Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2006
  2. Early effects of imatinib mesylate on the expression of insulin-like growth factor binding proetein 3 and psitrom emission tomography in patients with gastrointestinal stromal tumor

    Trent, J. C., Ramdas, L., Dupart, J. J., Hunt, K., Oyedeji, C., Taylor, E. E., Hu, L., Chen, L. L., Benjamin, R. S., Pollock, R. & Zhang, W., 2006, In : Cancer. 107, 8, p. 1898-1908

    Research output: Contribution to journalArticleScientificpeer-review

  3. End users in information systems development: Perceptions, involvement, practice and implications

    Isomäki, H. & Pekkola, S., 2006, Proceedings of Hawaii International Conference on System Sciences, 2006, Hawaii, HICSS-38.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  4. Evaluating end-user support: Validating the use of multiple media in a CSCW application

    Pekkola, S. & Isomäki, H., 2006, Proceedings of the 39th Annual Hawaii International Conference on System Sciences, 4-7 January 2006. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  5. Expression of Bcl-2 in gastrointestinal stromal tumors: correlation with progression-free survival in 81 patients treated with imatinib mesylate

    Steinert, D. M., Oyarzo, M., Wang, X., Choi, H., Thall, P. F., Medeiros, L. J., Raymond, A. K., Benjamin, R. S., Zhang, W. & Trent, J. C., 2006, In : Cancer. 106, 7, p. 1617-1623

    Research output: Contribution to journalArticleScientificpeer-review

  6. Inactivation of IkB contributes to transcriptional activation of spermidine/spermine N(1)-acetyltransferase

    Choi, W., Proctor, L., Xia, Q., Feng, Y., Gerner, E. W., Chiao, P. J., Hamilton, S. R. & Zhang, W., 2006, In : Molecular Carcinogenesis. 45, 9, p. 685-693

    Research output: Contribution to journalArticleScientificpeer-review

  7. Insulin-like growth factor binding protein 2 and 5 are differentially regulated in ovarian cancer of different histologic types

    Wang, H., Rosen, D. G., Fuller, G. N., Zhang, W. & Liu, J., 2006, In : Modern Pathology. 19, 9, p. 1149-1156

    Research output: Contribution to journalArticleScientificpeer-review

  8. Measuring information propagation and retention in Boolean networks and its implications to a model of human organizations

    S. Ribeiro, A., Este, R. A., Lloyd-Price, J. & Kauffman, S. A., 2006, In : WSEAS Transactions on Biology and Biomedicine. 5, 12, p. 2935-2942

    Research output: Contribution to journalArticleScientificpeer-review

  9. Mitochondrial respiration defects in cancer cells cause activation of Akt survival pathway through a redox-mediated mechanism

    Pelicano, H., Xu, R. H., Du, M., Feng, L., Sasaki, R., Carew, J. S., Hu, Y., Ramdas, L., Hu, L., Keating, M. J., Zhang, W., Plunkett, W. & Huang, P., 2006, In : Journal of Cell Biology. 175, 6, p. 913-923

    Research output: Contribution to journalArticleScientificpeer-review

  10. Multiple description scalar quantization based 3D mesh coding

    Bici, M. O. & Akar, G. B., 2006, Proceedings of 2006 IEEE International Conference on Image Processing, ICIP 2006, Atlanta, Georgia, USA, 8-11 October 2006. p. 553-556

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  11. Mutation screening of the androgen receptor promoter and untranslated regions in prostate cancer

    Waltering, K. K., Wallen, M. J., Tammela, T. L. J., Vessella, R. L. & Visakorpi, T., 2006, In : Prostate. 66, 15, p. 1585-1591

    Research output: Contribution to journalArticleScientificpeer-review

  12. Overexpression of IGFBP5, but not IGFBP3, correlates with the histologic grade of human diffuse glioma: a tissue microarray and immunohistochemical study

    Wang, H., Zhang, W. & Fuller, G. N., 2006, In : Technology in Cancer Research and Treatment. 5, 3, p. 195-200

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Performance Implications of Design Pattern Usage in Distributed Applications - Case Studies in J2EE and .NET.

    Rudzki, J. & Systä, T., 2006, ROSATEA '06 Proceedings of the ISSTA 2006 workshop on Role of software architecture for testing and analysis, Portland, Maine, USA, July 17-20, 2006. p. 1-11 11 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  14. Presenting the past: A framework for faciliatating the externalization and articulation of user activities in desktop environment

    Wieroos, K. & Pekkola, S., 2006, Proceedings of the Annual Hawaii International Conference on System Sciences, 4-7 January 2006, Hawaii. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  15. Published

    Profile-Based Approach to Support Comprehension of Software Behavior

    Koskinen, J., Kettunen, M. & Systä, T., 2006, Proceedings of the 14th IEEE International Conference on Program Comprehension (ICPC 2006), 14-16 June 2006, Athens, Greece. p. 212-224

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  16. RhG-CSF mobilized and apheresis-collected endothelial progenitor cells: a novel blood cell component for therapeutic vasculogenesis

    Korbling, M., Reuben, J. M., Gao, H., Lee, B. N., harris, D. M., Cogdell, D., Giralt, S. A., Khouri, I. F., Saliba, R. M., Champlin, R. E., Zhang, W. & Estrov, Z., 2006, In : Transfusion. 46, p. 1795-1802

    Research output: Contribution to journalArticleScientificpeer-review

  17. Screening of genetic and expression alterations of SRC1 gene in prostate cancer

    Mäki, H. E., Waltering, K. K., Wallen, M. J., Martikainen, P. M., Tammela, T. L. J., van Weerden, W. M., Vessella, R. L. & Visakorpi, T., 2006, In : Prostate. 66, 13, p. 1391-1398 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Shrew 1 gene, frequently deleted in oligodendrogliomas, functions to inhibit cell adhesion and migration

    McDonald, J. M., Dunlap, S., Cogdell, D., Dumnire, V., Wei, Q., Starzinski-Powitz, A., Sawaya, R., Bruner, J., Fuller, G. N., Aldape, K. & Zhang, W., 2006, In : Cancer Biology and Therapy. 5, 3, p. 300-304

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Three-dimensional monochromatic light field synthesis with a deflectable mirror array device

    Ulusoy, E., Uzunov, V., Onural, L., Ozaktas, H. M. & Gotchev, A., 2006, Proceedigs of SPIE Photon Management II, Strasbourg, France, 20 April 2006. Sheridan, J. T. & Wyrowski, F. (eds.). p. 12 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  20. Towards formalised end-user participation in information systems development process: grdging the gap between participatory desgin and ISD methodologies

    Pekkola, S., Kaarilahti, N. & Pohjola, P., 2006, 2006 Participatory Desgin Conference, PDC 2006, August 1-5, 2006, Trento, Italy. p. 21-30

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  21. Transcriptional activation of the carboxylesterase 2 gene by the p53 pathway

    Choi, W., Cogdell, D., Feng, Y., Hamilton, S. R. & Zhang, W., 2006, In : Cancer Biology and Therapy. 5, 11, p. 1450-1456

    Research output: Contribution to journalArticleScientificpeer-review

  22. Vasculogenic mimicry is associated with high tumor grade, invasion and metastasis, and shor survival in patients with hepatocellular carcinoma

    Sun, B. C., Zhang, S. W., Zhang, D. F., Du, J., Guo, H., Hao, X. L., Zhang, W. & Hao, X. S., 2006, In : Oncology Report. 16, 4, p. 693-698

    Research output: Contribution to journalArticleScientificpeer-review

  23. 2005
  24. Published

    A&O - Virtual learning environment

    Ala-Rantala, M., Levasma, J., Mäkelä, T., Nykänen, O., Pohjanen, L., Pohjolainen, S., Ruokamo, H., Salonen, J. & Silius, K., 2005

    Research output: Artistic and non-textual formSoftwareScientific

  25. Alterations in transcription clusters underlie development of bladder cancer along papillary and non-papillary pathways

    Kim, J-H., Tuziak, T., Hu, L., Gold, D., Wang, Z., Bondaruk, J., Fuller, G. N., Dinney, C., Grossman, H. B., Baggerly, K., Zhang, W. & Czerniak, B., 2005, In : Laboratory Investigation. 85, 4, p. 532-549

    Research output: Contribution to journalArticleScientificpeer-review

  26. Analysis of dose-response effects on gene expression data with comparison of two microarray platforms

    Hu, J., Kapoor, M., Zhang, W., Hamilton, S. R. & Coombes, K., 2005, In : Bioinformatics. 21, 17, p. 3524-3529

    Research output: Contribution to journalArticleScientificpeer-review

  27. Androgen receptor modifications in prostate cancer cells upon long-term androgen ablation and antiandrogen treatment

    Marques, R. B., Erkens-Schulze, S., de Ridder, C. M., Hermans, K. G., Waltering, K., Visakorpi, T., Trapman, J., Romijn, J. C., van Weerden, W. M. & Jenster, G., 2005, In : International Journal of Cancer. 117, 2, p. 221-229

    Research output: Contribution to journalArticleScientificpeer-review

  28. A single-gene biomarker identifies breast cancers associated with immature cell type and short duration of prior breastfeeding

    Symmans, W. F., Fiterman, D. J., Anderson, S. K., Ayers, M., Rouzier, R., Dunmire, C., Stec, J., Valero, V., Sneige, N., Albarracin, C., Wu, Y., Ross, J. S., Wagner, P., Theriault, R. L., Arun, B., Kuerer, H., Hess, K. R., Zhang, W., Hortobagyi, G. N. & Pusztai, L., 2005, In : Endocrine-Related Cancer. 12, p. 1059-1069

    Research output: Contribution to journalArticleScientificpeer-review

  29. Attenuated expression of DFFB is a hallmark of oligodendrogrliomas with 1p-allelic loss

    McDonald, J. M., Dunmire, C., Cogdell, D., Sawaya, R., Bruner, J., Fuller, G. N., Aldape, K. & Zhang, W., 2005, In : Molecular Cancer. 4, 35, p. 5 p

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Basis for tool support for product-line processes

    Harsu, M. & Peltonen, J., 2005, Tampere: Tampere University of Technology. 43 p. (Tampere University of Technology. Institute of Software Systems. Report; vol. 38)

    Research output: Book/ReportCommissioned reportProfessional

  31. Combination of 5-fluorouracil and N1-acetyltransferase expression, depletes polyamines, and synergistically induces apoptosis in colon carcinoma cells

    Choi, W., Gerner, E., Ramadas, L., Dupart, J., Carew, J., Huang, P., Zhang, W. & Hamilton, S. R., 2005, In : Journal of Biological Chemistry. 280, 5, p. 3295-3304

    Research output: Contribution to journalArticleScientificpeer-review

  32. Constitutive activation of JAK3/STAT3 in colon carcinoma tumors and cell lines: inhibition of JAK3/STAT3 signaling induces apoptosis and cell cycle arrest of colon carcinoma

    Lin, Q., Lai, R., Li, C., Chirieac, L. R., Grammatikakis, I., Thomazy, V. A., Rassidakis, G. Z., Zhang, W., Fujio, Y., Kunisada, K., Hamilton, S. R. & Amin, H. M., 2005, In : American Journal of Pathology. 167, 4, p. 969-980

    Research output: Contribution to journalArticleScientificpeer-review

  33. Effects of lattice structure in the dynamics of coupled elements

    S. Ribeiro, A. & Lind, P. G., 2005, In : Physica Scripta. T118, p. 165-167

    Research output: Contribution to journalArticleScientificpeer-review

  34. Elevated expressions of p21 (WAFI/Cip1) in hormonally active pituitary adenomas

    Neto, A. G., McCutcheon, I. E., Vang, R., Spencer, M. L., Zhang, W. & Fuller, G. N., 2005, In : Annals of Diagnostic Pathology. 9, p. 6-10

    Research output: Contribution to journalArticleScientificpeer-review

  35. End users in information systems development: Perceptions, involvement, practice and implications

    Isomäki, H. & Pekkola, S., 2005, Proceedings of Hawaii International Conference on System Sciences, 3.-6.12.2005, Hawaii. p. p. 218

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  36. Evaluation of disparity map characteristics for stereo image coding

    Aksay, A., Bici, M. O. & Akar, G. B., 2005, Proceedings of IEEE International Conference on Image Processing, ICIP 2005, Genoca, Italy, 11-14 September 2005. p. 4 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  37. Expression of CD29 on lymphoma cells and/or CD36 on microvascular endothels correlates with high serum LDH level in diffuse large B-cell lymphomas (DLBSLs) and is frequent in de novo CD5-positive DLBCLs

    Ueno, S., Yamaguchi, M., Kimura, M., Odagiri, H., Shiraki, K., Uemoto, S., Nakamura, N., Zhang, W., Shiku, H. & Kobayashi, T., 2005, In : International Journal of Oncology. 27, 5, p. 1241-1246

    Research output: Contribution to journalArticleScientificpeer-review

  38. Human orientation in Scandinavian IS research as it appears in SJIS

    Koaskinen, M., Liimatainen, K. & Pekkola, S., 2005, Proceedings of the 28th Information Systems Research Seminar in Scandinavia, IRIS'28, Kristiansand, Norway, August 6-9, 2005.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  39. Imatinib mesylate: targeted therapy of gastrointestinal stromal tumor

    Trent, J., Dupart, J. & Zhang, W., 2005, In : Current Cancer Therapy Reviews. 1, p. 93-108 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Inactivation of the invasion inhibitory protein gene IIp45 by alternative splicing in gliomas

    Song, S. W., Fuller, G. N., Zheng, H. & Zhang, W., 2005, In : Clinical Cancer Research. 65, p. 3562-3567

    Research output: Contribution to journalArticleScientificpeer-review

  41. Kognitiivisen verkkopedagogiikan erityiskysymyksiä

    Niemelä, M., Pekkola, S. & Wahlstedt, A., 2005, Kognitiivisen verkkopedagogiikan erityiskysymyksiä. Marttunen, M. & Marjomaa, E. (eds.). Joensuu University Press, p. 18-33

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  42. Published

    Matematiikkajumppa - Automatically generated STACK exercises in Mathematics Remedial Instruction

    Kangas, J., Miilumäki, T., Mäkelä, T., Pohjolainen, S., Rautiainen, E., Turunen, E. & Vattulainen, K., 2005

    Research output: Artistic and non-textual formSoftwareScientific

  43. Nuances of human-centredness in information systems development

    Isomäki, H. & Pekkola, S., 2005, Proceedings of the Annual Hawaii International Conference on System Sciences, 3-6 January 2005, Hawaii. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  44. Published

    Opiskelijan myyttiset 1 600 tuntia

    Valmari, A., 2005, In : Tietojenkäsittelytiede. 24, p. 4-7

    Research output: Contribution to journalArticleScientificpeer-review

  45. Overexpression of tropomysin-related kinase B in metastatick human pancreatic cancer cells

    Sclabas, G. M., Frederick, W. A. I., Fujioka, S., Schmidt, C., Yang, W., Yokoi, K., Evans, D. B., Denny, A., Abbruzzese, J., Hess, K. R., Zhang, W., Fidler, I. J. & Chiao, P., 2005, In : Clinical Cancer Research. 11, p. 440-449

    Research output: Contribution to journalArticleScientificpeer-review

  46. Reflective user in practice: Explorations from two cases

    Pekkola, S., 2005, International reports on socio-informatics. Dittrich, Y., Dourish, P., Morch, A., Pipek, V., Stevens, G. & Törpel, B. (eds.). p. 94-98

    Research output: Chapter in Book/Report/Conference proceedingChapterScientific

  47. Published

    Specifying UML Profile for Distributed Communicating Systems and Communication Protocols

    Leppänen, S., Ilic, D., Malik, Q., Systä, T. & Troubitsyna, E., 2005, Workshop Proceedings, 2005 ECMDA, European Conference on Model Driven Architecture, Workshop on "Consistency in Model Driven Engineering" - C@MoDE, November 7th, 2005, Nuremberg, Germany. p. 16 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  48. The prognostic impact of histology and 1p/19q status in anaplastic oligodendroglial tumors

    McDonald, J. M., See, S., Tremont, I., Colman, H., Gilbert, M., Groves, M., Burger, P., Louis, D. N., Giannini, C., Fuller, G. N., Passe, S., Blair, H., jenkins, R. B., Yang, H., Ledoux, A., Tipnis, U., Zhang, W., Hess, K. & Aldape, K., 2005, In : Cancer. 104, 7, p. 1468-1477

    Research output: Contribution to journalArticleScientificpeer-review

  49. The signaling network of tumor invasion

    Wang, G. K. & Zhang, W., 2005, In : Histology and Histopathology. 20, p. 593-602

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    TOIVO-osaamiskartoitusväline: Verkkopalvelu työnhakijoiden osaamisen kartoittamiseen

    Häkkinen, P., Silius, K., Tervakari, A-M. & Vilen, J., 2005

    Research output: Artistic and non-textual formSoftwareScientific

  51. Using disparity map compensation for stereo image coding

    Aksay, A., Bici, M. O. & Akar, G. B., 2005, Proceedings of the IEEE 13th Signal Processing, Communication and Applications Conference, SIU 2005, Kayseri, Turkey, May 2005. p. 1-4 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  52. Published

    Verkkopalvelun käyttökelpoisuuden arvioiminen -oppimateriaali: Tampereen teknillinen yliopisto

    Tervakari, A-M. & Silius, K., 2005

    Research output: Artistic and non-textual formDigital or Visual ProductsScientific

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