticleScientificpeer-review

  59. Single nucleotide polymorphisms at the TP53-binding or responsive promoter regions of BAX and BCL2 genes and risk of squamous cell carcinoma of the head and neck

    Chen, K., Hu, Z., Wang, L., Sturgis, E. M., El-Naggar, A. K., Zhang, W. & Wei, Q., 2007, In : Carcinogenesis. 28, 9, p. 2008-2012

    Research output: Contribution to journalArticleScientificpeer-review

  60. Published
  61. Studying genetic regulatory networks at the molecular level: Delayed reaction stochastic models

    Zhu, R., S. Ribeiro, A., Salahub, D. & Kauffman, S. A., 2007, In : Journal of Theoretical Biology. 246, 4, p. 725-745

    Research output: Contribution to journalArticleScientificpeer-review

  62. Studying utility of personal usage-history: A software tool for enabling empirical research

    Wideroos, K. & Pekkola, S., 2007, In : Lecture Notes in Computer Science. 4550, p. 976-984

    Research output: Contribution to journalArticleScientificpeer-review

  63. Published

    Time-interleaved simulcast and redundant intra picture insertion for reducing tune-in delay in DVB-H

    Malamal Vadakital, V. K., Hannuksela, M. M. & Gabbouj, M., 2007, Proceedings of the 16th International Packet Video Workshop, Packet Video 2007, Lausanne, Swizerland, 12-13 November 2007. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  64. Towards industrial service business: Challenges in Designing ICT support for the networks of companies

    Hiippavuori, S., Hänninen, M., Pekkola, S. & Luostarinen, K., 2007, Proceedings of the 9th International Conference on Enterprise Information Systems ICEIS'07, June 12-16 2007.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  65. Published

    User-centered design of a mobile application for sharing life memories

    Olsson, T., Lehtonen, M., Pavel, D. & Väänänen-Vainio-Mattila, K., 2007, MC07 Mobility '07 Proceedings of the 4th international conference on mobile technology, applications, and systems and the 1st international symposium on Computer human interaction in mobile technology, Singapore, September 12 - 14, 2007. p. 524-531

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  66. Published

    Wille Visualisation System

    Haapaniemi, M., Huhtamäki, J., Kortemaa, A., Mannio, M., Nykänen, O. & Salonen, J., 2007

    Research output: Artistic and non-textual formSoftwareScientific

  67. 2006
  68. 3D mesh coding using multiple description scalar quantizers

    Bici, M. O. & Akar, G. B., 2006, Proceedings of the IEEE 14th Signal Processing, Communication and Applications Conference, SIU 2006, Antalya, Turkey, 17-19 April 2006. p. 4 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  69. A general model for gene regulatory networks with stochastic dynamics

    S. Ribeiro, A., Zhu, R. & Kauffman, S. A., 2006, In : WSEAS Transactions on Biology and Biomedicine. 3, 3, p. 261-266

    Research output: Contribution to journalArticleScientificpeer-review

  70. A general modeling strategy for gene regulatory networks with stochastic dynamics

    Ribeiro, A., Zhu, R. & Kauffman, S. A., 2006, In : Journal of Computational Biology. 13, 9, p. 1630-1639

    Research output: Contribution to journalArticleScientificpeer-review

  71. Alternative splicing variants of IRF-1 lacking wxons 7, 8, and 9 in cervical cancer

    Lee, E., Jo, M., Park, J., Zhang, W. & Lee, J. H., 2006, In : Biochemical and Biophysical Research Communications. 347, 4, p. 882-888

    Research output: Contribution to journalArticleScientificpeer-review

  72. An interaction between insulin-like growth factor binding protein 2 and integrin 5 is essential for IGFMP2-induced cell mobility

    Wang, G., Hu, L., Fuller, G. N. & Zhang, W., 2006, In : Journal of Biological Chemistry. 281, 20, p. 14085-14091

    Research output: Contribution to journalArticleScientificpeer-review

  73. A proposed model for small-world structural organization of mission teams and tasks in order to optimize efficiency and minimize costs

    S. Ribeiro, A. & Almeida, M., 2006, In : Acta Astronautica. 59, 8-11, p. 1086-1092

    Research output: Contribution to journalArticleScientificpeer-review

  74. Published

    A UML-based approach for abstracting interfaces to REST-like services

    Laitkorpi, M., Koskinen, J. & Systä, T., 2006, WCRE '06, Proceedings of the 13th Working Conference on Reverse Engineering, Benevento, Italy, Oct. 2006. p. 134-146

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  75. Chemical genetic identification of the IGF-linked pathway that is mediated by STAT6 and MFP2

    Choi, Y., Shimogawa, H., Murakami, K., Ramdas, L., Zhang, W., Qin, L. & Uesugi, M., 2006, In : Chemistry and Biology. 13, 3, p. 241-249

    Research output: Contribution to journalArticleScientificpeer-review

  76. Different perspectives on learning in information system development

    Pirinen, A. & Pekkola, S., 2006, Proceedings of the 29th Information Systems Research Seminar in Scandinavia, IRIS'29.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  77. Early effects of imatinib mesylate on the expression of insulin-like growth factor binding proetein 3 and psitrom emission tomography in patients with gastrointestinal stromal tumor

    Trent, J. C., Ramdas, L., Dupart, J. J., Hunt, K., Oyedeji, C., Taylor, E. E., Hu, L., Chen, L. L., Benjamin, R. S., Pollock, R. & Zhang, W., 2006, In : Cancer. 107, 8, p. 1898-1908

    Research output: Contribution to journalArticleScientificpeer-review

  78. End users in information systems development: Perceptions, involvement, practice and implications

    Isomäki, H. & Pekkola, S., 2006, Proceedings of Hawaii International Conference on System Sciences, 2006, Hawaii, HICSS-38.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  79. Evaluating end-user support: Validating the use of multiple media in a CSCW application

    Pekkola, S. & Isomäki, H., 2006, Proceedings of the 39th Annual Hawaii International Conference on System Sciences, 4-7 January 2006. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  80. Expression of Bcl-2 in gastrointestinal stromal tumors: correlation with progression-free survival in 81 patients treated with imatinib mesylate

    Steinert, D. M., Oyarzo, M., Wang, X., Choi, H., Thall, P. F., Medeiros, L. J., Raymond, A. K., Benjamin, R. S., Zhang, W. & Trent, J. C., 2006, In : Cancer. 106, 7, p. 1617-1623

    Research output: Contribution to journalArticleScientificpeer-review

  81. Inactivation of IkB contributes to transcriptional activation of spermidine/spermine N(1)-acetyltransferase

    Choi, W., Proctor, L., Xia, Q., Feng, Y., Gerner, E. W., Chiao, P. J., Hamilton, S. R. & Zhang, W., 2006, In : Molecular Carcinogenesis. 45, 9, p. 685-693

    Research output: Contribution to journalArticleScientificpeer-review

  82. Insulin-like growth factor binding protein 2 and 5 are differentially regulated in ovarian cancer of different histologic types

    Wang, H., Rosen, D. G., Fuller, G. N., Zhang, W. & Liu, J., 2006, In : Modern Pathology. 19, 9, p. 1149-1156

    Research output: Contribution to journalArticleScientificpeer-review

  83. Measuring information propagation and retention in Boolean networks and its implications to a model of human organizations

    S. Ribeiro, A., Este, R. A., Lloyd-Price, J. & Kauffman, S. A., 2006, In : WSEAS Transactions on Biology and Biomedicine. 5, 12, p. 2935-2942

    Research output: Contribution to journalArticleScientificpeer-review

  84. Mitochondrial respiration defects in cancer cells cause activation of Akt survival pathway through a redox-mediated mechanism

    Pelicano, H., Xu, R. H., Du, M., Feng, L., Sasaki, R., Carew, J. S., Hu, Y., Ramdas, L., Hu, L., Keating, M. J., Zhang, W., Plunkett, W. & Huang, P., 2006, In : Journal of Cell Biology. 175, 6, p. 913-923

    Research output: Contribution to journalArticleScientificpeer-review

  85. Multiple description scalar quantization based 3D mesh coding

    Bici, M. O. & Akar, G. B., 2006, Proceedings of 2006 IEEE International Conference on Image Processing, ICIP 2006, Atlanta, Georgia, USA, 8-11 October 2006. p. 553-556

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  86. Mutation screening of the androgen receptor promoter and untranslated regions in prostate cancer

    Waltering, K. K., Wallen, M. J., Tammela, T. L. J., Vessella, R. L. & Visakorpi, T., 2006, In : Prostate. 66, 15, p. 1585-1591

    Research output: Contribution to journalArticleScientificpeer-review

  87. Overexpression of IGFBP5, but not IGFBP3, correlates with the histologic grade of human diffuse glioma: a tissue microarray and immunohistochemical study

    Wang, H., Zhang, W. & Fuller, G. N., 2006, In : Technology in Cancer Research and Treatment. 5, 3, p. 195-200

    Research output: Contribution to journalArticleScientificpeer-review

  88. Published

    Performance Implications of Design Pattern Usage in Distributed Applications - Case Studies in J2EE and .NET.

    Rudzki, J. & Systä, T., 2006, ROSATEA '06 Proceedings of the ISSTA 2006 workshop on Role of software architecture for testing and analysis, Portland, Maine, USA, July 17-20, 2006. p. 1-11 11 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  89. Presenting the past: A framework for faciliatating the externalization and articulation of user activities in desktop environment

    Wieroos, K. & Pekkola, S., 2006, Proceedings of the Annual Hawaii International Conference on System Sciences, 4-7 January 2006, Hawaii. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  90. Published

    Profile-Based Approach to Support Comprehension of Software Behavior

    Koskinen, J., Kettunen, M. & Systä, T., 2006, Proceedings of the 14th IEEE International Conference on Program Comprehension (ICPC 2006), 14-16 June 2006, Athens, Greece. p. 212-224

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  91. RhG-CSF mobilized and apheresis-collected endothelial progenitor cells: a novel blood cell component for therapeutic vasculogenesis

    Korbling, M., Reuben, J. M., Gao, H., Lee, B. N., harris, D. M., Cogdell, D., Giralt, S. A., Khouri, I. F., Saliba, R. M., Champlin, R. E., Zhang, W. & Estrov, Z., 2006, In : Transfusion. 46, p. 1795-1802

    Research output: Contribution to journalArticleScientificpeer-review

  92. Screening of genetic and expression alterations of SRC1 gene in prostate cancer

    Mäki, H. E., Waltering, K. K., Wallen, M. J., Martikainen, P. M., Tammela, T. L. J., van Weerden, W. M., Vessella, R. L. & Visakorpi, T., 2006, In : Prostate. 66, 13, p. 1391-1398 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  93. Shrew 1 gene, frequently deleted in oligodendrogliomas, functions to inhibit cell adhesion and migration

    McDonald, J. M., Dunlap, S., Cogdell, D., Dumnire, V., Wei, Q., Starzinski-Powitz, A., Sawaya, R., Bruner, J., Fuller, G. N., Aldape, K. & Zhang, W., 2006, In : Cancer Biology and Therapy. 5, 3, p. 300-304

    Research output: Contribution to journalArticleScientificpeer-review

  94. Published

    Three-dimensional monochromatic light field synthesis with a deflectable mirror array device

    Ulusoy, E., Uzunov, V., Onural, L., Ozaktas, H. M. & Gotchev, A., 2006, Proceedigs of SPIE Photon Management II, Strasbourg, France, 20 April 2006. Sheridan, J. T. & Wyrowski, F. (eds.). p. 12 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  95. Towards formalised end-user participation in information systems development process: grdging the gap between participatory desgin and ISD methodologies

    Pekkola, S., Kaarilahti, N. & Pohjola, P., 2006, 2006 Participatory Desgin Conference, PDC 2006, August 1-5, 2006, Trento, Italy. p. 21-30

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  96. Transcriptional activation of the carboxylesterase 2 gene by the p53 pathway

    Choi, W., Cogdell, D., Feng, Y., Hamilton, S. R. & Zhang, W., 2006, In : Cancer Biology and Therapy. 5, 11, p. 1450-1456

    Research output: Contribution to journalArticleScientificpeer-review

  97. Vasculogenic mimicry is associated with high tumor grade, invasion and metastasis, and shor survival in patients with hepatocellular carcinoma

    Sun, B. C., Zhang, S. W., Zhang, D. F., Du, J., Guo, H., Hao, X. L., Zhang, W. & Hao, X. S., 2006, In : Oncology Report. 16, 4, p. 693-698

    Research output: Contribution to journalArticleScientificpeer-review

  98. 2005
  99. Published

    A&O - Virtual learning environment

    Ala-Rantala, M., Levasma, J., Mäkelä, T., Nykänen, O., Pohjanen, L., Pohjolainen, S., Ruokamo, H., Salonen, J. & Silius, K., 2005

    Research output: Artistic and non-textual formSoftwareScientific

  100. Alterations in transcription clusters underlie development of bladder cancer along papillary and non-papillary pathways

    Kim, J-H., Tuziak, T., Hu, L., Gold, D., Wang, Z., Bondaruk, J., Fuller, G. N., Dinney, C., Grossman, H. B., Baggerly, K., Zhang, W. & Czerniak, B., 2005, In : Laboratory Investigation. 85, 4, p. 532-549

    Research output: Contribution to journalArticleScientificpeer-review

  101. Analysis of dose-response effects on gene expression data with comparison of two microarray platforms

    Hu, J., Kapoor, M., Zhang, W., Hamilton, S. R. & Coombes, K., 2005, In : Bioinformatics. 21, 17, p. 3524-3529

    Research output: Contribution to journalArticleScientificpeer-review

  102. Androgen receptor modifications in prostate cancer cells upon long-term androgen ablation and antiandrogen treatment

    Marques, R. B., Erkens-Schulze, S., de Ridder, C. M., Hermans, K. G., Waltering, K., Visakorpi, T., Trapman, J., Romijn, J. C., van Weerden, W. M. & Jenster, G., 2005, In : International Journal of Cancer. 117, 2, p. 221-229

    Research output: Contribution to journalArticleScientificpeer-review

  103. A single-gene biomarker identifies breast cancers associated with immature cell type and short duration of prior breastfeeding

    Symmans, W. F., Fiterman, D. J., Anderson, S. K., Ayers, M., Rouzier, R., Dunmire, C., Stec, J., Valero, V., Sneige, N., Albarracin, C., Wu, Y., Ross, J. S., Wagner, P., Theriault, R. L., Arun, B., Kuerer, H., Hess, K. R., Zhang, W., Hortobagyi, G. N. & Pusztai, L., 2005, In : Endocrine-Related Cancer. 12, p. 1059-1069

    Research output: Contribution to journalArticleScientificpeer-review

  104. Attenuated expression of DFFB is a hallmark of oligodendrogrliomas with 1p-allelic loss

    McDonald, J. M., Dunmire, C., Cogdell, D., Sawaya, R., Bruner, J., Fuller, G. N., Aldape, K. & Zhang, W., 2005, In : Molecular Cancer. 4, 35, p. 5 p

    Research output: Contribution to journalArticleScientificpeer-review

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