Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2000
  2. Extracting the dynamics of perceptual switching from 'noisy' behaviour: An application of hidden Markov modelling to pecking data from pigeons

    Otterpohl, J. R., Haynes, J. D., Emmert-Streib, F., Vetter, G. & Pawelzik, K., 2000, In : Journal of Physiology: Paris. 94, 5-6, p. 555-567 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. 2001
  4. Erratum: Extracting the dynamics of perceptual switching from 'noisy' behaviour: An application of hidden Markov modelling to pecking data from pigeons (Journal of Physiology Paris (2000) 94:5-6 (555-567) PII: S0928425700010950)

    Otterpohl, J. R., Haynes, J. D., Emmert-Streib, F., Vetter, G. & Pawelzik, K., 2001, In : Journal of Physiology: Paris. 95, 1-6, p. 497 1 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. A constrained HMM-based approach to the estimation of perceptual switching dynamics in pigeons

    Otterpohl, J. R., Emmert-Streib, F. & Pawelzik, K., Jun 2001, In : Neurocomputing. 38-40, p. 1495-1501 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. 2006
  7. Influence of the neural network topology on the learning dynamics

    Emmert-Streib, F., May 2006, In : Neurocomputing. 69, 10-12, p. 1179-1182 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. 2009
  9. Published

    Neural networks, cell cultures and some older work on data analysis.

    Acimovic, J., 15 Jun 2009.

    Research output: Other conference contributionPaper, poster or abstractScientific

  10. Published

    Computational tools for assessing the properties of 2D neural cell cultures

    Acimovic, J., Teppola, H., Selinummi, J. J. & Linne, M-L., 13 Jul 2009, Eighteenth Annual Computational Neuroscience Meeting: CNS*2009. Johnson, D. (ed.). Berlin: BioMed Central, Vol. 10 (Suppl 1). p. P170 1 p. P170

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  11. 2010
  12. Published

    Computational modeling of growth in cortial cultures using the NETMORPH simulation tool

    Acimovic, J., Mäki-Marttunen, T. & Linne, M-L., 2010, Neuroscience 2010, 40th Annual Meeting, San Diego, USA, 13-17 November 2010. p. 2 p

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  13. 2011
  14. Published

    Computational study of structural changes in neuronal networks during growth: a model of dissociated neocortical cultures

    Acimovic, J., Mäki-Marttunen, T. & Linne, M-L., 2011, Twentieth Annual Computational Neuroscience Meeting: CNS*2011. Fellous, J-M. & Prinz, A. (eds.). Stockholm: BioMed Central, Vol. 12 (Suppl 1). p. P203 1 p. P203. (Annual Computational Neuroscience Meeting CNS; vol. 12).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  15. Published

    Neuromuscular pathology in mice lacking alpha-synuclein

    Pelkonen, A. & Yavich, L., 10 Jan 2011, In : Neuroscience Letters. 487, 3, p. 350-353 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Fault tolerant machine learning for nanoscale cognitive radio

    Pajarinen, J., Peltonen, J. & Uusitalo, M. A., Feb 2011, In : Neurocomputing. 74, 5, p. 753-764 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Cost-effectiveness of decompressive craniectomy in non-traumatic neurological emergencies

    Malmivaara, K., Ohman, J., Kivisaari, R., Hernesniemi, J. & Siironen, J., Mar 2011, In : European Journal of Neurology. 18, 3, p. 402-409 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Effects of structure on spontaneous activity in simulated neuronal networks

    Mäki-Marttunen, T., Acimovic, J., Ruohonen, K. & Linne, M-L., 11 Apr 2011, Proceedings of Mathematical Neuroscience (ICMS 2011), April 11-13, 2011, Edinburgh, Scotland.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  19. Published

    Disease-associated inflammatory biomarker profiles in blood in different subtypes of multiple sclerosis: Prospective clinical and MRI follow-up study

    Hagman, S., Raunio, M., Rossi, M., Dastidar, P. & Elovaara, I., May 2011, In : JOURNAL OF NEUROIMMUNOLOGY. 234, 1-2, p. 141-147 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Mesopic background lights enhance dark-adapted cone ERG flash responses in the intact mouse retina: A possible role for gap junctional decoupling

    Heikkinen, H., Vinberg, F., Nymark, S. & Koskelainen, A., May 2011, In : Journal of Neurophysiology. 105, 5, p. 2309-2318 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Pathway analysis of expression data: Deciphering functional building blocks of complex diseases

    Emmert-Streib, F. & Glazko, G. V., May 2011, In : PLoS Computational Biology. 7, 5, e1002053.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Emergence of global and local structural features during development of neuronal networks

    Acimovic, J., 6 Jun 2011, Proceedings of the Eighth International Workshop on Computational Systems Biology, WCSB 2011, June 6-8, 2011, Zürich, Switzerland . Tampere: TICSP, (TICSP Series ; vol. 57).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  23. Published

    Effects of local structure of neuronal networks on spiking activity in silico

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 18 Jul 2011, Twentieth Annual Computational Neuroscience Meeting: CNS*2011. Fellous, J-M. & Prinz, A. (eds.). Stockholm: BioMed Central, Vol. 12 (Suppl 1). p. P202 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  24. Published

    COX-2 regulates the proliferation of glioma stem like cells

    Sharma, V., Dixit, D., Ghosh, S. & Sen, E., Oct 2011, In : NEUROCHEMISTRY INTERNATIONAL. 59, 5, p. 567-571 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. 2012
  26. Published

    Comparison of eye movement filters used in HCI

    Špakov, O., 2012, Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 281-284 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  27. Published

    Gaze gestures or dwell-based interaction?

    Hyrskykari, A., Istance, H. & Vickers, S., 2012, Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 229-232 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  28. Published

    Simple gaze gestures and the closure of the eyes as an interaction technique

    Heikkilä, H. & Räihä, K. J., 2012, Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 147-154 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  29. Published

    The effect of different text presentation formats on eye movement metrics in reading

    Sharmin, S., Špakov, O. & Räihä, K. J., 2012, In : JOURNAL OF EYE MOVEMENT RESEARCH. 5, 3, 3.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    The validity of using non-representative users in gaze communication research

    Istance, H., Vickers, S. & Hyrskykari, A., 2012, Proceedings - ETRA 2012: Eye Tracking Research and Applications Symposium. p. 233-236 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  31. Published

    Cortical spreading depression in alpha-synuclein knockout mice

    Pelkonen, A. & Yavich, L., Jan 2012, In : SYNAPSE. 66, 1, p. 81-84 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Inhibition of Casein kinase-2 induces p53-dependent cell cycle arrest and sensitizes glioblastoma cells to tumor necrosis factor (TNFα)-induced apoptosis through SIRT1 inhibition

    Dixit, D., Sharma, V., Ghosh, S., Mehta, V. S. & Sen, E., Feb 2012, In : CELL DEATH AND DISEASE. 3, 2, e271.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Significance of graph theoretic measures in predicting neuronal network activity

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 23 Feb 2012, Proceedings of The 9th annual Computational and Systems Neuroscience meeting (COSYNE 2012). Salt Lake City, p. 55-55 1 p. I-15

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  34. Published

    Neuroprotective effect of RO-20-1724-a phosphodiesterase4 inhibitor against intracerebroventricular streptozotocin induced cognitive deficit and oxidative stress in rats

    Sharma, V., Bala, A., Deshmukh, R., Bedi, K. L. & Sharma, P. L., Apr 2012, In : PHARMACOLOGY BIOCHEMISTRY AND BEHAVIOR. 101, 2, p. 239-245 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Melatonin pathway genes are associated with progressive subtypes and disability status in multiple sclerosis among Finnish patients

    Natarajan, R., Einarsdottir, E., Riutta, A., Hagman, S., Raunio, M., Mononen, N., Lehtimäki, T. & Elovaara, I., 15 Sep 2012, In : JOURNAL OF NEUROIMMUNOLOGY. 250, 1-2, p. 106-110 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Extensive white matter changes predict stroke recurrence up to 5 years after a first-ever ischemic stroke

    Melkas, S., Sibolt, G., Oksala, N. K. J., Putaala, J., Pohjasvaara, T., Kaste, M., Karhunen, P. J. & Erkinjuntti, T., Oct 2012, In : CEREBROVASCULAR DISEASES. 34, 3, p. 191-198 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    In silico study on structure and dynamics in bursting neuronal networks

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 13 Oct 2012, Neuroscience 2012; 42nd Annual Meeting, New Orleans, USA, October 14-18, 2012. Society for Neuroscience (SfN), 1 p. 300.26/DDD70

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  38. Published

    Mortality by clinical characteristics in a tertiary care cohort of adult patients with chronic epilepsy

    Nevalainen, O., Auvinen, A., Ansakorpi, H., Artama, M., Raitanen, J. & Isojärvi, J., Dec 2012, In : EPILEPSIA. 53, 12

    Research output: Contribution to journalArticleScientificpeer-review

  39. 2013
  40. Published

    Disconnection between periodic leg movements and cortical arousals in spinal cord injury

    Salminen, A. V., Manconi, M., Rimpilä, V., Luoto, T. M., Koskinen, E., Ferri, R., Öhman, J. & Polo, O., 2013, In : JOURNAL OF CLINICAL SLEEP MEDICINE. 9, 11, p. 1207-1209 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Influence of the experimental design of gene expression studies on the inference of gene regulatory networks: Environmental factors

    Emmert-Streib, F., 2013, In : PeerJ. 2013, 1, e10.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Fluorescent probes as a tool for cell population tracking in spontaneously active neural networks derived from human pluripotent stem cells

    Mäkinen, M., Joki, T., Ylä-Outinen, L., Skottman, H., Narkilahti, S. & Äänismaa, R., Apr 2013, In : Journal of Neuroscience Methods. 215, 1, p. 88-96 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Mismatch negativity abnormality in traumatic brain injury without macroscopic lesions on conventional MRI

    Kaipio, M. L., Cheour, M., Öhman, J., Salonen, O. & Näätänen, R., 29 May 2013, In : NeuroReport. 24, 8, p. 440-444 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    On the effect of network structure and synaptic mechanisms on sustained bursting activity

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 8 Jul 2013, Twenty Second Annual Computational Neuroscience Meeting: CNS*2013. Cymbalyuk, G. & Prinz, A. (eds.). Paris, France: BioMed Central, Vol. Volume 14 Suppl 1. p. P247 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  45. Published

    Transfer learning using a nonparametric sparse topic model

    Faisal, A., Gillberg, J., Leen, G. & Peltonen, J., 18 Jul 2013, In : Neurocomputing. 112, p. 124-137 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Effects of exogenous alpha-synuclein on stimulated dopamine overflow in dorsal striatum

    Pelkonen, A., Kallunki, P. & Yavich, L., 25 Oct 2013, In : Neuroscience Letters. 554, p. 141-145 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Post-stroke depression and depression-executive dysfunction syndrome are associated with recurrence of ischaemic stroke

    Sibolt, G., Curtze, S., Melkas, S., Pohjasvaara, T., Kaste, M., Karhunen, P. J., Oksala, N. K. J., Vataja, R. & Erkinjuntti, T., Dec 2013, In : CEREBROVASCULAR DISEASES. 36, 5-6, p. 336-343 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Learning sparse representations for view-independent human action recognition based on fuzzy distances

    Iosifidis, A., Tefas, A. & Pitas, I., 9 Dec 2013, In : Neurocomputing. 121, p. 344-353 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. 2014
  50. Published

    Comparison of stapedotomy minus prosthesis, circumferential stapes mobilization, and small fenestra stapedotomy for stapes fixation

    Acar, G. O., Kivekäs, I., Hanna, B. M., Huang, L., Gopen, Q. & Poe, D. S., 2014, In : OTOLOGY AND NEUROTOLOGY. 35, 4

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    Haptic feedback to gaze events

    Kangas, J., Rantala, J., Majaranta, P., Isokoski, P. & Raisamo, R., 2014, Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery, p. 11-18 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  52. Published

    Look and lean: Accurate head-assisted eye pointing

    Špakov, O., Isokoski, P. & Majaranta, P., 2014, Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery, p. 35-42 8 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  53. Published

    Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer

    Ju, Y. S. E., Alexandrov, L. B., Gerstung, M., Martincorena, I., Nik-Zainal, S., Ramakrishna, M., Davies, H. R., Papaemmanuil, E., Gundem, G., Shlien, A., Bolli, N., Behjati, S., Tarpey, P. S., Nangalia, J., Massie, C. E., Butler, A. P., Teague, J. W., Vassiliou, G. S., Green, A. R., Du, M. Q., Unnikrishnan, A., Pimanda, J. E., Teh, B. T. E., Munshi, N., Greaves, M., Vyas, P., El-Naggar, A. K., Santarius, T., Collins, V. P., Grundy, R., Taylor, J. A., Hayes, D. N., Malkin, D., Foster, C. S., Warren, A. Y., Whitaker, H. C., Brewer, D., Eeles, R., Cooper, C., Neal, D., Visakorpi, T., Isaacs, W. B., Bova, G. S., Flanagan, A. M., Futreal, P. A., Lynch, A. G., Chinnery, P. F., McDermott, U., Stratton, M. R. & Campbell, P. J., 2014, In : eLIFE. 3

    Research output: Contribution to journalArticleScientificpeer-review

  54. Published

    Real-time hidden gaze point correction

    Špakov, O. & Gizatdinova, Y., 2014, Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery, p. 291-294 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  55. Published

    TraQuMe: A tool for measuring the gaze tracking quality

    Akkil, D., Isokoski, P., Kangas, J., Rantala, J. & Raisamo, R., 2014, Proceedings of the Symposium on Eye Tracking Research and Applications, ETRA 2014. Association for Computing Machinery, p. 327-330 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  56. Published

    Immediate effects of deep brain stimulation of anterior thalamic nuclei on executive functions and emotion-attention interaction in humans

    Hartikainen, K. M., Sun, L., Polvivaara, M., Brause, M., Lehtimäki, K., Haapasalo, J., Möttönen, T., Väyrynen, K., Ogawa, K. H., Öhman, J. & Peltola, J., 28 May 2014, In : JOURNAL OF CLINICAL AND EXPERIMENTAL NEUROPSYCHOLOGY. 36, 5, p. 540-550 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  57. Published

    Autoimmunity-related immunological serum markers and survival in a tertiary care cohort of adult patients with epilepsy

    Nevalainen, O., Auvinen, A., Ansakorpi, H., Raitanen, J. & Isojärvi, J., 1 Nov 2014, In : EPILEPSY RESEARCH. 108, 9, p. 1675-1679 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  58. Published

    Regularized extreme learning machine for multi-view semi-supervised action recognition

    Iosifidis, A., Tefas, A. & Pitas, I., 5 Dec 2014, In : Neurocomputing. 145, p. 250-262 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  59. 2015
  60. Published

    Defining the anterior nucleus of the thalamus (ANT) as a deep brain stimulation target in refractory epilepsy: Delineation using 3 T MRI and intraoperative microelectrode recording

    Möttönen, T., Katisko, J., Haapasalo, J., Tähtinen, T., Kiekara, T., Kähärä, V., Peltola, J., Öhman, J. & Lehtimäki, K., 2015, In : NeuroImage: Clinical. 7, p. 823-829 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  61. Published

    Effects of cytokine activation and oxidative stress on the function of the human embryonic stem cell–derived retinal pigment epithelial cells

    Juuti-Uusitalo, K., Nieminen, M., Treumer, F., Ampuja, M., Kallioniemi, A., Klettner, A. & Skottman, H., 2015, In : Investigative Ophthalmology and Visual Science. 56, 11, p. 6265-6274 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  62. Published

    Extreme learning machine based supervised subspace learning

    Iosifidis, A., 2015, In : Neurocomputing. 167, p. 158–164 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  63. Published

    Patient-specific induced pluripotent stem cell—derived RPE cells: Understanding the pathogenesis of retinopathy in long-chain 3-hydroxyacyl-CoA dehydrogenase deiciency

    Polinati, P. P., Ilmarinen, T., Trokovic, R., Hyotylainen, T., Otonkoski, T., Suomalainen, A., Skottman, H. & Tynitiina, T., 2015, In : Investigative Ophthalmology and Visual Science. 56, 5, p. 3371-3382 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  64. Published

    Analysis of apoptosis-related genes in patients with clinically isolated syndrome and their association with conversion to multiple sclerosis

    Hagman, S., Kolasa, M., Basnyat, P., Helminen, M., Kähönen, M., Dastidar, P., Lehtimäki, T. & Elovaara, I., 15 Mar 2015, In : JOURNAL OF NEUROIMMUNOLOGY. 280, p. 43-48 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  65. Published

    Podocyte apoptosis is prevented by blocking the Toll-like receptor pathway

    Saurus, P., Kuusela, S., Lehtonen, E., Hyvönen, M. E., Ristola, M., Fogarty, C. L., Tienari, J., Lassenius, M. I., Forsblom, C., Lehto, M., Saleem, M. A., Groop, P. H., Holthöfer, H. & Lehtonen, S., 1 May 2015, In : CELL DEATH AND DISEASE. 6, 5, e1752.

    Research output: Contribution to journalArticleScientificpeer-review

  66. Published

    Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge

    Bron, E. E., Smits, M., van der Flier, W. M., Vrenken, H., Barkhof, F., Scheltens, P., Papma, J. M., Steketee, R. M. E., Méndez Orellana, C., Meijboom, R., Pinto, M., Meireles, J. R., Garrett, C., Bastos-Leite, A. J., Abdulkadir, A., Ronneberger, O., Amoroso, N., Bellotti, R., Cárdenas-Peña, D., Álvarez-Meza, A. M., Dolph, C. V., Iftekharuddin, K. M., Eskildsen, S. F., Coupé, P., Fonov, V. S., Franke, K., Gaser, C., Ledig, C., Guerrero, R., Tong, T., Gray, K. R., Moradi, E., Tohka, J., Routier, A., Durrleman, S., Sarica, A., Di Fatta, G., Sensi, F., Chincarini, A., Smith, G. M., Stoyanov, Z. V., Sørensen, L., Nielsen, M., Tangaro, S., Inglese, P., Wachinger, C., Reuter, M., van Swieten, J. C., Niessen, W. J. & Klein, S., 1 May 2015, In : NeuroImage. 111, p. 562-579 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  67. Published

    Experiments of the sonification of the sleep electroencephalogram

    Franco, P. & Värri, A., 11 May 2015, In : Finnish Journal of eHealth and eWelfare. 7, 2-3, p. 65-74 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  68. Published

    The effects of neuron morphology on graph theoretic measures of network connectivity: The analysis of a two-level statistical model

    Acimovic, J., Mäki-Marttunen, T. & Linne, M-L., 10 Jun 2015, In : Frontiers in Neuroanatomy. 9, June, 76.

    Research output: Contribution to journalArticleScientificpeer-review

  69. Published

    Association between soluble L-selectin and anti-JCV antibodies in natalizumab-treated relapsing-remitting MS patients

    Basnyat, P., Hagman, S., Kolasa, M., Koivisto, K., Verkkoniemi-Ahola, A., Airas, L. & Elovaara, I., 1 Jul 2015, In : Multiple Sclerosis and Related Disorders. 4, 4, p. 334-338 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  70. Published

    Evaluation of the different sleep-disordered breathing patterns of the compressed tracheal sound

    Tenhunen, M., Huupponen, E., Hasan, J., Heino, O. & Himanen, S. L., 1 Aug 2015, In : Clinical Neurophysiology. 126, 8, p. 1557-1563 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  71. Published

    X-ray microtomographic confirmation of the reliability of CBCT in identifying the scalar location of cochlear implant electrode after round window insertion

    Zou, J., Hannula, M., Lehto, K., Feng, H., Lähelmä, J., Aula, A. S., Hyttinen, J. & Pyykkö, I., 1 Aug 2015, In : Hearing Research. 326, p. 59-65 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  72. Published

    Distance-based human action recognition using optimized class representations

    Iosifidis, A., Tefas, A. & Pitas, I., 5 Aug 2015, In : Neurocomputing. 161, p. 47-55 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  73. Published

    DropELM: Fast neural network regularization with Dropout and DropConnect

    Iosifidis, A., Tefas, A. & Pitas, I., 25 Aug 2015, In : Neurocomputing. 162, p. 57-66 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  74. Published

    Building new computational models to support health behavior change and maintenance: new opportunities in behavioral research

    Spruijt-Metz, D., Hekler, E., Saranummi, N., Intille, S., Korhonen, I., Nilsen, W., Rivera, D. E., Spring, B., Michie, S., Asch, D. A., Sanna, A., Salcedo, V. T., Kukakfa, R. & Pavel, M., 17 Sep 2015, In : Translational Behavioral Medicine. 5, 3, p. 335-346 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  75. Published

    Elevated levels of soluble CD26 and CD30 in multiple sclerosis

    Basnyat, P., Natarajan, R., Vistbakka, J., Lehtikangas, M., Airas, L., Matinlauri, I., Elovaara, I. & Hagman, S., 1 Nov 2015, In : Clinical and Experimental Neuroimmunology. 6, 4, p. 419-425 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  76. Published

    Human anterior thalamic nuclei are involved in emotion-attention interaction

    Sun, L., Peräkylä, J., Polvivaara, M., Öhman, J., Peltola, J., Lehtimäki, K., Huhtala, H. & Hartikainen, K. M., 1 Nov 2015, In : NEUROPSYCHOLOGIA. 78, p. 88-94 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  77. Published

    Assessment of respiratory effort during sleep with noninvasive techniques

    Tenhunen, M., Hasan, J. & Himanen, S. L., 1 Dec 2015, In : Sleep Medicine Reviews. 24, p. 103-104 2 p.

    Research output: Contribution to journalArticleScientific

  78. Published

    Eustachian tube mucosal inflammation scale validation based on digital video images

    Kivekäs, I., Pöyhönen, L., Aarnisalo, A., Rautiainen, M. & Poe, D., 1 Dec 2015, In : OTOLOGY AND NEUROTOLOGY. 36, 10, p. 1748-1752 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  79. Published

    Severe cerebral white matter lesions in ischemic stroke patients are associated with less time spent at home and early institutionalization

    Sibolt, G., Curtze, S., Melkas, S., Pohjasvaara, T., Kaste, M., Karhunen, P. J., Oksala, N. K. J. & Erkinjuntti, T., 1 Dec 2015, In : INTERNATIONAL JOURNAL OF STROKE. 10, 8, p. 1192-1196 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  80. Published

    Whole-cell morphological properties of neurons constrain the nonrandom features of network connectivity

    Acimovic, J., Mäki-Marttunen, T. M. & Linne, M-L., 4 Dec 2015, 24th Annual Computational Neuroscience Meeting: CNS*2015. Cymbalyuk, G. & Burkitt, A. (eds.). Prague: BioMed Central, Vol. 16 (Suppl 1). p. P:O7 1 p. O7

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  81. 2016
  82. Published

    Comparison of Feature Selection Techniques in Machine Learning for Anatomical Brain MRI in Dementia

    Tohka, J., Moradi, E., Huttunen, H., Alzheimer’s Disease Neuroimaging Initiative & Alzheimer’s Disease Neuroimaging Initiative 2, 2016, In : Neuroinformatics. 14, 3, p. 279-296 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  83. Published

    How Many Is Enough? Effect of Sample Size in Inter-Subject Correlation Analysis of fMRI

    Pajula, J. & Tohka, J., 2016, In : Computational Intelligence and Neuroscience. 2016, 2094601.

    Research output: Contribution to journalArticleScientificpeer-review

  84. Published

    Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol

    Teppola, H., Sarkanen, J. R., Jalonen, T. O. & Linne, M-L., 2016, In : Neurochemical Research. 41, 4, p. 731-747

    Research output: Contribution to journalArticleScientificpeer-review

  85. Published

    One-Class Classification based on Extreme Learning and Geometric Class Information

    Iosifidis, A., Mygdalis, V., Tefas, A. & Pitas, I., 2016, In : Neural Processing Letters. p. 1-16 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  86. Published

    Effect of rhodopsin phosphorylation on dark adaptation in mouse rods

    Berry, J., Frederiksen, R., Yao, Y., Nymark, S., Chen, J. & Cornwall, C., 29 Jun 2016, In : Journal of Neuroscience. 36, 26, p. 6973-6987 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  87. Published

    Automatic objective thresholding to detect neuronal action potentials

    Tanskanen, J. M. A., Kapucu, F. E., Välkki, I. & Hyttinen, J. A. K., 29 Aug 2016, Proceedings of 2016 24th European Signal Processing Conference (EUSIPCO). p. 662-666 5 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  88. Published

    The relationship between recognition memory for emotion-laden words and white matter microstructure in normal older individuals

    Saarela, C., Karrasch, M., Ilvesmäki, T., Parkkola, R., Rinne, J. O. & Laine, M., 1 Nov 2016, In : NeuroReport. 27, 18, p. 1345-1349 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  89. 2017
  90. Published

    Advanced boundary electrode modeling for tES and parallel tES/EEG

    Pursiainen, S., Agsten, B., Wagner, S. & Wolters, C. H., 2017, In : IEEE Transactions on Neural Systems and Rehabilitation Engineering. 26, 1, p. 37-44

    Research output: Contribution to journalArticleScientificpeer-review

  91. Published

    Predicting symptom severity in autism spectrum disorder based on cortical thickness measures in agglomerative data

    Moradi, E., Khundrakpam, B., Lewis, J. D., Evans, A. C. & Tohka, J., 2017, In : NeuroImage. 144, A, p. 128–141

    Research output: Contribution to journalArticleScientificpeer-review

  92. Published

    Spinal cord injury induces widespread chronic changes in cerebral white matter

    Ilvesmäki, T., Koskinen, E., Brander, A., Luoto, T., Öhman, J. & Eskola, H., 2017, In : Human Brain Mapping. 38, 7, p. 3637-3647

    Research output: Contribution to journalArticleScientificpeer-review

  93. Published

    Cell culture chamber with gas supply for prolonged recording of human neuronal cells on microelectrode array

    Kreutzer, J., Ylä-Outinen, L., Mäki, A., Ristola, M., Narkilahti, S. & Kallio, P., 15 Mar 2017, In : Journal of Neuroscience Methods. 280, p. 27-35 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  94. Published

    Functional brain segmentation using inter-subject correlation in fMRI

    Kauppi, J-P., Pajula, J., Niemi, J., Hari, R. & Tohka, J., 1 May 2017, In : Human Brain Mapping. 38, 5, p. 2643-2665 23 p.

    Research output: Contribution to journalArticleScientificpeer-review

  95. Published

    Network-wide adaptive burst detection depicts neuronal activity with improved accuracy

    Välkki, I. A., Lenk, K., Mikkonen, J. E., Kapucu, F. E. & Hyttinen, J. A. K., 31 May 2017, In : Frontiers in Computational Neuroscience. 11, 40.

    Research output: Contribution to journalArticleScientificpeer-review

  96. Published

    CNN-based edge filtering for object proposals

    Waris, M. A., Iosifidis, A. & Gabbouj, M., 2 Jun 2017, In : Neurocomputing. 266, p. 631-640

    Research output: Contribution to journalArticleScientificpeer-review

  97. Published

    Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles

    Mokkila, S., Postila, P. A., Rissanen, S., Juhola, H., Vattulainen, I. & Róg, T., 21 Jun 2017, In : ACS Chemical Neuroscience. 8, 6, p. 1242-1250 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  98. Published

    Atomistic fingerprint of hyaluronan–CD44 binding

    Vuorio, J., Vattulainen, I. & Martinez-Seara, H., 1 Jul 2017, In : PLoS Computational Biology. 13, 7, e1005663.

    Research output: Contribution to journalArticleScientificpeer-review

  99. Published

    Measures of spike train synchrony for data with multiple time scales

    Satuvuori, E., Mulansky, M., Bozanic, N., Malvestio, I., Zeldenrust, F., Lenk, K. & Kreuz, T., 1 Aug 2017, In : Journal of Neuroscience Methods. 287, p. 25-38 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  100. Published

    Inhibition of Aβ Amyloid Growth and Toxicity by Silybins: The Crucial Role of Stereochemistry

    Sciacca, M. F. M., Romanucci, V., Zarrelli, A., Monaco, I., Lolicato, F., Spinella, N., Galati, C., Grasso, G., D'Urso, L., Romeo, M., Diomede, L., Salmona, M., Bongiorno, C., Di Fabio, G., La Rosa, C. & Milardi, D., 16 Aug 2017, In : ACS Chemical Neuroscience. 8, 8, p. 1767-1778 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  101. Published

    Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin

    Enkavi, G., Mikkolainen, H., Güngör, B., Ikonen, E. & Vattulainen, I., 1 Oct 2017, In : PLoS Computational Biology. 13, 10, e1005831.

    Research output: Contribution to journalArticleScientificpeer-review

  102. Published

    MetrIntMeas a novel metric for measuring the intelligence of a swarm of cooperating agents

    Iantovics, L. B., Emmert-Streib, F. & Arik, S., 1 Oct 2017, In : Cognitive Systems Research. 45, p. 17-29 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  103. 2018
  104. Published

    A Primal Neural Network for Online Equality-Constrained Quadratic Programming

    Chen, K. & Zhang, Z., 2018, In : Cognitive Computation. 10, 2, p. 381–388 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  105. Published

    From in silico astrocyte cell models to neuron-astrocyte network models: A review

    Oschmann, F., Berry, H., Obermayer, K. & Lenk, K., 2018, In : BRAIN RESEARCH BULLETIN. 136, p. 76-84

    Research output: Contribution to journalReview ArticleScientificpeer-review

  106. Published

    Nonlinear recurrent neural networks for finite-time solution of general time-varying linear matrix equations

    Xiao, L., Liao, B., Li, S. & Chen, K., Feb 2018, In : Neural Networks. 98, p. 102-113 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  107. Published

    Epileptiform and periodic EEG activities induced by rapid sevoflurane anaesthesia induction

    Sonkajärvi, E., Rytky, S., Alahuhta, S., Suominen, K., Kumpulainen, T., Ohtonen, P., Karvonen, E. & Jäntti, V., 1 Mar 2018, In : Clinical Neurophysiology. 129, 3, p. 638-645 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  108. Published

    Negatively Charged Gangliosides Promote Membrane Association of Amphipathic Neurotransmitters

    Juhola, H., Postila, P. A., Rissanen, S., Lolicato, F., Vattulainen, I. & Róg, T., 1 Aug 2018, In : Neuroscience. 384, p. 214-223 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  109. Published

    Improving efficiency in convolutional neural networks with multilinear filters

    Tran, D. T., Iosifidis, A. & Gabbouj, M., 1 Sep 2018, In : Neural Networks. 105, p. 328-339 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  110. Published

    Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling

    Pantsar, T., Rissanen, S., Dauch, D., Laitinen, T., Vattulainen, I. & Poso, A., 10 Sep 2018, In : PLoS Computational Biology. 14, 9, e1006458.

    Research output: Contribution to journalArticleScientificpeer-review

  111. Published

    Data-driven study of synchronous popula on ac vity in generic spiking neuronal networks: How much do we capture using the minimal model for the considered phenomena?

    Acimovic, J., Teppola, H., Mäki-Marttunen, T. M. & Linne, M-L., 20 Sep 2018.

    Research output: Other conference contributionPaper, poster or abstractScientific

  112. Published

    Improvement of computational efficiency of a biochemical plasticity model

    Lehtimäki, M., Paunonen, L. & Linne, M-L., 29 Sep 2018, In : BMC Neuroscience. 19, Suppl 2, p. 66-66 P130.

    Research output: Contribution to journalMeeting AbstractScientificpeer-review

  113. Published

    Data-driven study of synchronous population activity in generic spiking neuronal networks: How much do we capture using the minimal model for the considered phenomena?

    Acimovic, J., Teppola, H., Mäki-Marttunen, T. M. & Linne, M-L., 29 Oct 2018, In : BMC Neuroscience. 19, Suppl 2, p. 68-69 1 p.

    Research output: Contribution to journalMeeting AbstractScientificpeer-review

  114. Published

    Human-robot interactive learning architecture using ontologies and symbol manipulation

    Angleraud, A., Houbre, Q., Kyrki, V. & Pieters, R., 6 Nov 2018, RO-MAN 2018 - 27th IEEE International Symposium on Robot and Human Interactive Communication: August 27-31, 2018, Nanjing, China.. IEEE, p. 384-389 6 p. (IEEE RO-MAN).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  115. Published

    Cognitive load and metacognitive confidence extraction from pupillary response

    Gavas, R. D., Tripathy, S. R., Chatterjee, D. & Sinha, A., 1 Dec 2018, In : Cognitive Systems Research. 52, p. 325-334 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  116. 2019
  117. Published

    Advances in Human Stem Cell-Derived Neuronal Cell Culturing and Analysis

    Ylä-Outinen, L., Tanskanen, J. M. A., Kapucu, F. E., Hyysalo, A., Hyttinen, J. A. K. & Narkilahti, S., 2019, In Vitro Neuronal Networks: From Culturing Methods to Neuro-Technological Applications. Springer New York LLC, p. 299-329 31 p. (Advances in Neurobiology; vol. 22).

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  118. Published

    A realistic, accurate and fast source modeling approach for the EEG forward problem

    Miinalainen, T., Rezaei, A., Us, D., Nüßing, A., Engwer, C., Wolters, C. H. & Pursiainen, S., 2019, In : NeuroImage. 184, 1, p. 56-67 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  119. Published

    Astrocyte lineage cells are essential for functional neuronal differentiation and synapse maturation in human iPSC-derived neural networks

    Klapper, S. D., Garg, P., Dagar, S., Lenk, K., Gottmann, K. & Nieweg, K., 2019, In : Glia. 67, 10, p. 1893-1909 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  120. Published

    Overview of Sources and Characteristics of Nanoparticles in Urban Traffic-Influenced Areas

    Rönkkö, T. & Timonen, H., 2019, In : Journal of Alzheimer's Disease. 72, 1, p. 15-28 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  121. Published

    Teaching semantics and skills for human-robot collaboration

    Angleraud, A., Houbre, Q. & Pieters, R., 2019, In : Paladyn. 10, 1, p. 318-329 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  122. E-pub ahead of print

    Zeffiro User Interface for Electromagnetic Brain Imaging: a GPU Accelerated FEM Tool for Forward and Inverse Computations in Matlab

    He, Q., Rezaei, A. & Pursiainen, S., 2019, In : Neuroinformatics. 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  123. Published

    Diffusion tensor imaging and disability progression in multiple sclerosis: A 4-year follow-up study

    Kolasa, M., Hakulinen, U., Brander, A., Hagman, S., Dastidar, P., Elovaara, I. & Sumelahti, M-L., Jan 2019, In : Brain and Behavior. 9, 1, e01194.

    Research output: Contribution to journalArticleScientificpeer-review

  124. Published

    Improved EEG source localization with Bayesian uncertainty modelling of unknown skull conductivity

    Rimpiläinen, V., Koulouri, A., Lucka, F., Kaipio, J. P. & Wolters, C. H., 1 Mar 2019, In : NeuroImage. 188, p. 252-260 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  125. Published

    Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions

    Javanainen, M., Enkavi, G., Guixà-Gonzaléz, R., Kulig, W., Martinez-Seara, H., Levental, I. & Vattulainen, I., 1 May 2019, In : PLoS Computational Biology. 15, 5, e1007033.

    Research output: Contribution to journalArticleScientificpeer-review

  126. Published

    Viability of Mouse Retinal Explant Cultures Assessed by Preservation of Functionality and Morphology

    Alarautalahti, V., Ragauskas, S., Hakkarainen, J. J., Uusitalo-Järvinen, H., Uusitalo, H., Hyttinen, J., Kalesnykas, G. & Nymark, S., 1 May 2019, In : Investigative ophthalmology & visual science. 60, 6, p. 1914-1927 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  127. Published

    Unique Features of Network Bursts Emerge From the Complex Interplay of Excitatory and Inhibitory Receptors in Rat Neocortical Networks

    Teppola, H., Aćimović, J. & Linne, M. L., 6 Sep 2019, In : FRONTIERS IN CELLULAR NEUROSCIENCE. 13, 377.

    Research output: Contribution to journalArticleScientificpeer-review

  128. 2020
  129. Published

    Membrane-Dependent Binding and Entry Mechanism of Dopamine into Its Receptor

    Lolicato, F., Juhola, H., Zak, A., Postila, P. A., Saukko, A., Rissanen, S., Enkavi, G., Vattulainen, I., Kepczynski, M. & Róg, T., 2020, In : ACS Chemical Neuroscience. 11, 13, p. 1914–1924 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  130. Published

    Randomized Multiresolution Scanning in Focal and Fast E/MEG Sensing of Brain Activity with a Variable Depth

    Rezaei, A., Koulouri, A. & Pursiainen, S., 2020, In : Brain Topography. 33, 2, p. 161-175 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  131. Published

    Tidal breathing flow profiles during sleep in wheezing children measured by impedance pneumography

    Gracia-Tabuenca, J., Seppä, V-P., Jauhiainen, M., Paassilta, M., Viik, J. & Karjalainen, J., 2020, In : Respiratory Physiology and Neurobiology. 271, 103312.

    Research output: Contribution to journalArticleScientificpeer-review

  132. Published

    A Computational Model of Interactions Between Neuronal and Astrocytic Networks: The Role of Astrocytes in the Stability of the Neuronal Firing Rate

    Lenk, K., Satuvuori, E., Lallouette, J., Ladrón-de-Guevara, A., Berry, H. & Hyttinen, J. A. K., 22 Jan 2020, In : Frontiers in Computational Neuroscience. 13, 19 p., 92.

    Research output: Contribution to journalArticleScientificpeer-review

  133. Published

    Deep audio-visual saliency: Baseline model and data

    Tavakoli, H. R., Borji, A., Kannala, J. & Rahtu, E., 6 Feb 2020, Proceedings ETRA 2020 Short Papers - ACM Symposium on Eye Tracking Research and Applications, ETRA 2020. Spencer, S. N. (ed.). ACM, 3

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  134. Published

    Automatic assessment of the myoclonus severity from videos recorded according to standardized Unified Myoclonus Rating Scale protocol and using human pose and body movement analysis

    Hyppönen, J., Hakala, A., Annala, K., Zhang, H., Peltola, J., Mervaala, E. & Kälviäinen, R., 1 Mar 2020, In : Seizure. 76, p. 72-78 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  135. Published

    Salivary cortisol reactivity to psychological stressors in infancy: A meta-analysis

    Puhakka, I. J. A. & Peltola, M. J., 1 May 2020, In : PSYCHONEUROENDOCRINOLOGY. 115, 104603.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  136. Published

    Assessment of PIV performance in validating CFD models from nasal cavity CBCT scans

    Ormiskangas, J., Valtonen, O., Kivekäs, I., Dean, M., Poe, D., Järnstedt, J., Lekkala, J., Harju, T., Saarenrinne, P. & Rautiainen, M., 1 Nov 2020, In : Respiratory Physiology and Neurobiology. 282, 9 p., 103508.

    Research output: Contribution to journalArticleScientificpeer-review

  137. Published

    Neurofunctional plasticity in fraction learning: An fMRI training study

    Wortha, S. M., Bloechle, J., Ninaus, M., Kiili, K., Lindstedt, A., Bahnmueller, J., Moeller, K. & Klein, E., 1 Dec 2020, In : Trends in Neuroscience and Education. 21, 15 p., 100141.

    Research output: Contribution to journalArticleScientificpeer-review