Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2020
  2. Published

    Mixed carbon substrates: a necessary nuisance or a missed opportunity?

    Liu, N., Santala, S. & Stephanopoulos, G., 1 Apr 2020, In : CURRENT OPINION IN BIOTECHNOLOGY. 62, p. 15-21 7 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  3. Published

    Co-culture of human induced pluripotent stem cell-derived retinal pigment epithelial cells and endothelial cells on double collagen-coated honeycomb films

    Calejo, M. T., Saari, J., Vuorenpää, H., Vuorimaa-Laukkanen, E., Kallio, P., Aalto-Setälä, K., Miettinen, S., Skottman, H., Kellomäki, M. & Juuti-Uusitalo, K., 2020, In : Acta Biomaterialia. 101, p. 327-343 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. 2019
  5. Published

    Transcription closed and open complex formation coordinate expression of genes with a shared promoter region

    Häkkinen, A., Oliveira, S. M. D., Neeli-Venkata, R. & Ribeiro, A. S., 1 Dec 2019, In : Journal of the Royal Society Interface. 16, 161, 11 p., 20190507.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Effects of elevated pressures on the activity of acidophilic bioleaching microorganisms

    Hajdu-Rahkama, R., Ahoranta, S., Lakaniemi, A-M. & Puhakka, J. A., 15 Oct 2019, In : Biochemical Engineering Journal. 150, 107286.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    An efficient auxin-inducible degron system with low basal degradation in human cells

    Li, S., Prasanna, X., Salo, V. T., Vattulainen, I. & Ikonen, E., 1 Sep 2019, In : Nature Methods. 16, 9, p. 866-869 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  8. E-pub ahead of print

    Pneumatic unidirectional cell stretching device for mechanobiological studies of cardiomyocytes

    Kreutzer, J., Viehrig, M., Pölönen, R. P., Zhao, F., Ojala, M., Aalto-Setälä, K. & Kallio, P., 23 Aug 2019, In : BIOMECHANICS AND MODELING IN MECHANOBIOLOGY.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Sodium channels enable fast electrical signaling and regulate phagocytosis in the retinal pigment epithelium

    Johansson, J. K., Karema-Jokinen, V. I., Hakanen, S., Jylhä, A., Uusitalo, H., Vihinen-Ranta, M., Skottman, H., Ihalainen, T. O. & Nymark, S., 15 Aug 2019, In : BMC BIOLOGY. 17, 1, 63.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Alkane and wax ester production from lignin-related aromatic compounds

    Salmela, M., Lehtinen, T., Efimova, E., Santala, S. & Santala, V., 1 Aug 2019, In : Biotechnology and Bioengineering. 116, 8, p. 1934-1945 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    An architectural understanding of natural sway frequencies in trees

    Jackson, T., Shenkin, A., Moore, J., Bunce, A., van Emmerik, T., Kane, B., Burcham, D., James, K., Selker, J., Calders, K., Origo, N., Disney, M., Burt, A., Wilkes, P., Raumonen, P., Gonzalez de Tanago Menaca, J., Lau, A., Herold, M., Goodman, R. C., Fourcaud, T. & Malhi, Y., 28 Jun 2019, In : Journal of the Royal Society. Interface. 16, 155, 1 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    The Role of Temperature and Lipid Charge on Intake/Uptake of Cationic Gold Nanoparticles into Lipid Bilayers

    Lolicato, F., Joly, L., Martinez-Seara, H., Fragneto, G., Scoppola, E., Baldelli Bombelli, F., Vattulainen, I., Akola, J. & Maccarini, M., 7 Jun 2019, In : Small. 15, 23, 1805046.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Connection of Collimation, Asymmetric Beaming, and Independent Transmission-Reflection Processes in Concentric-Groove Gratings Supporting Spoof Surface Plasmons

    Habib, M., Serebryannikov, A. E., Caglayan, H., Vandenbosch, G. A. E. & Ozbay, E., Jun 2019, In : Plasmonics. 14, 3, p. 721-729 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Effects of percutaneous transluminal angioplasty of superficial femoral artery on photoplethysmographic pulse transit times

    Peltokangas, M., Suominen, V., Vakhitov, D., Korhonen, J., Verho, J., Mattila, V. M., Romsi, P., Lekkala, J., Vehkaoja, A. & Oksala, N., May 2019, In : IEEE Journal of Biomedical and Health Informatics. 23, 3, p. 1058-1065

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Synthetic metabolic pathway for the production of 1-alkenes from lignin-derived molecules

    Luo, J., Lehtinen, T., Efimova, E., Santala, V. & Santala, S., 11 Mar 2019, In : Microbial Cell Factories. 18, 1, 13 p., 48.

    Research output: Contribution to journalArticleScientificpeer-review

  16. E-pub ahead of print

    Mechanical impact stimulation platform tailored for high-resolution light microscopy

    Halonen, H. T., Hyttinen, J. A. K. & Ihalainen, T. O., 2019, In : HEALTH AND TECHNOLOGY.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Optical wireless cochlear implants

    Trevlakis, S. E., Boulogeorgos, A. A. A., Sofotasios, P. C., Muhaidat, S. & Karagiannidis, G. K., 2019, In : Biomedical Optics Express. 10, 2, p. 707-730 24 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    O2-requiring molecular reporters of gene expression for anaerobic microorganisms

    Guglielmetti, S., Santala, V., Mangayil, R., Ciranna, A. & Karp, M. T., 2019, In : Biosensors and Bioelectronics. 123, p. 1-6 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Accepted/In press

    Quality and Capacity Analysis of Molecular Communications in Bacterial Synthetic Logic Circuits

    Martins, D. P., Barros, M. T. & Balasubramaniam, S., 2019, (Accepted/In press) In : IEEE Transactions on Nanobioscience.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Robocasting of Bioactive SiO2-P2O5-CaO-MgO-Na2O-K2O Glass Scaffolds

    Baino, F., Barberi, J., Fiume, E., Orlygsson, G., Massera, J. & Verné, E., 2019, In : Journal of Healthcare Engineering. 2019, 5153136.

    Research output: Contribution to journalArticleScientificpeer-review

  21. 2018
  22. Published

    Dynamic decoupling of biomass and wax ester biosynthesis in Acinetobacter baylyi by an autonomously regulated switch

    Santala, S., Efimova, E. & Santala, V., 1 Dec 2018, In : Metabolic Engineering Communications. 7, e00078.

    Research output: Contribution to journalArticleScientificpeer-review

  23. Published

    The importance of controlled mismatch of biomechanical compliances of implantable scaffolds and native tissue for articular cartilage regeneration

    Gasik, M., Zühlke, A., Haaparanta, A-M., Muhonen, V., Laine, K., Bilotsky, Y., Kellomäki, M. & Kiviranta, I., 30 Nov 2018, In : Frontiers in Bioengineering and Biotechnology. 6, NOV, 187.

    Research output: Contribution to journalArticleScientificpeer-review

  24. Published

    Super-resolution microscopy for biological specimens: Lensless phase retrieval in noisy conditions

    Shevkunov, I., Katkovnik, V., Petrov, N. V. & Egiazarian, K., 1 Nov 2018, In : Biomedical Optics Express. 9, 11, p. 5511-5523 13 p., #340805.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Molecular Communications Pulse-based Jamming Model for Bacterial Biofilm Suppression

    Martins, D. P., Leetanasaksakul, K., Barros, M. T., Thamchaipenet, A., Donnelly, W. & Balasubramaniam, S., Oct 2018, In : IEEE Transactions on Nanobioscience. 17, 4, p. 533-542 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Temperature control as key factor for optimal biohydrogen production from thermomechanical pulping wastewater

    Dessì, P., Porca, E., Lakaniemi, A-M., Collins, G. & Lens, P. N. L., 15 Sep 2018, In : Biochemical Engineering Journal. 137, p. 214-221 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Nocturnal Heart Rate Variability Spectrum Characterization in Preschool Children with Asthmatic Symptoms

    Milagro, J., Gil, E., Lazaro, J., Seppae, V. P., Malmberg, L. P., Pelkonen, A. S., Kotaniemi-Syrjanen, A., Makela, M., Viik, J. & Bailon, R., Sep 2018, In : IEEE Journal of Biomedical and Health Informatics. 22, 5, p. 1332-1340

    Research output: Contribution to journalArticleScientificpeer-review

  28. Published

    Production of alkanes from CO2 by engineered bacteria

    Lehtinen, T., Virtanen, H., Santala, S. & Santala, V., 21 Aug 2018, In : Biotechnology for Biofuels. 11, 228.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Selenate removal in biofilm systems: Effect of nitrate and sulfate on selenium removal efficiency, biofilm structure and microbial community

    Tan, L. C., Espinosa-Ortiz, E. J., Nancharaiah, Y. V., van Hullebusch, E. D., Gerlach, R. & Lens, P. N., Aug 2018, In : Journal of Chemical Technology and Biotechnology. 93, 8, p. 2380-2389

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Metabolic pairing of aerobic and anaerobic production in a one-pot batch cultivation

    Salmela, M., Lehtinen, T., Efimova, E., Santala, S. & Mangayil, R., 3 Jul 2018, In : Biotechnology for Biofuels. 11, 1, 187.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Pectin and Mucin Enhance the Bioadhesion of Drug Loaded Nanofibrillated Cellulose Films

    Laurén, P., Paukkonen, H., Lipiäinen, T., Dong, Y., Oksanen, T., Räikkönen, H., Ehlers, H., Laaksonen, P., Yliperttula, M. & Laaksonen, T., 1 Jul 2018, In : Pharmaceutical Research. 35, 7, 145.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Segmentation of vessel structures from photoacoustic images with reliability assessment

    Raumonen, P. & Tarvainen, T., 1 Jul 2018, In : Biomedical Optics Express. 9, 7, p. 2887-2904 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Switchable light reflectance in dilute magneto-optical colloids based on nickel ferrite nanowires

    Sutka, A., Timusk, M., Joost, U., Ignatans, R. & Maiorov, M., 2 May 2018, In : e-Journal of Surface Science and Nanotechnology. 16, p. 119-121 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Non-intersecting leaf insertion algorithm for tree structure models

    Åkerblom, M., Raumonen, P., Casella, E., Disney, M. I., Danson, F. M., Gaulton, R., Schofield, L. A. & Kaasalainen, M., 6 Apr 2018, In : Interface Focus. 8, 2, 20170045.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Uncertainty in multispectral lidar signals caused by incidence angle effects

    Kaasalainen, S., Åkerblom, M., Nevalainen, O., Hakala, T. & Kaasalainen, M., 6 Apr 2018, In : Interface Focus. 8, 2, 20170033.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Weighing trees with lasers: Advances, challenges and opportunities

    Disney, M. I., Boni Vicari, M., Burt, A., Calders, K., Lewis, S. L., Raumonen, P. & Wilkes, P., 6 Apr 2018, In : Interface Focus. 8, 2, 20170048.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Improved fatty aldehyde and wax ester production by overexpression of fatty acyl-CoA reductases

    Lehtinen, T., Efimova, E., Santala, S. & Santala, V., 8 Feb 2018, In : Microbial Cell Factories. 17, 1, 19.

    Research output: Contribution to journalArticleScientificpeer-review

  38. 2017
  39. Published

    Azopolymer photopatterning for directional control of angiogenesis

    Fedele, C., De Gregorio, M., Netti, P. A., Cavalli, S. & Attanasio, C., 1 Nov 2017, In : Acta Biomaterialia. 63, p. 317-325 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    Elucidation of Compression-Induced Surface Crystallization in Amorphous Tablets Using Sum Frequency Generation (SFG) Microscopy

    Mah, P. T., Novakovic, D., Saarinen, J., van Landeghem, S., Peltonen, L., Laaksonen, T., Isomäki, A. & Strachan, C. J., May 2017, In : Pharmaceutical Research. 34, 5, p. 957-970 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Tunable Plasmonic Silver Nanodomes for Surface-Enhanced Raman Scattering

    Kahraman, M., Ozbay, A., Yuksel, H., Solmaz, R., Demir, B. & Caglayan, H., 5 Apr 2017, (Accepted/In press) In : Plasmonics. p. 1-11 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  42. Published

    Multivariate statistical analysis for the identification of potential seafood spoilage indicators

    Kuuliala, L., Abatih, E., Ioannidis, A. G., Vanderroost, M., De Meulenaer, B., Ragaert, P. & Devlieghere, F., 1 Feb 2017, In : Food Control. 84, p. 49-60 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Aligned Poly(ε-caprolactone) Nanofibers Guide the Orientation and Migration of Human Pluripotent Stem Cell-Derived Neurons, Astrocytes, and Oligodendrocyte Precursor Cells In Vitro

    Hyysalo, A., Ristola, M., Joki, T., Honkanen, M., Vippola, M. & Narkilahti, S., 2017, In : MACROMOLECULAR BIOSCIENCE. 17, 7, 1600517.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Electrical Contacts in SOI MEMS Using Aerosol Jet Printing

    Khorramdel, B., Torkkeli, A. & Mäntysalo, M., 2017, In : IEEE Journal of the Electron Devices Society. 6, p. 34-40

    Research output: Contribution to journalArticleScientificpeer-review

  45. 2016
  46. Published

    Abstract: Direction as a vibration loading parameter in bone tissue engineering

    Halonen, H., Kyllönen, L., Ihalainen, T. O., Miettinen, S. & Hyttinen, J., 25 Nov 2016.

    Research output: Other conference contributionPaper, poster or abstractScientific

  47. Published

    Selenium: environmental significance, pollution, and biological treatment technologies

    Tan, L. C., Nancharaiah, Y. V., van Hullebusch, E. D. & Lens, P. N. L., 1 Sep 2016, In : Biotechnology Advances. 34, 5, p. 886-907 22 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  48. Published

    Abstract: Direction as a vibration loading parameter in osteogenic differentiation of adipose stem cells

    Halonen, H., Kyllönen, L., Ihalainen, T. O., Miettinen, S. & Hyttinen, J., 10 Jul 2016. 1 p.

    Research output: Other conference contributionPaper, poster or abstractScientific

  49. Published

    Biological and Bioelectrochemical Recovery of Critical and Scarce Metals

    Nancharaiah, Y. V., Mohan, S. V. & Lens, P. N. L., 2016, In : Trends in Biotechnology. 34, 2, p. 137-155 19 p.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    Improved properties for packaging materials by nanoscale surface modification and ALD barrier coating

    Lahti, J., Lavonen, J., Lahtinen, K., Johansson, P., Seppänen, T. & Cameron, D. C., 2016, TAPPI International Conference on Nanotechnology for Renewable Materials 2016. TAPPI Press, Vol. 2. p. 684-706 23 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  51. Published

    Roll-to-roll application of photocatalytic TiO2 nanoparticles for printed functionality

    Saarinen, J. J., Valtakari, D., Bollström, R., Stepien, M., Haapanen, J., Mäkelä, J. M. & Toivakka, M., 2016, Advanced Manufacturing, Electronics and Microsystems: TechConnect Briefs 2016. TechConnect, Vol. 4. p. 47-50 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  52. 2015
  53. Published

    Gene expression analysis upon lncRNA DDSR1 knockdown in human fibroblasts

    Jia, L., Sun, Z., Wu, X., Misteli, T. & Sharma, V., 1 Dec 2015, In : Genomics Data. 6, p. 277-279 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  54. Published

    Metabolic engineering of Acinetobacter baylyi ADP1 for removal of Clostridium butyricum growth inhibitors produced from lignocellulosic hydrolysates

    Kannisto, M. S., Mangayil, R. K., Shrivastava-Bhattacharya, A., Pletschke, B. I., Karp, M. T. & Santala, V. P., 1 Dec 2015, In : Biotechnology for Biofuels. 8, 1, 198.

    Research output: Contribution to journalArticleScientificpeer-review

  55. Published

    Tuning the Plasmonic Extinction Resonances of Hexagonal Arrays of Ag Nanoparticles

    Ravi, A., Luthra, A., Teixeira, F. L., Berger, P. R. & Coe, J. V., 1 Dec 2015, In : Plasmonics. 10, 6, p. 1505-1512 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  56. Published

    Simultaneous nutrient removal and lipid production with Chlorella vulgaris on sterilized and non-sterilized anaerobically pretreated piggery wastewater

    Marjakangas, J. M., Chen, C. Y., Lakaniemi, A. M., Puhakka, J. A., Whang, L. M. & Chang, J. S., 5 Nov 2015, In : Biochemical Engineering Journal. 103, p. 177-184 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  57. Published

    Comparison of different cationized proteins as biomaterials for nanoparticle-based ocular gene delivery

    Zorzi, G. K., Párraga, J. E., Seijo, B. & Sanchez, A., 1 Nov 2015, In : Colloids and Surfaces B: Biointerfaces. 135, p. 533-541 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  58. Published

    ESD qualification data used as the basis for building electrostatic discharge protected areas

    Tamminen, P., Viheriäkoski, T., Sydänheimo, L. & Ukkonen, L., 1 Oct 2015, In : Journal of Electrostatics. 77, p. 174-181 8 p., 3024.

    Research output: Contribution to journalArticleScientificpeer-review

  59. Published

    Effects of anode potentials on bioelectrogenic conversion of xylose and microbial community compositions

    Kokko, M. E., Mäkinen, A. E., Sulonen, M. L. K. & Puhakka, J. A., 5 Sep 2015, In : Biochemical Engineering Journal. 101, p. 248-252 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  60. Published

    His-tagged norovirus-like particles: A versatile platform for cellular delivery and surface display

    Koho, T., Ihalainen, T. O., Stark, M., Uusi-Kerttula, H., Wieneke, R., Rahikainen, R., Blazevic, V., Marjomäki, V., Tampé, R., Kulomaa, M. S. & Hytönen, V. P., 21 Jul 2015, In : European Journal of Pharmaceutics and Biopharmaceutics. 96, p. 22-31 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  61. Published

    Kinetics of the cellular intake of a gene expression inducer at high concentrations

    Tran, H., Oliveira, S. M. D. D., Goncalves, N. & Ribeiro, A. S., 20 Jul 2015, In : Molecular Biosystems. 11, 9, p. 2579-2587 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  62. Published

    Bioactive glass ions as strong enhancers of osteogenic differentiation in human adipose stem cells

    Ojansivu, M., Vanhatupa, S., Björkvik, L., Häkkänen, H., Kellomäki, M., Autio, R., Ihalainen, J. A., Hupa, L. & Miettinen, S., 15 Jul 2015, In : Acta Biomaterialia. 21, p. 190-203 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  63. Published

    Lipid production by eukaryotic microorganisms isolated from palm oil mill effluent

    Marjakangas, J. M., Lakaniemi, A. M., Koskinen, P. E. P., Chang, J. S. & Puhakka, J. A., 5 Jul 2015, In : Biochemical Engineering Journal. 99, p. 48-54 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  64. Published

    Bioluminescent whole-cell reporter gene assays as screening tools in the identification of antimicrobial natural product extracts

    Nybond, S., Karp, M., Yrjönen, T. & Tammela, P., 1 Jul 2015, In : Journal of Microbiological Methods. 114, p. 54-56 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  65. Published

    Single-cell kinetics of a repressilator when implemented in a single-copy plasmid

    Oliveira, S. M. D., Chandraseelan, J. G., Häkkinen, A., Goncalves, N. S. M., Yli-Harja, O., Startceva, S. & S. Ribeiro, A., 1 Jul 2015, In : Molecular Biosystems. 11, 7, p. 1939-1945 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  66. Published

    Using shRNA experiments to validate gene regulatory networks

    Olsen, C., Fleming, K., Prendergast, N., Rubio, R., Emmert-Streib, F., Bontempi, G., Quackenbush, J. & Haibe-Kains, B., 1 Jun 2015, In : Genomics Data. 4, p. 123-126 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  67. Published

    O-glycan repertoires on a mucin-type reporter protein expressed in CHO cell pools transiently transfected with O-glycan core enzyme cDNAs

    Liu, J., Jin, C., Cherian, R. M., Karlsson, N. G. & Holgersson, J., 1 Apr 2015, In : Journal of Biotechnology. 199, p. 77-89 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  68. Published

    Ageing-associated changes in the human DNA methylome: Genomic locations and effects on gene expression

    Marttila, S., Kananen, L., Häyrynen, S., Jylhävä, J., Nevalainen, T., Hervonen, A., Jylhä, M., Nykter, M. & Hurme, M., 14 Mar 2015, In : BMC Genomics. 16, 1, 179.

    Research output: Contribution to journalArticleScientificpeer-review

  69. Published

    Multi-stable dynamics of the non-adiabatic repressilator

    Potapov, I., Zhurov, B. & Volkov, E., 6 Mar 2015, In : Journal of the Royal Society. Interface. 12, 104, 20141315.

    Research output: Contribution to journalArticleScientificpeer-review

  70. Published

    Efficient preparation of shuffled DNA libraries through recombination (Gateway) cloning

    Lehtonen, S. I., Taskinen, B., Ojala, E., Kukkurainen, S., Rahikainen, R., Riihimäki, T. A., Laitinen, O. H., Kulomaa, M. S. & Hytönen, V. P., 2015, In : Protein Engineering Design and Selection. 28, 1, p. 23-28 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  71. Interaction with serum albumin as a factor of the photodynamic efficacy of novel bacteriopurpurinimide derivatives

    Akimova, A. V., Rychkov, G. N., Grin, M. A., Filippova, N. A., Golovina, G. V., Durandin, N. A., Vinogradov, A. M., Kokrashvili, T. A., Mironov, A. F., Shtil, A. A. & Kuzmin, V. A., 2015, In : ACTA NATURAE. 7, 1, p. 109-116 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  72. 2014
  73. Published

    Switchavidin: Reversible biotin-avidin-biotin bridges with high affinity and specificity

    Taskinen, B., Zauner, D., Lehtonen, S. I., Koskinen, M., Thomson, C., Kähkönen, N., Kukkurainen, S., Määttä, J. A. E., Ihalainen, T. O., Kulomaa, M. S., Gruber, H. J. & Hytönen, V. P., 17 Dec 2014, In : Bioconjugate Chemistry. 25, 12, p. 2233-2243 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  74. Published

    The talin-integrin interface under mechanical stress

    Kukkurainen, S., Määttä, J. A., Saeger, J., Valjakka, J., Vogel, V. & Hytönen, V. P., 1 Dec 2014, In : Molecular Biosystems. 10, 12, p. 3217-3228 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  75. Published

    Rapid, Brushless Self-assembly of a PS-b-PDMS Block Copolymer for Nanolithography

    Rasappa, S., Schulte, L., Borah, D., Morris, M. A. & Ndoni, S., 1 Oct 2014, In : Colloids and Interface Science Communications. 2, p. 1-5 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  76. Published

    Mixotrophic cultivation of oleaginous Chlorella sp. KR-1 mediated by actual coal-fired flue gas for biodiesel production

    Praveenkumar, R., Kim, B., Choi, E., Lee, K., Cho, S., Hyun, J. S., Park, J. Y., Lee, Y. C., Lee, H. U., Lee, J. S. & Oh, Y. K., 12 Sep 2014, In : Bioprocess and Biosystems Engineering. 37, 10, p. 2083-2094 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  77. Published

    Molecular engineering of avidin and hydrophobin for functional self-assembling interfaces

    Kurppa, K., Hytönen, V. P., Nakari-Setälä, T., Kulomaa, M. S. & Linder, M. B., 1 Aug 2014, In : Colloids and Surfaces B: Biointerfaces. 120, p. 102-109 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  78. Published

    Assessment of metabolic flux distribution in the thermophilic hydrogen producer Caloramator celer as affected by external pH and hydrogen partial pressure

    Ciranna, A., Pawar, S. S., Santala, V., Karp, M. & van Niel, E. W. J., 28 Mar 2014, In : Microbial Cell Factories. 13, 1, 48.

    Research output: Contribution to journalArticleScientificpeer-review

  79. Published

    Metabolic engineering of Acinetobacter baylyi ADP1 for improved growth on gluconate and glucose

    Kannisto, M., Aho, T., Karp, M. & Santala, V., 2014, In : Applied and Environmental Microbiology. 80, 22, p. 7021-7027 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  80. Published

    Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain

    Guglielmetti, S., Zanoni, I., Balzaretti, S., Miriani, M., Taverniti, V., de Noni, I., Presti, I., Stuknyte, M., Scarafoni, A., Arioli, S., Iametti, S., Bonomi, F., Mora, D., Karp, M. & Granucci, F., 2014, In : Applied and Environmental Microbiology. 80, 17, p. 5170-5177 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  81. Published

    Report from the 2nd Summer School in Computational Biology organized by the Queen's University of Belfast

    Emmert-Streib, F., Zhang, S. D. & Hamilton, P., 2014, In : Genomics Data. 2, p. 37-39 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  82. Published

    TgaA, a VirB1-like component belonging to a putative type IV secretion system of Bifidobacterium bifidum MIMBb75

    Guglielmetti, S., Balzaretti, S., Taverniti, V., Miriani, M., Milani, C., Scarafoni, A., Corona, S., Ciranna, A., Arioli, S., Santala, V., Iametti, S., Bonomi, F., Ventura, M., Mora, D. & Karp, M., 2014, In : Applied and Environmental Microbiology. 80, 17, p. 5161-5169 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  83. 2013
  84. Published

    Reversible biofunctionalization of surfaces with a switchable mutant of avidin

    Pollheimer, P., Taskinen, B., Scherfler, A., Gusenkov, S., Creus, M., Wiesauer, P., Zauner, D., Schöfberger, W., Schwarzinger, C., Ebner, A., Tampé, R., Stutz, H., Hytönen, V. P. & Gruber, H. J., 16 Oct 2013, In : Bioconjugate Chemistry. 24, 10, p. 1656-1668 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  85. Published

    Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information

    Matos Simoes, R. D., Dehmer, M. & Emmert-Streib, F., 11 May 2013, In : BMC Genomics. 14, 1, 324.

    Research output: Contribution to journalArticleScientificpeer-review

  86. Published

    Hollow fibers of poly(lactide-co-glycolide) and poly(ε-caprolactone) blends for vascular tissue engineering applications

    Diban, N., Haimi, S., Bolhuis-Versteeg, L., Teixeira, S., Miettinen, S., Poot, A., Grijpma, D. & Stamatialis, D., 2013, In : Acta Biomaterialia. 9, 5, p. 6450-6458 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  87. Published

    Molecular modeling of the PEGylated bilayer as a model for the PEGylated liposome surface in the bloodstream

    Magarkar, A., Stepniewski, M., Karakas, E., Rog, T., Yliperttula, M., Urtti, A. & Bunker, A., 2013, Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013. Vol. 2. p. 576-578 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  88. Published

    Person identification from actions based on Artificial Neural Networks

    Iosifidis, A., Tefas, A. & Pitas, I., 2013, IEEE Workshop on Computational Intelligence in Biometrics and Identity Management, CIBIM. p. 7-13 7 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  89. Published

    Person identification from actions based on dynemes and discriminant learning

    Iosifidis, A., Tefas, A. & Pitas, I., 2013, 2013 International Workshop on Biometrics and Forensics, IWBF 2013.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  90. Published

    Roll-to-roll atomic layer deposition for flexible substrates

    Lahtinen, K., Maydannik, P., Kääriäinen, T., Seppänen, T., Cameron, D. C., Johansson, P., Kraft, M. & Kuusipalo, J., 2013, TAPPI International Conference on Nanotechnology 2013. TAPPI Press, p. 726-739 14 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  91. Published

    Undercut edges for robust capillary self-alignment in hybrid microassembly

    Liimatainen, V., Sariola, V. & Zhou, Q., 2013, 8th Annual IEEE International Conference on Nano/Micro Engineered and Molecular Systems, IEEE NEMS 2013. p. 1088-1091 4 p. 6559911

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  92. Published

    Wear resistance of nanoparticle coatings on paperboard

    Stepien, M., Chinga-Carrasco, G., Saarinen, J. J., Teisala, H., Tuominen, M., Aromaa, M., Haapanen, J., Kuusipalo, J., Mäkelä, J. M. & Toivakka, M., 2013, TAPPI International Conference on Nanotechnology 2013. TAPPI Press, p. 821-829 9 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  93. 2012
  94. Published

    Oxidative stress response and fatty acid changes associated with bioaccumulation of chromium [Cr(VI)] by a fresh water cyanobacterium Chroococcus sp.

    Kumar, M. S., Praveenkumar, R., Ilavarasi, A., Rajeshwari, K. & Thajuddin, N., Feb 2012, In : Biotechnology Letters. 34, 2, p. 247-251 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  95. Published

    Production of l-xylose from l-xylulose using Escherichia coli l-fucose isomerase

    Usvalampi, A., Turunen, O., Valjakka, J., Pastinen, O., Leisola, M. & Nyyssölä, A., 5 Jan 2012, In : ENZYME AND MICROBIAL TECHNOLOGY. 50, 1, p. 71-76 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  96. Published

    DNA family shuffling within the chicken avidin protein family - A shortcut to more powerful protein tools

    Niederhauser, B., Siivonen, J., Määttä, J. A., Jänis, J., Kulomaa, M. S. & Hytönen, V. P., Jan 2012, In : Journal of Biotechnology. 157, 1, p. 38-49 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  97. 2011
  98. Published

    Identification of proprotein convertase substrates using genome-wide expression correlation analysis

    Turpeinen, H., Kukkurainen, S., Pulkkinen, K., Kauppila, T., Ojala, K., Hytönen, V. P. & Pesu, M., 20 Dec 2011, In : BMC Genomics. 12, 618.

    Research output: Contribution to journalArticleScientificpeer-review

  99. Published

    Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage

    Amps, K., Andrews, P. W., Anyfantis, G., Armstrong, L., Avery, S., Baharvand, H., Baker, J., Baker, D., Munoz, M. B., Beil, S., Benvenisty, N., Ben-Yosef, D., Biancotti, J. C., Bosman, A., Brena, R. M., Brison, D., Caisander, G., Camarasa, M. V., Chen, J., Chiao, E., Choi, Y. M., Choo, A. B. H., Collins, D., Colman, A., Crook, J. M., Daley, G. Q., Dalton, A., De Sousa, P. A., Denning, C., Downie, J., Dvorak, P., Montgomery, K. D., Feki, A., Ford, A., Fox, V., Fraga, A. M., Frumkin, T., Ge, L., Gokhale, P. J., Golan-Lev, T., Gourabi, H., Gropp, M., Guangxiu, L., Hampl, A., Harron, K., Healy, L., Herath, W., Holm, F., Hovatta, O., Hyllner, J., Inamdar, M. S., Irwanto, A. K., Ishii, T., Jaconi, M., Jin, Y., Kimber, S., Kiselev, S., Knowles, B. B., Kopper, O., Kukharenko, V., Kuliev, A., Lagarkova, M. A., Laird, P. W., Lako, M., Laslett, A. L., Lavon, N., Lee, D. R., Lee, J. E., Li, C., Lim, L. S., Ludwig, T. E., Ma, Y., Maltby, E., Mateizel, I., Mayshar, Y., Mileikovsky, M., Minger, S. L., Miyazaki, T., Moon, S. Y., Moore, H., Mummery, C., Nagy, A., Nakatsuji, N., Narwani, K., Oh, S. K. W., Oh, S. K., Olson, C., Otonkoski, T., Pan, F., Park, I. H., Pells, S., Pera, M. F., Pereira, L. V., Qi, O., Raj, G. S., Reubinoff, B., Robins, A., Robson, P., Rossant, J., Salekdeh, G. H., Schulz, T. C., Sermon, K., Mohamed, J. S., Shen, H., Sherrer, E., Sidhu, K., Sivarajah, S., Skottman, H., Spits, C., Stacey, G. N., Strehl, R., Strelchenko, N., Suemori, H., Sun, B., Suuronen, R., Takahashi, K., Tuuri, T., Venu, P., Verlinsky, Y., Oostwaard, D. W. V., Weisenberger, D. J., Wu, Y., Yamanaka, S., Young, L. & Zhou, Q., Dec 2011, In : Nature Biotechnology. 29, 12, p. 1132-1144 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  100. Published

    Versatile bio-ink for covalent immobilization of chimeric avidin on sol-gel substrates

    Heikkinen, J. J., Kivimäki, L., Määttä, J. A. E., Mäkelä, I., Hakalahti, L., Takkinen, K., Kulomaa, M. S., Hytönen, V. P. & Hormi, O. E. O., 15 Oct 2011, In : Colloids and Surfaces B: Biointerfaces. 87, 2, p. 409-414 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  101. Published

    Hybrid nanoparticle design based on cationized gelatin and the polyanions dextran sulfate and chondroitin sulfate for ocular gene therapy

    Zorzi, G. K., Párraga, J. E., Seijo, B. & Sánchez, A., 7 Jul 2011, In : MACROMOLECULAR BIOSCIENCE. 11, 7, p. 905-913 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  102. Published

    Modification of the loops in the ligand-binding site turns avidin into a steroid-binding protein

    Riihimäki, T. A., Hiltunen, S., Rangl, M., Nordlund, H. R., Määttä, J. A. E., Ebner, A., Hinterdorfer, P., Kulomaa, M. S., Takkinen, K. & Hytönen, V. P., 9 Jun 2011, In : BMC BIOTECHNOLOGY. 11, 64.

    Research output: Contribution to journalArticleScientificpeer-review

  103. Published

    Networks for systems biology: Conceptual connection of data and function

    Emmert-Streib, F. & Dehmer, M., May 2011, In : IET Systems Biology. 5, 3, p. 185-207 23 p.

    Research output: Contribution to journalArticleScientificpeer-review

  104. Published

    Chimeric avidin shows stability against harsh chemical conditions-biochemical analysis and 3D structure

    Määttä, J. A. E., Eisenberg-Domovich, Y., Nordlund, H. R., Hayouka, R., Kulomaa, M. S., Livnah, O. & Hytönen, V. P., Mar 2011, In : Biotechnology and Bioengineering. 108, 3, p. 481-490 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  105. 2010
  106. Local network-based measures to assess the inferability of different regulatory networks

    Emmert-Streib, F. & Altay, G., Jul 2010, In : IET Systems Biology. 4, 4, p. 277-288 12 p., ISBEAT000004000004000277000001.

    Research output: Contribution to journalArticleScientificpeer-review

  107. 2008
  108. Photostable second-harmonic generation from a single KTiOPO4 nanocrystal for nonlinear microscopy

    Le Xuan, L., Zhou, C., Slablab, A., Chauvat, D., Tard, C., Perruchas, S., Gacoin, T., Villeval, P. & Roch, J-F., Sep 2008, In : Small. 4, 9, p. 1332-1336 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  109. 2003
  110. Modeling of anaerobic degradation of solid slaughterhouse waste: Inhibition effects of long-chain fatty acids or ammonia

    Lokshina, L. Y., Vavilin, V. A., Salminen, E. & Rintala, J., Apr 2003, In : Applied Biochemistry and Biotechnology. 109, 1-3, p. 15-32 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  111. 1997
  112. Published

    Start-up and Operation of Laboratory-Scale Thermophilic Upflow Anaerobic Sludge Blanket Reactors Treating Vegetable Processing Wastewaters

    Lepistö, S. S. & Rintala, J. A., Mar 1997, In : Journal of Chemical Technology and Biotechnology. 68, 3, p. 331-339 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  113. 1994
  114. A two-stage thermophilic anaerobic process for the treatment of source sorted household solid waste

    Rintala, J. A. & Ahring, B. K., Oct 1994, In : Biotechnology Letters. 16, 10, p. 1097-1102 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  115. Thermophilic anaerobic digestion of source-sorted household solid waste: the effects of enzyme additions

    Rintala, J. A. & Ahring, B. K., Feb 1994, In : Applied Microbiology and Biotechnology. 40, 6, p. 916-919 4 p.

    Research output: Contribution to journalArticleScientificpeer-review