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2019
Published
Phosphorylation of NFATC1 at PIM1 target sites is essential for its ability to promote prostate cancer cell migration and invasion
Eerola, S. K., Santio, N. M., Rinne, S., Kouvonen, P., Corthals, G. L., Scaravilli, M., Scala, G., Serra, A., Greco, D., Ruusuvuori, P., Latonen, L., Rainio, E. M., Visakorpi, T. & Koskinen, P. J., 15 Nov 2019, In : CELL COMMUNICATION AND SIGNALING. 17, 1, 148.
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Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry
Bahrudeen, M. N. M., Chauhan, V., Palma, C. S. D., Oliveira, S. M. D., Kandavalli, V. K. & Ribeiro, A. S., 22 Oct 2019, In : Journal of Microbiological Methods. 166, 105745.
Research output: Contribution to journal › Article › Scientific › peer-review

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An efficient auxin-inducible degron system with low basal degradation in human cells
Li, S., Prasanna, X., Salo, V. T., Vattulainen, I. & Ikonen, E., 1 Sep 2019, In : Nature Methods. 16, 9, p. 866-869 4 p.
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Behavior of the DPH fluorescence probe in membranes perturbed by drugs
Poojari, C., Wilkosz, N., Lira, R. B., Dimova, R., Jurkiewicz, P., Petka, R., Kepczynski, M. & Róg, T., 1 Sep 2019, In : Chemistry and Physics of Lipids. 223, 104784.
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Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions
Javanainen, M., Enkavi, G., Guixà-Gonzaléz, R., Kulig, W., Martinez-Seara, H., Levental, I. & Vattulainen, I., 1 May 2019, In : PLoS Computational Biology. 15, 5, e1007033.
Research output: Contribution to journal › Article › Scientific › peer-review

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Vertical stratification of bacteria and archaea in sediments of a small boreal humic lake
Rissanen, A. J., Peura, S., Mpamah, P. A., Taipale, S., Tiirola, M., Biasi, C., Mäki, A. & Nykänen, H., 1 Mar 2019, In : FEMS Microbiology Letters. 366, 5
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Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks
Liimatainen, K., Kananen, L., Latonen, L. & Ruusuvuori, P., 15 Feb 2019, In : BMC Bioinformatics. 20, 1, 80.
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Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression
Startceva, S., Kandavalli, V. K., Visa, A. & Ribeiro, A. S., 1 Feb 2019, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1862, 2, p. 119-128 10 p.
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2018
Published
SCIP: a single-cell image processor toolbox
Martins, L., Neeli-Venkata, R., Oliveira, S. M. D., Häkkinen, A., Ribeiro, A. S. & Fonseca, J. M., 15 Dec 2018, In : Bioinformatics. 34, 24, p. 4318-4320 3 p.
Research output: Contribution to journal › Article › Scientific › peer-review

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Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling
Pantsar, T., Rissanen, S., Dauch, D., Laitinen, T., Vattulainen, I. & Poso, A., 10 Sep 2018, In : PLoS Computational Biology. 14, 9, e1006458.
Research output: Contribution to journal › Article › Scientific › peer-review

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Publications

Phosphorylation of NFATC1 at PIM1 target sites is essential for its ability to promote prostate cancer cell migration and invasion

Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry

An efficient auxin-inducible degron system with low basal degradation in human cells

Behavior of the DPH fluorescence probe in membranes perturbed by drugs

Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions

Vertical stratification of bacteria and archaea in sediments of a small boreal humic lake

Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks

Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression

SCIP: a single-cell image processor toolbox

Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling

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