Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2007
  2. Insulin-like growth factor binding protein 2 promotes glioma development and progression

    Dunlap, S. M., Celestino, J., Wang, H., Jiang, R., Holland, E., Fueller, G. N. & Zhang, W., 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 28, p. 11736-11741

    Research output: Contribution to journalArticleScientificpeer-review

  3. In vitro expression levels of cell cycle checkpoint proteins are associated with cellular DNA repair capacity in peripheral blood lymphocytes: a multivariate analysis

    Fan, Y. H., Hu, Z. B., Li, C., Wang, L. E., Guo, Z., Qiao, Y., Zhang, L., Zhang, W., Mao, L. & Wei, Q. Y., 2007, In : Journal of Proteome Research. 6, 4, p. 1560-1567

    Research output: Contribution to journalArticleScientificpeer-review

  4. Lääketieteen kirjallisuustietokannat ja tiedonhaku

    Heikkinen, J., Isohanni, M. & Miettunen, J., 2007, In : Suomen Lääkärilehti. 62, 22, p. 2156-2170

    Research output: Contribution to journalReview ArticleScientificpeer-review

  5. Learning and distributed systems development

    Pekkola, S., 2007, ECSCW'07 workshop on The Challenges of Collaborative Work in Global Software Development.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  6. MicroRNA expression profiling in prostate cancer

    Porkka, K. P., Pfeiffer, M. J., Waltering, K. K., Vessella, R. I., Tammela, T. L. J. & Visakorpi, T., 2007, In : Cancer Research. 67, 13, p. 6130-6135

    Research output: Contribution to journalArticleScientificpeer-review

  7. Molecular approaches to resolve diagnostic dilemmas: the case of gastrointestinal stromal tumor and leiomyosarcoma

    Trent, J., Lazar, A. J. F. & Zhang, W., 2007, In : Future Oncology. 3, 6, p. 629-637

    Research output: Contribution to journalArticleScientificpeer-review

  8. Mutation analysis of aryl hydrocarbon receptor interacting protein (AIP) gene in colorectal, breast, and prostate cancers

    Georgitsi, M., Karhu, A., Winqvist, R., Visakorpi, T., Waltering, K., Vahteristo, P., Launonen, V. & Aaltonen, L. A., 2007, In : British Journal of Cancer. 96, 2, p. 352-356

    Research output: Contribution to journalArticleScientificpeer-review

  9. Noisy attractors and ergodic sets in models of gene regulatory networks

    S. Ribeiro, A. & Kauffman, S. A., 2007, In : Journal of Theoretical Biology. 247, 4, p. 743-755

    Research output: Contribution to journalArticleScientificpeer-review

  10. Online interaction with in vitro neuronal networks

    Weihberger, O., Mikkonen, J. E. & Egert, U., 2007, Proceedings of the Seventh Göttingen Meeting of the German Neuroscience Society, 29 March - 1 April 2007, Göttingen, Germany. p. 1 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  11. Published

    Open Source Contributions as Platform Specialization Units

    Hammouda, I. & Mikkonen, T., 2007, Proceedings of OSSPL 2007, Limerick, Ireland, June 2007.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  12. Published

    Polkka-blogit - Opetuskäyttöön TTY:lle räätälöity blogijärjestelmä

    Huhtamäki, J., Häkkinen, P., Kaikuvuo, I., Pohjanen, L., Rasi, E., Saarela, L., Silius, K., Tervakari, A-M. & Zetterberg, S., 2007

    Research output: Artistic and non-textual formSoftwareScientific

  13. Polymorphic TP53BP1 and TP53 gene interactions associated with risk of squamous cell carcinoma of the head and neck

    Chen, K. X., Hu, Z., Wang, L. E., Zhang, W., Sturgis, E. M. & Wei, Q., 2007, In : Clinical Cancer Research. 13, 14, p. 4300-4305

    Research output: Contribution to journalArticleScientificpeer-review

  14. SGN Sim, a stochastic genetic networks simulator

    S. Ribeiro, A. & Lloyd-Price, J., 2007, In : Bioinformatics. 23, 6, p. 777-779

    Research output: Contribution to journalArticleScientificpeer-review

  15. Single nucleotide polymorphisms at the TP53-binding or responsive promoter regions of BAX and BCL2 genes and risk of squamous cell carcinoma of the head and neck

    Chen, K., Hu, Z., Wang, L., Sturgis, E. M., El-Naggar, A. K., Zhang, W. & Wei, Q., 2007, In : Carcinogenesis. 28, 9, p. 2008-2012

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published
  17. Studying genetic regulatory networks at the molecular level: Delayed reaction stochastic models

    Zhu, R., S. Ribeiro, A., Salahub, D. & Kauffman, S. A., 2007, In : Journal of Theoretical Biology. 246, 4, p. 725-745

    Research output: Contribution to journalArticleScientificpeer-review

  18. Studying utility of personal usage-history: A software tool for enabling empirical research

    Wideroos, K. & Pekkola, S., 2007, In : Lecture Notes in Computer Science. 4550, p. 976-984

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Time-interleaved simulcast and redundant intra picture insertion for reducing tune-in delay in DVB-H

    Malamal Vadakital, V. K., Hannuksela, M. M. & Gabbouj, M., 2007, Proceedings of the 16th International Packet Video Workshop, Packet Video 2007, Lausanne, Swizerland, 12-13 November 2007. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  20. Towards industrial service business: Challenges in Designing ICT support for the networks of companies

    Hiippavuori, S., Hänninen, M., Pekkola, S. & Luostarinen, K., 2007, Proceedings of the 9th International Conference on Enterprise Information Systems ICEIS'07, June 12-16 2007.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  21. Published

    User-centered design of a mobile application for sharing life memories

    Olsson, T., Lehtonen, M., Pavel, D. & Väänänen-Vainio-Mattila, K., 2007, MC07 Mobility '07 Proceedings of the 4th international conference on mobile technology, applications, and systems and the 1st international symposium on Computer human interaction in mobile technology, Singapore, September 12 - 14, 2007. p. 524-531

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  22. Published

    Wille Visualisation System

    Haapaniemi, M., Huhtamäki, J., Kortemaa, A., Mannio, M., Nykänen, O. & Salonen, J., 2007

    Research output: Artistic and non-textual formSoftwareScientific

  23. 2006
  24. 3D mesh coding using multiple description scalar quantizers

    Bici, M. O. & Akar, G. B., 2006, Proceedings of the IEEE 14th Signal Processing, Communication and Applications Conference, SIU 2006, Antalya, Turkey, 17-19 April 2006. p. 4 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  25. A general model for gene regulatory networks with stochastic dynamics

    S. Ribeiro, A., Zhu, R. & Kauffman, S. A., 2006, In : WSEAS Transactions on Biology and Biomedicine. 3, 3, p. 261-266

    Research output: Contribution to journalArticleScientificpeer-review

  26. A general modeling strategy for gene regulatory networks with stochastic dynamics

    Ribeiro, A., Zhu, R. & Kauffman, S. A., 2006, In : Journal of Computational Biology. 13, 9, p. 1630-1639

    Research output: Contribution to journalArticleScientificpeer-review

  27. Alternative splicing variants of IRF-1 lacking wxons 7, 8, and 9 in cervical cancer

    Lee, E., Jo, M., Park, J., Zhang, W. & Lee, J. H., 2006, In : Biochemical and Biophysical Research Communications. 347, 4, p. 882-888

    Research output: Contribution to journalArticleScientificpeer-review

  28. An interaction between insulin-like growth factor binding protein 2 and integrin 5 is essential for IGFMP2-induced cell mobility

    Wang, G., Hu, L., Fuller, G. N. & Zhang, W., 2006, In : Journal of Biological Chemistry. 281, 20, p. 14085-14091

    Research output: Contribution to journalArticleScientificpeer-review

  29. A proposed model for small-world structural organization of mission teams and tasks in order to optimize efficiency and minimize costs

    S. Ribeiro, A. & Almeida, M., 2006, In : Acta Astronautica. 59, 8-11, p. 1086-1092

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    A UML-based approach for abstracting interfaces to REST-like services

    Laitkorpi, M., Koskinen, J. & Systä, T., 2006, WCRE '06, Proceedings of the 13th Working Conference on Reverse Engineering, Benevento, Italy, Oct. 2006. p. 134-146

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  31. Chemical genetic identification of the IGF-linked pathway that is mediated by STAT6 and MFP2

    Choi, Y., Shimogawa, H., Murakami, K., Ramdas, L., Zhang, W., Qin, L. & Uesugi, M., 2006, In : Chemistry and Biology. 13, 3, p. 241-249

    Research output: Contribution to journalArticleScientificpeer-review

  32. Different perspectives on learning in information system development

    Pirinen, A. & Pekkola, S., 2006, Proceedings of the 29th Information Systems Research Seminar in Scandinavia, IRIS'29.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  33. Early effects of imatinib mesylate on the expression of insulin-like growth factor binding proetein 3 and psitrom emission tomography in patients with gastrointestinal stromal tumor

    Trent, J. C., Ramdas, L., Dupart, J. J., Hunt, K., Oyedeji, C., Taylor, E. E., Hu, L., Chen, L. L., Benjamin, R. S., Pollock, R. & Zhang, W., 2006, In : Cancer. 107, 8, p. 1898-1908

    Research output: Contribution to journalArticleScientificpeer-review

  34. End users in information systems development: Perceptions, involvement, practice and implications

    Isomäki, H. & Pekkola, S., 2006, Proceedings of Hawaii International Conference on System Sciences, 2006, Hawaii, HICSS-38.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  35. Evaluating end-user support: Validating the use of multiple media in a CSCW application

    Pekkola, S. & Isomäki, H., 2006, Proceedings of the 39th Annual Hawaii International Conference on System Sciences, 4-7 January 2006. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  36. Expression of Bcl-2 in gastrointestinal stromal tumors: correlation with progression-free survival in 81 patients treated with imatinib mesylate

    Steinert, D. M., Oyarzo, M., Wang, X., Choi, H., Thall, P. F., Medeiros, L. J., Raymond, A. K., Benjamin, R. S., Zhang, W. & Trent, J. C., 2006, In : Cancer. 106, 7, p. 1617-1623

    Research output: Contribution to journalArticleScientificpeer-review

  37. Inactivation of IkB contributes to transcriptional activation of spermidine/spermine N(1)-acetyltransferase

    Choi, W., Proctor, L., Xia, Q., Feng, Y., Gerner, E. W., Chiao, P. J., Hamilton, S. R. & Zhang, W., 2006, In : Molecular Carcinogenesis. 45, 9, p. 685-693

    Research output: Contribution to journalArticleScientificpeer-review

  38. Insulin-like growth factor binding protein 2 and 5 are differentially regulated in ovarian cancer of different histologic types

    Wang, H., Rosen, D. G., Fuller, G. N., Zhang, W. & Liu, J., 2006, In : Modern Pathology. 19, 9, p. 1149-1156

    Research output: Contribution to journalArticleScientificpeer-review

  39. Measuring information propagation and retention in Boolean networks and its implications to a model of human organizations

    S. Ribeiro, A., Este, R. A., Lloyd-Price, J. & Kauffman, S. A., 2006, In : WSEAS Transactions on Biology and Biomedicine. 5, 12, p. 2935-2942

    Research output: Contribution to journalArticleScientificpeer-review

  40. Mitochondrial respiration defects in cancer cells cause activation of Akt survival pathway through a redox-mediated mechanism

    Pelicano, H., Xu, R. H., Du, M., Feng, L., Sasaki, R., Carew, J. S., Hu, Y., Ramdas, L., Hu, L., Keating, M. J., Zhang, W., Plunkett, W. & Huang, P., 2006, In : Journal of Cell Biology. 175, 6, p. 913-923

    Research output: Contribution to journalArticleScientificpeer-review

  41. Multiple description scalar quantization based 3D mesh coding

    Bici, M. O. & Akar, G. B., 2006, Proceedings of 2006 IEEE International Conference on Image Processing, ICIP 2006, Atlanta, Georgia, USA, 8-11 October 2006. p. 553-556

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  42. Mutation screening of the androgen receptor promoter and untranslated regions in prostate cancer

    Waltering, K. K., Wallen, M. J., Tammela, T. L. J., Vessella, R. L. & Visakorpi, T., 2006, In : Prostate. 66, 15, p. 1585-1591

    Research output: Contribution to journalArticleScientificpeer-review

  43. Overexpression of IGFBP5, but not IGFBP3, correlates with the histologic grade of human diffuse glioma: a tissue microarray and immunohistochemical study

    Wang, H., Zhang, W. & Fuller, G. N., 2006, In : Technology in Cancer Research and Treatment. 5, 3, p. 195-200

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Performance Implications of Design Pattern Usage in Distributed Applications - Case Studies in J2EE and .NET.

    Rudzki, J. & Systä, T., 2006, ROSATEA '06 Proceedings of the ISSTA 2006 workshop on Role of software architecture for testing and analysis, Portland, Maine, USA, July 17-20, 2006. p. 1-11 11 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  45. Presenting the past: A framework for faciliatating the externalization and articulation of user activities in desktop environment

    Wieroos, K. & Pekkola, S., 2006, Proceedings of the Annual Hawaii International Conference on System Sciences, 4-7 January 2006, Hawaii. p. 10 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  46. Published

    Profile-Based Approach to Support Comprehension of Software Behavior

    Koskinen, J., Kettunen, M. & Systä, T., 2006, Proceedings of the 14th IEEE International Conference on Program Comprehension (ICPC 2006), 14-16 June 2006, Athens, Greece. p. 212-224

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  47. RhG-CSF mobilized and apheresis-collected endothelial progenitor cells: a novel blood cell component for therapeutic vasculogenesis

    Korbling, M., Reuben, J. M., Gao, H., Lee, B. N., harris, D. M., Cogdell, D., Giralt, S. A., Khouri, I. F., Saliba, R. M., Champlin, R. E., Zhang, W. & Estrov, Z., 2006, In : Transfusion. 46, p. 1795-1802

    Research output: Contribution to journalArticleScientificpeer-review

  48. Screening of genetic and expression alterations of SRC1 gene in prostate cancer

    Mäki, H. E., Waltering, K. K., Wallen, M. J., Martikainen, P. M., Tammela, T. L. J., van Weerden, W. M., Vessella, R. L. & Visakorpi, T., 2006, In : Prostate. 66, 13, p. 1391-1398 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Shrew 1 gene, frequently deleted in oligodendrogliomas, functions to inhibit cell adhesion and migration

    McDonald, J. M., Dunlap, S., Cogdell, D., Dumnire, V., Wei, Q., Starzinski-Powitz, A., Sawaya, R., Bruner, J., Fuller, G. N., Aldape, K. & Zhang, W., 2006, In : Cancer Biology and Therapy. 5, 3, p. 300-304

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Three-dimensional monochromatic light field synthesis with a deflectable mirror array device

    Ulusoy, E., Uzunov, V., Onural, L., Ozaktas, H. M. & Gotchev, A., 2006, Proceedigs of SPIE Photon Management II, Strasbourg, France, 20 April 2006. Sheridan, J. T. & Wyrowski, F. (eds.). p. 12 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  51. Towards formalised end-user participation in information systems development process: grdging the gap between participatory desgin and ISD methodologies

    Pekkola, S., Kaarilahti, N. & Pohjola, P., 2006, 2006 Participatory Desgin Conference, PDC 2006, August 1-5, 2006, Trento, Italy. p. 21-30

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  52. Transcriptional activation of the carboxylesterase 2 gene by the p53 pathway

    Choi, W., Cogdell, D., Feng, Y., Hamilton, S. R. & Zhang, W., 2006, In : Cancer Biology and Therapy. 5, 11, p. 1450-1456

    Research output: Contribution to journalArticleScientificpeer-review

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