Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2008
  2. Somatic mutation analysis of MYHI I in breast and prostate cancer

    Alhopuro, P., Karhu, A., Winqvist, R., Waltering, K., Visakorpi, T. & Aaltonen, L. A., 2008, In : BMC Cancer. 8, 263, p. 5 p

    Research output: Contribution to journalArticleScientificpeer-review

  3. The hOGGI Ser326Cys polymorphism and lung cancer risk: a meta-analysis

    Li, H. X., Hao, X. S., Zhang, W., Wei, Q. & Chen, K., 2008, In : Cancer Epidemiology Biomarkers and Prevention. 17, 7, p. 1739-1745

    Research output: Contribution to journalArticleScientificpeer-review

  4. Time-frequency analysis of the non-stationary multifrequency signal by using parametrical short-time ispectral density estimation

    Molchanov, P. & Totsky, A., 2008, Proceedings of the International Conference TCSET 2008, Modern Problems of Radio Engineering, Telecommunications and Computer Science, Lviv-Slavsko, Ukraine, 19-23 February 2008. p. 276-279

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  5. Towards interruptionless experiments on MEAs

    Mikkonen, J. E., Kandler, S., Okujeni, S., Weihberger, O. & Egert, U., 2008, Proceedings of the 6th International Meeting on Substrate-Integrated Micro Electrode Arrays, MEA Meeting 2008, 8-11 July 2008, Reutlingen, Germany. p. 331-332

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  6. Published

    Transformational pattern system - some assembly required

    Siikarla, M. & Systä, T., 2008, In : Electronical Notes in Theoretical Computing. 211, p. 63-74

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    TTY-Piiri - Social web service for TUT students

    Huhtamäki, J., Miilumäki, T., Meriläinen, J., Pohjolainen, S., Silius, K. & Tebest, T., 2008

    Research output: Artistic and non-textual formSoftwareScientific

  8. Published

    Vaikuttamistaidot: Online version of a material package on skills of e-democracy (Vaikuttamistaidot)

    Huhtamäki, J., Meriläinen, J., Silius, K. & Tebest, T., 2008

    Research output: Artistic and non-textual formSoftwareScientific

  9. WWOX tumor suppressor gene

    Yang, J. & Zhang, W., 2008, In : Histology and Histopathology. 23, 7, p. 877-882

    Research output: Contribution to journalArticleScientificpeer-review

  10. 2007
  11. Activation of polyamine catabolism by N1, N11-diethylnorspermine leads to cell death in glioblastoma

    Jiang, R., Choi, W., Khan, A., Hess, K., Gerner, W. W., Casero, R., Yung, W. K., Hamilton, S. R. & Zhang, W., 2007, In : International Journal of Oncology. 31, 2, p. 431-440

    Research output: Contribution to journalArticleScientificpeer-review

  12. Activation of polyamine catabolism by N1, N11-dietylnorspermine alters the cellular localization of mTOR and downregulates mTOR protein level in glioblastoma cells

    Jiang, R., Choi, W., Hu, L., Gerner, W. W., Hamilton, S. R. & Zhang, W., 2007, In : Cancer Biology and Therapy. 6, 10, p. 1644-1648

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Applying template meta-programming techniques for a domain-specific visual language - an industrial experience report

    Karaila, M. & Systä, T., 2007, 29th International Conference on Software Engineering (ICSE '07), Minneapolis, MN, USA, 20-26 May 2007. p. 571-580

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  14. Published

    Applying triple graph grammars for pattern-based workflow model transformations

    Lohmann, C., Greenyer, J., Jiang, J. & Systä, T., 2007, In : Journal of Object Technology, Special Issue: TOOLS EUROPE 2007. 6, 9, p. 253-273

    Research output: Contribution to journalArticleScientificpeer-review

  15. Assessment of automated scintigram alignment in the stackgram domain for cardiac stress-rest SPECT studies

    Happonen, A. P. & Koskinen, M. O., 2007, In : Computerized Medical Imaging and Graphics. 31, 8, p. 595-606

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Avustajaportti - Verkkopalvelu henkilökohtaisen avun välittämiseen

    Häkkinen, P., Kaikuvuo, I., Mäkelä, T., Mäkinen, R., Silius, K. & Tervakari, A-M., 2007

    Research output: Artistic and non-textual formSoftwareScientific

  17. CellLine, a stochastic cell lineage simulator

    S. Ribeiro, A., Charlebois, D. A. & Lloyd-Price, J., 2007, In : Bioinformatics. 23, 24, p. 3409-3411

    Research output: Contribution to journalArticleScientificpeer-review

  18. Comparative analysis of genes regulated in acute myelomonocytic leukemia with and without inv(16)(p13q22) using microarray techniques, real-time PCR, immunohistochemistry, and flow cytometry immunophenotyping

    Sun, X., Zhang, W., Ramdas, L., Stivers, D. N., Jones, D. M., Kantarjian, H. M., Estey, E. H., Vadhan-Raj, S., Medeiros, L. J. & Bueso-Ramos, C. E., 2007, In : Modern Pathology. 20, 8, p. 811-820

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Computational methods for estimation of cell cycle phase distributions of yeast cells

    Niemistö, A., Nykter, M., Aho, T., Jalovaara, H., Marjanen, K., Ahdesmäki, M., Ruusuvuori, P., Tiainen, M., Linne, M-L. & Yli-Harja, O., 2007, In : Eurasip Journal on Bioinformatics and Systems Biology. 2007, 46150, p. 9 p

    Research output: Contribution to journalArticleScientificpeer-review

  20. Differentially expressed genes between primary cancer and paired lymph node metastases predict clinical outcome of node-positive breast cancer patients

    Feng, Y., Sun, B., Li, X., Zhang, L., Niu, Y., Xiao, C., Fang, Z., Ning, L., Wang, Y., Cheng, J., Zhang, W. & Hao, X., 2007, In : Breast Cancer Research and Treatment. 103, 3, p. 319-329

    Research output: Contribution to journalArticleScientificpeer-review

  21. Distribution and viral load of eight oncogenic types of human papillomavirus (HPV) and HPV 16 integration status in cervical intraepithelial neoplasia and carcinoma

    Guo, M., Sneige, N., Silva, E., Jan, Y. J., Cogdell, D., Lin, E., Luthra, R. & Zhang, W., 2007, In : Modern Pathology. 20, p. 256-266

    Research output: Contribution to journalArticleScientificpeer-review

  22. Effects of coupling strength and space on the dynamics of coupled toggle switches in stochastic gene networks with multiple-delayed reactions

    S. Ribeiro, A., 2007, In : Physical Review E. 75, 6, 061903.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Effects of microarray noise on inference efficiency of a stochastic model of gene networks

    Charlebois, D. A., S. Ribeiro, A., Lehmussola, A., Lloyd-Price, J., Yli-Harja, O. & Kauffman, S. A., 2007, In : WSEAS Transactions on Biology and Biomedicine. 4, 2, p. 15-21

    Research output: Contribution to journalArticleScientificpeer-review

  24. Expression level of insulin-like growth factor binding protein 5 mRNA is a prognostic factor for breast cancer

    Li, X., Cao, X., Zhang, W. & Feng, Y., 2007, In : Cancer Science. 98, 10, p. 1592-1596

    Research output: Contribution to journalArticleScientificpeer-review

  25. Expression of receptor tyrosine kinases and apoptotic molecules in rhabdomyosarcoma: correlation with overall survival in 105 patients

    Armistead, P. M., Salganick, J., Roh, J. S., Steinert, D. M., Patel, S., Munsell, M., El-Naggar, A., Benjamin, R. S., Zhang, W. & Trent, J. C., 2007, In : Cancer. 110, 10, p. 2293-2303

    Research output: Contribution to journalArticleScientificpeer-review

  26. Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas

    Price, N., Trent, J., El-Naggar, A., Cogdell, D., Taylor, E. E., Hunt, K., Pollock, R., Hood, L., Shmulevich, I. & Zhang, W., 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, p. 3414-3419

    Research output: Contribution to journalArticleScientificpeer-review

  27. Independent motile microplast formation correlates with glioma cell invasiveness

    Yount, G., Taft, R., Luu, T., Rachlin, K., Moore, D. & Zhang, W., 2007, In : Journal of Neuro-Oncology. 81, 2, p. 113-121

    Research output: Contribution to journalArticleScientificpeer-review

  28. Insulin-like growth factor binding protein 2 promotes glioma development and progression

    Dunlap, S. M., Celestino, J., Wang, H., Jiang, R., Holland, E., Fueller, G. N. & Zhang, W., 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 28, p. 11736-11741

    Research output: Contribution to journalArticleScientificpeer-review

  29. In vitro expression levels of cell cycle checkpoint proteins are associated with cellular DNA repair capacity in peripheral blood lymphocytes: a multivariate analysis

    Fan, Y. H., Hu, Z. B., Li, C., Wang, L. E., Guo, Z., Qiao, Y., Zhang, L., Zhang, W., Mao, L. & Wei, Q. Y., 2007, In : Journal of Proteome Research. 6, 4, p. 1560-1567

    Research output: Contribution to journalArticleScientificpeer-review

  30. Lääketieteen kirjallisuustietokannat ja tiedonhaku

    Heikkinen, J., Isohanni, M. & Miettunen, J., 2007, In : Suomen Lääkärilehti. 62, 22, p. 2156-2170

    Research output: Contribution to journalReview ArticleScientificpeer-review

  31. Learning and distributed systems development

    Pekkola, S., 2007, ECSCW'07 workshop on The Challenges of Collaborative Work in Global Software Development.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  32. MicroRNA expression profiling in prostate cancer

    Porkka, K. P., Pfeiffer, M. J., Waltering, K. K., Vessella, R. I., Tammela, T. L. J. & Visakorpi, T., 2007, In : Cancer Research. 67, 13, p. 6130-6135

    Research output: Contribution to journalArticleScientificpeer-review

  33. Molecular approaches to resolve diagnostic dilemmas: the case of gastrointestinal stromal tumor and leiomyosarcoma

    Trent, J., Lazar, A. J. F. & Zhang, W., 2007, In : Future Oncology. 3, 6, p. 629-637

    Research output: Contribution to journalArticleScientificpeer-review

  34. Mutation analysis of aryl hydrocarbon receptor interacting protein (AIP) gene in colorectal, breast, and prostate cancers

    Georgitsi, M., Karhu, A., Winqvist, R., Visakorpi, T., Waltering, K., Vahteristo, P., Launonen, V. & Aaltonen, L. A., 2007, In : British Journal of Cancer. 96, 2, p. 352-356

    Research output: Contribution to journalArticleScientificpeer-review

  35. Noisy attractors and ergodic sets in models of gene regulatory networks

    S. Ribeiro, A. & Kauffman, S. A., 2007, In : Journal of Theoretical Biology. 247, 4, p. 743-755

    Research output: Contribution to journalArticleScientificpeer-review

  36. Online interaction with in vitro neuronal networks

    Weihberger, O., Mikkonen, J. E. & Egert, U., 2007, Proceedings of the Seventh Göttingen Meeting of the German Neuroscience Society, 29 March - 1 April 2007, Göttingen, Germany. p. 1 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  37. Published

    Open Source Contributions as Platform Specialization Units

    Hammouda, I. & Mikkonen, T., 2007, Proceedings of OSSPL 2007, Limerick, Ireland, June 2007.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  38. Published

    Polkka-blogit - Opetuskäyttöön TTY:lle räätälöity blogijärjestelmä

    Huhtamäki, J., Häkkinen, P., Kaikuvuo, I., Pohjanen, L., Rasi, E., Saarela, L., Silius, K., Tervakari, A-M. & Zetterberg, S., 2007

    Research output: Artistic and non-textual formSoftwareScientific

  39. Polymorphic TP53BP1 and TP53 gene interactions associated with risk of squamous cell carcinoma of the head and neck

    Chen, K. X., Hu, Z., Wang, L. E., Zhang, W., Sturgis, E. M. & Wei, Q., 2007, In : Clinical Cancer Research. 13, 14, p. 4300-4305

    Research output: Contribution to journalArticleScientificpeer-review

  40. SGN Sim, a stochastic genetic networks simulator

    S. Ribeiro, A. & Lloyd-Price, J., 2007, In : Bioinformatics. 23, 6, p. 777-779

    Research output: Contribution to journalArticleScientificpeer-review

  41. Single nucleotide polymorphisms at the TP53-binding or responsive promoter regions of BAX and BCL2 genes and risk of squamous cell carcinoma of the head and neck

    Chen, K., Hu, Z., Wang, L., Sturgis, E. M., El-Naggar, A. K., Zhang, W. & Wei, Q., 2007, In : Carcinogenesis. 28, 9, p. 2008-2012

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published
  43. Studying genetic regulatory networks at the molecular level: Delayed reaction stochastic models

    Zhu, R., S. Ribeiro, A., Salahub, D. & Kauffman, S. A., 2007, In : Journal of Theoretical Biology. 246, 4, p. 725-745

    Research output: Contribution to journalArticleScientificpeer-review

  44. Studying utility of personal usage-history: A software tool for enabling empirical research

    Wideroos, K. & Pekkola, S., 2007, In : Lecture Notes in Computer Science. 4550, p. 976-984

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Time-interleaved simulcast and redundant intra picture insertion for reducing tune-in delay in DVB-H

    Malamal Vadakital, V. K., Hannuksela, M. M. & Gabbouj, M., 2007, Proceedings of the 16th International Packet Video Workshop, Packet Video 2007, Lausanne, Swizerland, 12-13 November 2007. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  46. Towards industrial service business: Challenges in Designing ICT support for the networks of companies

    Hiippavuori, S., Hänninen, M., Pekkola, S. & Luostarinen, K., 2007, Proceedings of the 9th International Conference on Enterprise Information Systems ICEIS'07, June 12-16 2007.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  47. Published

    User-centered design of a mobile application for sharing life memories

    Olsson, T., Lehtonen, M., Pavel, D. & Väänänen-Vainio-Mattila, K., 2007, MC07 Mobility '07 Proceedings of the 4th international conference on mobile technology, applications, and systems and the 1st international symposium on Computer human interaction in mobile technology, Singapore, September 12 - 14, 2007. p. 524-531

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  48. Published

    Wille Visualisation System

    Haapaniemi, M., Huhtamäki, J., Kortemaa, A., Mannio, M., Nykänen, O. & Salonen, J., 2007

    Research output: Artistic and non-textual formSoftwareScientific

  49. 2006
  50. 3D mesh coding using multiple description scalar quantizers

    Bici, M. O. & Akar, G. B., 2006, Proceedings of the IEEE 14th Signal Processing, Communication and Applications Conference, SIU 2006, Antalya, Turkey, 17-19 April 2006. p. 4 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  51. A general model for gene regulatory networks with stochastic dynamics

    S. Ribeiro, A., Zhu, R. & Kauffman, S. A., 2006, In : WSEAS Transactions on Biology and Biomedicine. 3, 3, p. 261-266

    Research output: Contribution to journalArticleScientificpeer-review

  52. A general modeling strategy for gene regulatory networks with stochastic dynamics

    Ribeiro, A., Zhu, R. & Kauffman, S. A., 2006, In : Journal of Computational Biology. 13, 9, p. 1630-1639

    Research output: Contribution to journalArticleScientificpeer-review

  53. Alternative splicing variants of IRF-1 lacking wxons 7, 8, and 9 in cervical cancer

    Lee, E., Jo, M., Park, J., Zhang, W. & Lee, J. H., 2006, In : Biochemical and Biophysical Research Communications. 347, 4, p. 882-888

    Research output: Contribution to journalArticleScientificpeer-review

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