Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2020
  2. Published

    AR and ERG drive the expression of prostate cancer specific long noncoding RNAs

    Kohvakka, A., Sattari, M., Shcherban, A., Annala, M., Urbanucci, A., Kesseli, J., Tammela, T. L. J., Kivinummi, K., Latonen, L., Nykter, M. & Visakorpi, T., 2020, In : Oncogene. 39, p. 5241–5251 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup

    Palma, C. S. D., Kandavalli, V., Bahrudeen, M. N. M., Minoia, M., Chauhan, V., Dash, S. & Ribeiro, A. S., 2020, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1863, 5, 13 p., 194515.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    High-content imaging and structure-based predictions reveal functional differences between Niemann-Pick C1 variants

    Vanharanta, L., Peränen, J., Pfisterer, S. G., Enkavi, G., Vattulainen, I. & Ikonen, E., 2020, In : Traffic. 21, 5, p. 386-397 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. 2019
  6. Published

    Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions

    Javanainen, M., Enkavi, G., Guixà-Gonzaléz, R., Kulig, W., Martinez-Seara, H., Levental, I. & Vattulainen, I., 1 May 2019, In : PLoS Computational Biology. 15, 5, e1007033.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Vertical stratification of bacteria and archaea in sediments of a small boreal humic lake

    Rissanen, A. J., Peura, S., Mpamah, P. A., Taipale, S., Tiirola, M., Biasi, C., Mäki, A. & Nykänen, H., 1 Mar 2019, In : FEMS Microbiology Letters. 366, 5

    Research output: Contribution to journalArticleScientificpeer-review

  8. Published

    Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression

    Startceva, S., Kandavalli, V. K., Visa, A. & Ribeiro, A. S., 1 Feb 2019, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1862, 2, p. 119-128 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. E-pub ahead of print

    Do bone geometric properties of the proximal femoral diaphysis reflect loading history, muscle properties, or body dimensions?

    Niinimäki, S., Narra, N., Härkönen, L., Abe, S., Nikander, R., Hyttinen, J., Knüsel, C. J. & Sievänen, H., 2019, In : American Journal of Human Biology. e23246.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    L1000 viewer: A search engine and Web interface for the LINCS data repository

    Musa, A., Tripathi, S., Dehmer, M. & Emmert-Streib, F., 2019, In : Frontiers in Genetics. 10, JUN, 557.

    Research output: Contribution to journalArticleScientificpeer-review

  11. Published

    Prostate cancer gene regulatory network inferred from RNA-seq data

    Moore, D., Simoes, R. D. M., Dehmer, M. & Emmert-Streib, F., 2019, In : CURRENT GENOMICS. 20, 1, p. 38-48 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  12. 2018
  13. Published

    Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling

    Pantsar, T., Rissanen, S., Dauch, D., Laitinen, T., Vattulainen, I. & Poso, A., 10 Sep 2018, In : PLoS Computational Biology. 14, 9, e1006458.

    Research output: Contribution to journalArticleScientificpeer-review

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