Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2020
  2. Published

    Combining deep learning with token selection for patient phenotyping from electronic health records

    Yang, Z., Dehmer, M., Yli-Harja, O. & Emmert-Streib, F., 1 Dec 2020, In : Scientific Reports. 10, 1, 1432.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Mechanism of homodimeric cytokine receptor activation and dysregulation by oncogenic mutations

    Wilmes, S., Hafer, M., Vuorio, J., Tucker, J. A., Winkelmann, H., Löchte, S., Stanly, T. A., Pulgar Prieto, K. D., Poojari, C., Sharma, V., Richter, C. P., Kurre, R., Hubbard, S. R., Christopher Garcia, K., Moraga, I., Vattulainen, I., Hitchcock, I. S. & Piehler, J., 7 Feb 2020, In : Science. 367, 6478, p. 643-652 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    Three-Dimensional Printing of the Nasal Cavities for Clinical Experiments

    Valtonen, O., Ormiskangas, J., Kivekäs, I., Rantanen, V., Dean, M., Poe, D., Järnstedt, J., Lekkala, J., Saarenrinne, P. & Rautiainen, M., 16 Jan 2020, In : Scientific Reports. 10, 1, 1 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Automatic Posture and Movement Tracking of Infants with Wearable Movement Sensors

    Airaksinen, M., Räsänen, O., Ilén, E., Häyrinen, T., Kivi, A., Marchi, V., Gallen, A., Blom, S., Varhe, A., Kaartinen, N., Haataja, L. & Vanhatalo, S., 13 Jan 2020, In : Scientific Reports. 10, 1, 1 p.

    Research output: Contribution to journalArticleScientificpeer-review

  6. 2019
  7. Published

    Changes in hemodynamics associated with metabolic syndrome are more pronounced in women than in men

    Kangas, P., Tikkakoski, A., Kettunen, J., Eräranta, A., Huhtala, H., Kähönen, M., Sipilä, K., Mustonen, J. & Pörsti, I., 5 Dec 2019, In : Scientific Reports. 9, 1, 11 p., 18377.

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Automatic classification of IgA endomysial antibody test for celiac disease: a new method deploying machine learning

    Caetano dos Santos, F. L., Michalek, I. M., Laurila, K., Kaukinen, K., Hyttinen, J. & Lindfors, K., 1 Dec 2019, In : Scientific Reports. 9, 1, 9217.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Genetic similarity of biological samples to counter bio-hacking of DNA-sequencing functionality

    Islam, M. S., Ivanov, S., Robson, E., Dooley-Cullinane, T., Coffey, L., Doolin, K. & Balasubramaniam, S., 1 Dec 2019, In : Scientific Reports. 9, 1, 8684.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Multimodal Machine Learning-based Knee Osteoarthritis Progression Prediction from Plain Radiographs and Clinical Data

    Tiulpin, A., Klein, S., Bierma-Zeinstra, S. M. A., Thevenot, J., Rahtu, E., Meurs, J. V., Oei, E. H. G. & Saarakkala, S., 1 Dec 2019, In : Scientific Reports. 9, 1, 20038.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Aerosol gas exchange system (AGES) for nanoparticle sampling at elevated temperatures: Modeling and experimental characterization

    Bainschab, M., Martikainen, S., Keskinen, J., Bergmann, A. & Karjalainen, P., 20 Nov 2019, In : Scientific Reports. 9, 1, 12 p., 17149.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Highly ductile amorphous oxide at room temperature and high strain rate

    Frankberg, E. J., Kalikka, J., Ferré, F. G., Joly-Pottuz, L., Salminen, T., Hintikka, J., Hokka, M., Koneti, S., Douillard, T., Le Saint, B., Kreiml, P., Cordill, M. J., Epicier, T., Stauffer, D., Vanazzi, M., Roiban, L., Akola, J., Fonzo, F. D., Levänen, E. & Masenelli-Varlot, K., 15 Nov 2019, In : Science. 366, 6467, p. 864-869 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Automatization and stress analysis data of CoCr laser weld fatigue tests

    Kanerva, M., Besharat, Z., Pärnänen, T., Jokinen, J., Honkanen, M., Sarlin, E., Göthelid, M. & Schlenzka, D., 1 Oct 2019, In : Data in Brief. 26, 104374.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    DroneRF dataset: A dataset of drones for RF-based detection, classification and identification

    Allahham, MHD. S., Al-Sa'd, M. F., Al-Ali, A., Mohamed, A., Khattab, T. & Erbad, A., 1 Oct 2019, In : Data in Brief. 26, 104313.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Non-toxic printed supercapacitors operating in sub-zero conditions

    Railanmaa, A., Lehtimäki, S., Keskinen, J. & Lupo, D., 1 Oct 2019, In : Scientific Reports. 9, 1, 14059.

    Research output: Contribution to journalArticleScientificpeer-review

  16. Published

    Real-time characterization of spectral instabilities in a mode-locked fibre laser exhibiting soliton-similariton dynamics

    Lapre, C., Billet, C., Meng, F., Ryczkowski, P., Sylvestre, T., Finot, C., Genty, G. & Dudley, J. M., 27 Sep 2019, In : Scientific Reports. 9, 1

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Gaussian Light Model in Brightfield Optical Projection Tomography

    Koskela, O., Montonen, T., Belay, B., Figueiras, E., Pursiainen, S. & Hyttinen, J., 26 Sep 2019, In : Scientific Reports. 9, 1

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Scaling and correlation properties of RR and QT intervals at the cellular level

    Kim, J., Shah, D., Potapov, I., Latukka, J., Aalto-Setälä, K. & Räsänen, E., 2019, In : Scientific Reports. 9, 1, 3651.

    Research output: Contribution to journalArticleScientificpeer-review

  19. 2018
  20. Published

    Multicomponent new particle formation from sulfuric acid, ammonia, and biogenic vapors

    Lehtipalo, K., Yan, C., Dada, L., Bianchi, F., Xiao, M., Wagner, R., Stolzenburg, D., Ahonen, L. R., Amorim, A., Baccarini, A., Bauer, P. S., Baumgartner, B., Bergen, A., Bernhammer, A. K., Breitenlechner, M., Brilke, S., Buchholz, A., Mazon, S. B., Chen, D., Chen, X., Dias, A., Dommen, J., Draper, D. C., Duplissy, J., Ehn, M., Finkenzeller, H., Fischer, L., Frege, C., Fuchs, C., Garmash, O., Gordon, H., Hakala, J., He, X., Heikkinen, L., Heinritzi, M., Helm, J. C., Hofbauer, V., Hoyle, C. R., Jokinen, T., Kangasluoma, J., Kerminen, V. M., Kim, C., Kirkby, J., Kontkanen, J., Kürten, A., Lawler, M. J., Mai, H., Mathot, S., Nieminen, T. & Virtanen, A., 12 Dec 2018, In : Science Advances. 4, 12, eaau5363.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    An Optical Method for the In-Vivo Characterization of the Biomechanical Response of the Right Ventricle

    Soltani, A., Lahti, J., Järvelä, K., Curtze, S., Laurikka, J., Hokka, M. & Kuokkala, V. T., 1 Dec 2018, In : Scientific Reports. 8, 1, 6831.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Automatic knee osteoarthritis diagnosis from plain radiographs: A deep learning-based approach

    Tiulpin, A., Thevenot, J., Rahtu, E., Lehenkari, P. & Saarakkala, S., 1 Dec 2018, In : Scientific Reports. 8, 1, 1727.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    Glucosylceramide modifies the LPS-induced inflammatory response in macrophages and the orientation of the LPS/TLR4 complex in silico

    Mobarak, E., Håversen, L., Manna, M., Rutberg, M., Levin, M., Perkins, R., Rog, T., Vattulainen, I. & Borén, J., 1 Dec 2018, In : Scientific Reports. 8, 1, 13600.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Highly-Sensitive Refractive Index Sensing by Near-infrared Metatronic Nanocircuits

    Rashed, A. R., Gudulluoglu, B., Yun, H. W., Habib, M., Boyaci, I. H., Hong, S. H., Ozbay, E. & Caglayan, H., 1 Dec 2018, In : Scientific Reports. 8, 1, 11457.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Information transfer in QT-RR dynamics: Application to QT-correction

    Potapov, I., Latukka, J., Kim, J., Luukko, P., Aalto-Setälä, K. & Räsänen, E., 1 Dec 2018, In : Scientific Reports. 8, 1, 9 p., 14992.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    In vitro Evaluation of Porous borosilicate, borophosphate and phosphate Bioactive Glasses Scaffolds fabricated using Foaming Agent for Bone Regeneration

    Erasmus, E. P., Sule, R., Johnson, O. T., Massera, J. & Sigalas, I., 1 Dec 2018, In : Scientific Reports. 8, 1, 3699.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Multilayer Aggregation with Statistical Validation: Application to Investor Networks

    Baltakys, K., Kanniainen, J. & Emmert-Streib, F., 1 Dec 2018, In : Scientific Reports. 8, 1, 8198.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Added value of autoregulation and multi-step kinetics of transcription initiation

    Prajapat, M. K. & Ribeiro, A. S., 1 Nov 2018, In : Royal Society Open Science. 5, 11, 181170.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Redox-coupled quinone dynamics in the respiratory complex I

    Warnau, J., Sharma, V., Gamiz-Hernandez, A. P., Luca, A. D., Haapanen, O., Vattulainen, I., Wikström, M., Hummer, G. & Kaila, V. R. I., 4 Sep 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 36, p. E8413-E8420

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Optimized dispersion quality of aqueous carbon nanotube colloids as a function of sonochemical yield and surfactant/CNT ratio

    Keinänen, P., Siljander, S., Koivula, M., Sethi, J., Sarlin, E., Vuorinen, J. & Kanerva, M., 1 Sep 2018, In : Heliyon. 4, 9, 15 p., e00787.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Porous poly-L-lactide-co-1-caprolactone scaffold: A novel biomaterial for vaginal tissue engineering

    Sartoneva, R., Kuismanen, K., Juntunen, M., Karjalainen, S., Hannula, M., Kyllönen, L., Hyttinen, J., Huhtala, H., Paakinaho, K. & Miettinen, S., 1 Aug 2018, In : Royal Society Open Science. 5, 8, 180811.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Comparison of electron injection and recombination on TiO2 nanoparticles and ZnO nanorods photosensitized by phthalocyanine

    Virkki, K., Tervola, E., Ince, M., Torres, T. & Tkachenko, N. V., 11 Jul 2018, In : Royal Society Open Science. 5, 7, 180323.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Ricci-flow based conformal mapping of the proximal femur to identify exercise loading effects

    Narra, N., Abe, S., Dimitrov, V., Nikander, R., Kouhia, R., Sievänen, H. & Hyttinen, J., 2018, In : Scientific Reports. 8, 1, 4823.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Sub-parts-per-trillion level sensitivity in trace gas detection by cantilever-enhanced photo-acoustic spectroscopy

    Tomberg, T., Vainio, M., Hieta, T. & Halonen, L., 2018, In : Scientific Reports. 8, 1, 1848.

    Research output: Contribution to journalArticleScientificpeer-review

  35. 2017
  36. Published

    Speeding up crystallization

    Akola, J. & Jones, R. O., 15 Dec 2017, In : Science. 358, 6369, p. 1386 1 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  37. Published

    Chromatin organization regulates viral egress dynamics

    Aho, V., Myllys, M., Ruokolainen, V., Hakanen, S., Mäntylä, E., Virtanen, J., Hukkanen, V., Kühn, T., Timonen, J., Mattila, K., Larabell, C. A. & Vihinen-Ranta, M., 1 Dec 2017, In : Scientific Reports. 7, 1, 3692.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Curved optical solitons subject to transverse acceleration in reorientational soft matter

    Laudyn, U. A., Kwaśny, M., Sala, F. A., Karpierz, M. A., Smyth, N. F. & Assanto, G., 1 Dec 2017, In : Scientific Reports. 7, 1, 12385.

    Research output: Contribution to journalArticleScientificpeer-review

  39. Published

    Effects of Sintering Temperature on Crystallization and Fabrication of Porous Bioactive Glass Scaffolds for Bone Regeneration

    Erasmus, E. P., Johnson, O. T., Sigalas, I. & Massera, J., 1 Dec 2017, In : Scientific Reports. 7, 1, 6046.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Molecular mechanisms of Charcot-Marie-Tooth neuropathy linked to mutations in human myelin protein P2

    Ruskamo, S., Nieminen, T., Kristiansen, C. K., Vatne, G. H., Baumann, A., Hallin, E. I., Raasakka, A., Joensuu, P., Bergmann, U., Vattulainen, I. & Kursula, P., 1 Dec 2017, In : Scientific Reports. 7, 1, 6510.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Personalized Monitoring and Advance Warning System for Cardiac Arrhythmias

    Kiranyaz, S., Ince, T. & Gabbouj, M., 1 Dec 2017, In : Scientific Reports. 7, 1, 9270.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Rate-limiting steps in transcription dictate sensitivity to variability in cellular components

    Mäkelä, J., Kandavalli, V. & Ribeiro, A. S., 1 Dec 2017, In : Scientific Reports. 7, 1, 10588.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Sensitivity enhancement of flexible gas sensors via conversion of inkjet-printed silver electrodes into porous gold counterparts

    Fang, Y., Akbari, M., Sydänheimo, L., Ukkonen, L. & Tentzeris, M. M., 1 Dec 2017, In : Scientific Reports. 7, 1, 8988.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Mechanistic principles underlying regulation of the actin cytoskeleton by phosphoinositides

    Senju, Y., Kalimeri, M., Koskela, E. V., Somerharju, P., Zhao, H., Vattulainen, I. & Lappalainen, P., 24 Oct 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 43, p. E8977-E8986

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Traffic is a major source of atmospheric nanocluster aerosol

    Rönkkö, T., Kuuluvainen, H., Karjalainen, P., Keskinen, J., Hillamo, R., Niemi, J. V., Pirjola, L., Timonen, H. J., Saarikoski, S., Saukko, E., Järvinen, A., Silvennoinen, H., Rostedt, A., Olin, M., Yli-Ojanperä, J., Nousiainen, P., Kousa, A. & Dal Maso, M., 18 Jul 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 29, p. 7549-7554 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Väitöstilaisuus yliopiston imagonluojana

    Katko, T. S., May 2017, In : Tiedepolitiikka. 42, 1, p. 63-64 2 p.

    Research output: Contribution to journalComment/debateScientific

  47. Published

    Analysis of spatial heterogeneity in normal epithelium and preneoplastic alterations in mouse prostate tumor models

    Valkonen, M., Ruusuvuori, P., Kartasalo, K., Nykter, M., Visakorpi, T. & Latonen, L., 20 Mar 2017, In : Scientific Reports. 7, 44831.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    Infiltrated bunch of solitons in Bi-doped frequency-shifted feedback fibre laser operated at 1450 nm

    Rissanen, J., Korobko, D. A., Zolotovsky, I. O., Melkumov, M., Khopin, V. F. & Gumenyuk, R., 10 Mar 2017, In : Scientific Reports. 7, 44194.

    Research output: Contribution to journalArticleScientificpeer-review

  49. 2016
  50. Published

    Surface-Enhanced Impulsive Coherent Vibrational Spectroscopy

    Du, J., Harra, J., Virkki, M., Mäkelä, J. M., Leng, Y., Kauranen, M. & Kobayashi, T., 4 Nov 2016, In : Scientific Reports. 6, 36471.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    Trends for isolated amino acids and dipeptides: Conformation, divalent ion binding, and remarkable similarity of binding to calcium and lead

    Ropo, M., Blum, V. & Baldauf, C., 3 Nov 2016, In : Scientific Reports. 6, 35772.

    Research output: Contribution to journalArticleScientificpeer-review

  52. Published

    Atomistic determinants of co-enzyme Q reduction at the Qi-site of the cytochrome bc1 complex

    Postila, P. A., Kaszuba, K., Kuleta, P., Vattulainen, I., Sarewicz, M., Osyczka, A. & Róg, T., 26 Sep 2016, In : Scientific Reports. 6, 33607.

    Research output: Contribution to journalArticleScientificpeer-review

  53. Published

    Brain hemodynamic activity during viewing and re-viewing of comedy movies explained by experienced humor

    Jääskeläinen, I. P., Pajula, J., Tohka, J., Lee, H. J., Kuo, W. J. & Lin, F. H., 21 Jun 2016, In : Scientific Reports. 6, 27741.

    Research output: Contribution to journalArticleScientificpeer-review

  54. Lower bound for the spatial extent of localized modes in photonic-crystal waveguides with small random imperfections

    Faggiani, R., Baron, A., Zang, X., Lalouat, L., Schulz, S. A., O'Regan, B., Vynck, K., Cluzel, B., De Fornel, F., Krauss, T. F. & Lalanne, P., 1 Jun 2016, In : Scientific Reports. 6, 27037.

    Research output: Contribution to journalArticleScientificpeer-review

  55. Published

    1700 nm dispersion managed mode-locked bismuth fiber laser

    Noronen, T., Firstov, S., Dianov, E. & Okhotnikov, O. G., 21 Apr 2016, In : Scientific Reports. 6, 24876.

    Research output: Contribution to journalArticleScientificpeer-review

  56. Published

    Insulin resistance is associated with altered amino acid metabolism and adipose tissue dysfunction in normoglycemic women

    Wiklund, P., Zhang, X., Pekkala, S., Autio, R., Kong, L., Yang, Y., Keinänen-Kiukaanniemi, S., Alen, M. & Cheng, S., 15 Apr 2016, In : Scientific Reports. 6, 24540.

    Research output: Contribution to journalArticleScientificpeer-review

  57. Published

    Step down Vascular Calcification Analysis using State-of-the-Art Nanoanalysis Techniques

    Curtze, S. C., Kratz, M., Steinert, M. & Vogt, S., 16 Mar 2016, In : Scientific Reports. 6, 23285.

    Research output: Contribution to journalArticleScientificpeer-review

  58. Published

    Quasi two-dimensional astigmatic solitons in soft chiral metastructures

    Laudyn, U. A., Jung, P. S., Karpierz, M. A. & Assanto, G., 15 Mar 2016, In : Scientific Reports. 6, 22923.

    Research output: Contribution to journalArticleScientificpeer-review

  59. Published

    Behaviour of one-step spray-coated carbon nanotube supercapacitor in ambient light harvester circuit with printed organic solar cell and electrochromic display

    Tuukkanen, S., Välimäki, M., Lehtimäki, S., Vuorinen, T. & Lupo, D., 9 Mar 2016, In : Scientific Reports. 6, 22967.

    Research output: Contribution to journalArticleScientificpeer-review

  60. Published

    On the linear programming bound for linear Lee codes

    Astola, H. & Tabus, I., 1 Mar 2016, In : SpringerPlus. 5, 1, p. 1-13 13 p., 246.

    Research output: Contribution to journalArticleScientificpeer-review

  61. Published

    Optical detection of radon decay in air

    Sand, J., Ihantola, S., Peräjärvi, K., Toivonen, H. & Toivonen, J., 12 Feb 2016, In : Scientific Reports. 6, 21532.

    Research output: Contribution to journalArticleScientificpeer-review

  62. Published

    First passage time distribution in heterogeneity controlled kinetics: Going beyond the mean first passage time

    Godec, A. & Metzler, R., 8 Feb 2016, In : Scientific Reports. 6, 20349.

    Research output: Contribution to journalArticleScientificpeer-review

  63. Published

    Membrane omega-3 fatty acids modulate the oligomerisation kinetics of adenosine A2A and dopamine D2 receptors

    Guixà-González, R., Javanainen, M., Gómez-Soler, M., Cordobilla, B., Domingo, J. C., Sanz, F., Pastor, M., Ciruela, F., Martinez-Seara, H. & Selent, J., 22 Jan 2016, In : Scientific Reports. 6, 19839.

    Research output: Contribution to journalArticleScientificpeer-review

  64. Published

    Selective effect of cell membrane on synaptic neurotransmission

    Postila, P. A., Vattulainen, I. & Róg, T., 19 Jan 2016, In : Scientific Reports. 6, 19345.

    Research output: Contribution to journalArticleScientificpeer-review

  65. 2015
  66. Published

    Using multi-step proposal distribution for improved MCMC convergence in Bayesian network structure learning

    Larjo, A. & Lähdesmäki, H., 27 Dec 2015, In : Eurasip Journal on Bioinformatics and Systems Biology. 2015, 1, 6.

    Research output: Contribution to journalArticleScientificpeer-review

  67. Published

    Variance-corrected Michaelis-Menten equation predicts transient rates of single-enzyme reactions and response times in bacterial gene-regulation

    Pulkkinen, O. & Metzler, R., 4 Dec 2015, In : Scientific Reports. 5, 17820.

    Research output: Contribution to journalArticleScientificpeer-review

  68. Published

    Interleukin-6 and microRNA profiles induced by oral bacteria in human atheroma derived and healthy smooth muscle cells

    Pessi, T., Viiri, L. E., Raitoharju, E., Astola, N., Seppälä, I., Waldenberger, M., Lounatmaa, K., Davies, A. H., Lehtimäki, T., Karhunen, P. J. & Monaco, C., 1 Dec 2015, In : SpringerPlus. 4, 1

    Research output: Contribution to journalArticleScientificpeer-review

  69. Published

    Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays

    Honkela, A., Peltonen, J., Topa, H., Charapitsa, I., Matarese, F., Grote, K., Stunnenberg, H. G., Reid, G., Lawrence, N. D. & Rattray, M., 20 Oct 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 42, p. 13115-13120 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  70. Published

    Comparative proteomics reveals human pluripotent stem cell-derived limbal epithelial stem cells are similar to native ocular surface epithelial cells

    Mikhailova, A., Jylhä, A., Rieck, J., Nättinen, J., Ilmarinen, T., Veréb, Z., Aapola, U., Beuerman, R., Petrovski, G., Uusitalo, H. & Skottman, H., 1 Oct 2015, In : Scientific Reports. 5, 14684.

    Research output: Contribution to journalArticleScientificpeer-review

  71. Published

    Redox-induced activation of the proton pump in the respiratory complex I

    Sharma, V., Belevich, G., Gamiz-Hernandez, A. P., Róg, T., Vattulainen, I., Verkhovskaya, M. L., Wikström, M., Hummer, G. & Kaila, V. R. I., 15 Sep 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 37, p. 11571-11576 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  72. Published

    Segmented molecular design of self-healing proteinaceous materials

    Sariola, V., Pena-Francesch, A., Jung, H., Çetinkaya, M., Pacheco, C., Sitti, M. & Demirel, M. C., 1 Sep 2015, In : Scientific Reports. 5, 13482.

    Research output: Contribution to journalArticleScientificpeer-review

  73. Published

    A Highly Efficient Sensor Platform Using Simply Manufactured Nanodot Patterned Substrates

    Rasappa, S., Ghoshal, T., Borah, D., Senthamaraikannan, R., Holmes, J. D. & Morris, M. A., 20 Aug 2015, In : Scientific Reports. 5, 13270.

    Research output: Contribution to journalArticleScientificpeer-review

  74. Published

    Human iPSC derived disease model of MERTK-associated retinitis pigmentosa

    Lukovic, D., Castro, A. A., Delgado, A. B. G., Bernal, M. D. L. A. M., Pelaez, N. L., Lloret, A. D., Espejo, R. P., Kamenarova, K., Sánchez, L. F., Cuenca, N., Cortón, M., Fernandez, A. A., Sorkio, A., Skottman, H., Ayuso, C., Erceg, S. & Bhattacharya, S. S., 11 Aug 2015, In : Scientific Reports. 5, 12910.

    Research output: Contribution to journalArticleScientificpeer-review

  75. Published

    Caustics and rogue waves in an optical sea

    Mathis, A., Froehly, L., Toenger, S., Dias, F., Genty, G. & Dudley, J. M., 6 Aug 2015, In : Scientific Reports. 5, 12822.

    Research output: Contribution to journalArticleScientificpeer-review

  76. Published

    Real sequence effects on the search dynamics of transcription factors on DNA

    Bauer, M., Rasmussen, E. S., Lomholt, M. A. & Metzler, R., 8 Jul 2015, In : Scientific Reports. 5, 10072.

    Research output: Contribution to journalArticleScientificpeer-review

  77. Published

    Superdiffusion dominates intracellular particle motion in the supercrowded cytoplasm of pathogenic Acanthamoeba castellanii

    Reverey, J. F., Jeon, J-H., Bao, H., Leippe, M., Metzler, R. & Selhuber-Unkel, C., 30 Jun 2015, In : Scientific Reports. 5, 11690.

    Research output: Contribution to journalArticleScientificpeer-review

  78. Published

    Emergent rogue wave structures and statistics in spontaneous modulation instability

    Toenger, S., Godin, T., Billet, C., Dias, F., Erkintalo, M., Genty, G. & Dudley, J. M., 20 May 2015, In : Scientific Reports. 5, 10380.

    Research output: Contribution to journalArticleScientificpeer-review

  79. Published

    The evolutionary history of lethal metastatic prostate cancer

    Gundem, G., Van Loo, P., Kremeyer, B., Alexandrov, L. B., Tubio, J. M. C., Papaemmanuil, E., Brewer, D. S., Kallio, H. M. L., Högnäs, G., Annala, M., Kivinummi, K., Goody, V., Latimer, C., O'Meara, S., Dawson, K. J., Isaacs, W., Emmert-Buck, M. R., Nykter, M., Foster, C., Kote-Jarai, Z., Easton, D., Whitaker, H. C., Neal, D. E., Cooper, C. S., Eeles, R. A., Visakorpi, T., Campbell, P. J., McDermott, U., Wedge, D. C. & Bova, G. S., 15 Apr 2015, In : Nature. 520, 7547, p. 353-357 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  80. Published

    N-Glycosylation as determinant of epidermal growth factor receptor conformation in membranes

    Kaszuba, K., Grzybek, M., Orłowski, A., Danne, R., Róg, T., Simons, K., Coskun, Ü. & Vattulainen, I., 7 Apr 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 14, p. 4334-4339 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  81. Published

    Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression

    Turner, K. M., Sun, Y., Ji, P., Granberg, K. J., Bernard, B., Hu, L., Cogdell, D. E., Zhou, X., Yli-Harja, O., Nykter, M., Shmulevich, I., Yung, W. K. A., Fuller, G. N. & Zhang, W., 17 Mar 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 11, p. 3421-3426 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  82. Published

    Proton-coupled electron transfer and the role of water molecules in proton pumping by cytochrome c oxidase

    Sharma, V., Enkavi, G., Vattulainen, I., Róg, T. & Wikström, M., 17 Feb 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 7, p. 2040-2045 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  83. 2014
  84. Published

    Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes

    Tubio, J. M. C., Li, Y., Ju, Y. S., Martincorena, I., Cooke, S. L., Tojo, M., Gundem, G., Pipinikas, C. P., Zamora, J., Raine, K., Menzies, A., Roman-Garcia, P., Fullam, A., Gerstung, M., Shlien, A., Tarpey, P. S., Papaemmanuil, E., Knappskog, S., Van Loo, P., Ramakrishna, M., Davies, H. R., Marshall, J., Wedge, D. C., Teague, J. W., Butler, A. P., Nik-Zainal, S., Alexandrov, L., Behjati, S., Yates, L. R., Bolli, N., Mudie, L., Hardy, C., Martin, S., McLaren, S., O'Meara, S., Anderson, E., Maddison, M., Gamble, S., Foster, C., Warren, A. Y., Whitaker, H., Brewer, D., Eeles, R., Cooper, C., Neal, D., Lynch, A. G., Visakorpi, T., Isaacs, W. B., Van't Veer, L., Caldas, C., Desmedt, C., Sotiriou, C., Aparicio, S., Foekens, J. A., Eyfjörd, J. E., Lakhani, S. R., Thomas, G., Myklebost, O., Span, P. N., Børresen-Dale, A. L., Richardson, A. L., Van De Vijver, M., Vincent-Salomon, A., Van Den Eynden, G. G., Flanagan, A. M., Futreal, P. A., Janes, S. M., Bova, G. S., Stratton, M. R., McDermott, U. & Campbell, P. J., 1 Aug 2014, In : Science. 345, 6196, 1251343.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  85. Published

    Facile strain analysis of largely bending films by a surface-labelled grating method

    Akamatsu, N., Tashiro, W., Saito, K., Mamiya, J. I., Kinoshita, M., Ikeda, T., Takeya, J., Fujikawa, S., Priimagi, A. & Shishido, A., 20 Jun 2014, In : Scientific Reports. 4, 5377.

    Research output: Contribution to journalArticleScientificpeer-review

  86. Published

    Upstream Transcription Factor 1 (USF1) allelic variants regulate lipoprotein metabolism in women and USF1 expression in atherosclerotic plaque

    Fan, Y. M., Hernesniemi, J., Oksala, N., Levula, M., Raitoharju, E., Collings, A., Hutri-Kähönen, N., Juonala, M., Marniemi, J., Lyytikäinen, L. P., Seppälä, I., Mennander, A., Tarkka, M., Kangas, A. J., Soininen, P., Salenius, J. P., Klopp, N., Illig, T., Laitinen, T., Ala-Korpela, M., Laaksonen, R., Viikari, J., Kähönen, M., Raitakari, O. T. & Lehtimäki, T., 11 Apr 2014, In : Scientific Reports. 4, 4650.

    Research output: Contribution to journalArticleScientificpeer-review

  87. 2013
  88. Published

    Tooth wear and dentoalveolar remodeling are key factors of morphological variation in the Dmanisi mandibles

    Margvelashvili, A., Zollikofer, C. P. E., Lordkipanidze, D., Peltomäki, T. & De León, M. S. P., 22 Oct 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 43, p. 17278-17283 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  89. Published

    An ensemble of classifiers based on different texture descriptors for texture classification

    Paci, M., Nanni, L. & Severi, S., Jul 2013, In : Journal of King Saud University - Science. 25, 3, p. 235-244 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  90. Published

    Active optical clock based on four-level quantum system

    Zhang, T. G., Wang, Y. F., Zang, X. R., Zhuang, W. & Chen, J. B., Jun 2013, In : Chinese Science Bulletin. 58, 17, p. 2033-2038 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  91. Published

    Transient formation of water-conducting states in membrane transporters

    Li, J., Shaikh, S. A., Enkavi, G., Wen, P. C., Huang, Z. & Tajkhorshid, E., 7 May 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 19, p. 7696-7701 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  92. Published

    Structure-phenotype correlations of human CYP21A2 mutations in congenital adrenal hyperplasia

    Haider, S., Islam, B., D'Atri, V., Sgobba, M., Poojari, C., Sun, L., Yuen, T., Zaidi, M. & New, M. I., 12 Feb 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 7, p. 2605-2610 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  93. Published

    Subangstrom resolution x-ray structure details aquaporin-water interactions

    Eriksson, U. K., Fischer, G., Friemann, R., Enkavi, G., Tajkhorshid, E. & Neutze, R., 2013, In : Science. 340, 6138, p. 1346-1349 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  94. 2012
  95. Published

    Entropy analysis of word-length series of natural language texts: Effects of text language and genre

    Kalimeri, M., Constantoudis, V., Papadimitriou, C., Karamanos, K., Diakonos, F. K. & Papageorgiou, H., Sep 2012, In : INTERNATIONAL JOURNAL OF BIFURCATION AND CHAOS. 22, 9, 1250223.

    Research output: Contribution to journalArticleScientificpeer-review

  96. Published

    Structure and permeation mechanism of a mammalian urea transporter

    Levin, E. J., Cao, Y., Enkavi, G., Quick, M., Pan, Y., Tajkhorshid, E. & Zhou, M., 10 Jul 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 28, p. 11194-11199 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  97. Published

    A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data

    Emmert-Streib, F., De Matos Simoes, R., Tripathi, S., Glazko, G. V. & Dehmer, M., 2012, In : Scientific Reports. 2, 513.

    Research output: Contribution to journalArticleScientificpeer-review

  98. 2011
  99. Published

    Physical chemistry: Water's wafer-thin surface

    Jungwirth, P., 8 Jun 2011, In : Nature. 474, 7350, p. 168-169 2 p.

    Research output: Contribution to journalShort surveyScientificpeer-review