Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2020
  2. Published

    Covalent immobilization of luminescent oxygen indicators reduces cytotoxicity

    Välimäki, H., Hyvärinen, T., Leivo, J., Iftikhar, H., Pekkanen-Mattila, M., Rajan, D. K., Verho, J., Kreutzer, J., Ryynänen, T., Pirhonen, J., Aalto-Setälä, K., Kallio, P., Narkilahti, S. & Lekkala, J., 1 Jun 2020, In : BIOMEDICAL MICRODEVICES. 22, 2, 41.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Paclitaxel, carboplatin and 1,25-D3 inhibit proliferation of ovarian cancer cells in vitro

    Kuittinen, T., Rovio, P., Luukkaala, T., Laurila, M., Grénman, S., Kallioniemi, A. & Mäenpää, J., 1 Jun 2020, In : Anticancer Research. 40, 6, p. 3129-3138 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    All-Optical Electrophysiology Refines Populations of In Silico Human iPSC-CMs for Drug Evaluation

    Paci, M., Passini, E., Klimas, A., Severi, S., Hyttinen, J., Rodriguez, B. & Entcheva, E., 19 May 2020, In : Biophysical Journal. 118, 10, p. 2596-2611 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup

    Palma, C. S. D., Kandavalli, V., Bahrudeen, M. N. M., Minoia, M., Chauhan, V., Dash, S. & Ribeiro, A. S., 1 May 2020, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1863, 5, 194515.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    High-content imaging and structure-based predictions reveal functional differences between Niemann-Pick C1 variants

    Vanharanta, L., Peränen, J., Pfisterer, S. G., Enkavi, G., Vattulainen, I. & Ikonen, E., 1 May 2020, In : Traffic. 21, 5, p. 386-397 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Salivary cortisol reactivity to psychological stressors in infancy: A meta-analysis

    Puhakka, I. J. A. & Peltola, M. J., 1 May 2020, In : PSYCHONEUROENDOCRINOLOGY. 115, 104603.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  8. Published

    Utilizing Gelatinized Starchy Waste from Rice Noodle Factory as Substrate for L(+)-Lactic Acid Production by Amylolytic Lactic Acid Bacterium Enterococcus faecium K-1

    Unban, K., Khanongnuch, R., Kanpiengjai, A., Shetty, K. & Khanongnuch, C., May 2020, In : Applied Biochemistry and Biotechnology.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Evaluation of scaffold microstructure and comparison of cell seeding methods using micro-computed tomography-based tools

    Palmroth, A., Pitkänen, S., Hannula, M., Paakinaho, K., Hyttinen, J., Miettinen, S. & Kellomäki, M., 1 Apr 2020, In : Journal of the Royal Society. Interface. 17, 165, 12 p., 20200102.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Mixed carbon substrates: a necessary nuisance or a missed opportunity?

    Liu, N., Santala, S. & Stephanopoulos, G., 1 Apr 2020, In : CURRENT OPINION IN BIOTECHNOLOGY. 62, p. 15-21 7 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  11. Published

    The effect of start-up on energy recovery and compositional changes in brewery wastewater in bioelectrochemical systems

    Haavisto, J. M., Kokko, M. E., Lakaniemi, A. M., Sulonen, M. L. K. & Puhakka, J. A., 1 Apr 2020, In : BIOELECTROCHEMISTRY. 132, 8 p., 107402.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Utilizing Neurons for Digital Logic Circuits: A Molecular Communications Analysis

    Adonias, G. L., Yastrebova, A., Barros, M. T., Koucheryavy, Y., Cleary, F. & Balasubramaniam, S., 1 Apr 2020, In : IEEE Transactions on Nanobioscience. 19, 2, p. 224-236 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Sequential Collinear Photofragmentation and Atomic Absorption Spectroscopy for Online Laser Monitoring of Triatomic Metal Species

    Viljanen, J., Kalmankoski, K., Contreras, V., Sarin, J. K., Sorvajärvi, T., Kinnunen, H., Enestam, S. & Toivonen, J., 18 Jan 2020, In : Sensors (Basel, Switzerland). 20, 2, 14 p., 533.

    Research output: Contribution to journalArticleScientificpeer-review

  14. E-pub ahead of print

    A concise synthesis of carbasugars isolated from Streptomyces lincolnensis

    Holmstedt, S. & Candeias, N. R., 2020, In : Tetrahedron. 131346.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Co-culture of human induced pluripotent stem cell-derived retinal pigment epithelial cells and endothelial cells on double collagen-coated honeycomb films

    Rebelo Calejo, T., Vuorenpää, H., Vuorimaa-Laukkanen, E., Kallio, P., Aalto-Setälä, K., Miettinen, S., Skottman, H., Kellomäki, M. & Juuti-Uusitalo, K., 2020, In : Acta Biomaterialia. 101, p. 327-343 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. E-pub ahead of print

    Membrane-Dependent Binding and Entry Mechanism of Dopamine into Its Receptor

    Lolicato, F., Juhola, H., Zak, A., Postila, P. A., Saukko, A., Rissanen, S., Enkavi, G., Vattulainen, I., Kepczynski, M. & Róg, T., 2020, In : ACS Chemical Neuroscience.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Multiphoton microscopy of the dermoepidermal junction and automated identification of dysplastic tissues with deep learning

    Huttunen, M. J., Hristu, R., Dumitru, A., Floroiu, I., Costache, M. & Stanciu, S. G., 2020, In : Biomedical Optics Express. 11, 1, p. 186-199 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Pulmonary Surfactant Lipid Reorganization Induced by the Adsorption of the Oligomeric Surfactant Protein B Complex

    Liekkinen, J., Enkavi, G., Javanainen, M., Olmeda, B., Pérez-Gil, J. & Vattulainen, I., 2020, In : JOURNAL OF MOLECULAR BIOLOGY. 432, 10, p. 3251-3268 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Surface Stabilization and Dissolution Rate Improvement of Amorphous Compacts with Thin Polymer Coatings: Can We Have It All?

    Novakovic, D., Peltonen, L., Isomäki, A., Fraser-Miller, S. J., Nielsen, L. H., Laaksonen, T. & Strachan, C. J., 2020, In : Molecular Pharmaceutics. 17, 4, p. 1248-1260 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    The Na,K-ATPase acts upstream of phosphoinositide PI(4,5)P2 facilitating unconventional secretion of Fibroblast Growth Factor 2

    Legrand, C., Saleppico, R., Sticht, J., Lolicato, F., Müller, H. M., Wegehingel, S., Dimou, E., Steringer, J. P., Ewers, H., Vattulainen, I., Freund, C. & Nickel, W., 2020, In : Communications biology. 3, 1, 16 p., 141.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Tidal breathing flow profiles during sleep in wheezing children measured by impedance pneumography

    Gracia-Tabuenca, J., Seppä, V-P., Jauhiainen, M., Paassilta, M., Viik, J. & Karjalainen, J., 2020, In : Respiratory Physiology and Neurobiology. 271, 103312.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Toward Rigorous Materials Production: New Approach Methodologies Have Extensive Potential to Improve Current Safety Assessment Practices

    Nymark, P., Bakker, M., Dekkers, S., Franken, R., Fransman, W., García-Bilbao, A., Greco, D., Gulumian, M., Hadrup, N., Halappanavar, S., Hongisto, V., Hougaard, K. S., Jensen, K. A., Kohonen, P., Koivisto, A. J., Dal Maso, M., Oosterwijk, T., Poikkimäki, M., Rodriguez-Llopis, I., Stierum, R., Sørli, J. B. & Grafström, R., 2020, In : Small. 16, 6, 13 p., 1904749.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  23. 2019
  24. Published

    Enhanced Population Control in a Synthetic Bacterial Consortium by Interconnected Carbon Cross-Feeding

    Losoi, P. S., Santala, V. P. & Santala, S. M., 20 Dec 2019, In : ACS Synthetic Biology. 8, 12, p. 2642-2650 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Data-driven multiscale modeling reveals the role of metabolic coupling for the spatio-temporal growth dynamics of yeast colonies

    Intosalmi, J., Scott, A. C., Hays, M., Flann, N., Yli-Harja, O., Lähdesmäki, H., Dudley, A. M. & Skupin, A., 19 Dec 2019, In : BMC Molecular and Cell Biology. 20, 1, 13 p., 59.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Ensuring Quality Standards and Reproducible Research for Data Analysis Services in Oncology: A Cooperative Service Model

    Emmert-Streib, F., Dehmer, M. & Yli-Harja, O., 17 Dec 2019, In : Frontiers in cell and developmental biology. 7, 349.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Environmental monitoring with distributed mesh networks: An overview and practical implementation perspective for urban scenario

    Ometov, A., Bezzateev, S., Voloshina, N., Masek, P. & Komarov, M., 2 Dec 2019, In : Sensors (Switzerland). 19, 24, 19 p., 5548.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Key drivers of cloud response to surface-active organics

    Lowe, S. J., Partridge, D. G., Davies, J. F., Wilson, K. R., Topping, D. & Riipinen, I., 1 Dec 2019, In : Nature Communications. 10, 1, 12 p., 5214.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Programmable responsive hydrogels inspired by classical conditioning algorithm

    Zhang, H., Zeng, H., Priimägi, A. & Ikkala, O., 1 Dec 2019, In : Nature Communications. 10, 1, 3267.

    Research output: Contribution to journalArticleScientificpeer-review

  30. The role of highly oxygenated organic molecules in the Boreal aerosol-cloud-climate system

    Roldin, P., Ehn, M., Kurtén, T., Olenius, T., Rissanen, M. P., Sarnela, N., Elm, J., Rantala, P., Hao, L., Hyttinen, N., Heikkinen, L., Worsnop, D. R., Pichelstorfer, L., Xavier, C., Clusius, P., Öström, E., Petäjä, T., Kulmala, M., Vehkamäki, H., Virtanen, A., Riipinen, I. & Boy, M., 1 Dec 2019, In : Nature Communications. 10, 1, 4370.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Transcription closed and open complex formation coordinate expression of genes with a shared promoter region

    Häkkinen, A., Oliveira, S. M. D., Neeli-Venkata, R. & Ribeiro, A. S., 1 Dec 2019, In : Journal of the Royal Society Interface. 16, 161, 11 p., 20190507.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Spectral object recognition in hyperspectral holography with complex-domain denoising

    Shevkunov, I., Katkovnik, V., Claus, D., Pedrini, G., Petrov, N. V. & Egiazarian, K., 26 Nov 2019, In : Sensors (Switzerland). 19, 23, 10 p., 5188.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Phosphorylation of NFATC1 at PIM1 target sites is essential for its ability to promote prostate cancer cell migration and invasion

    Eerola, S. K., Santio, N. M., Rinne, S., Kouvonen, P., Corthals, G. L., Scaravilli, M., Scala, G., Serra, A., Greco, D., Ruusuvuori, P., Latonen, L., Rainio, E. M., Visakorpi, T. & Koskinen, P. J., 15 Nov 2019, In : CELL COMMUNICATION AND SIGNALING. 17, 1, 148.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Statistical evaluation of barkhausen noise testing (BNT) for ground samples

    Tomkowski, R., Sorsa, A., Santa-Aho, S., Lundin, P. & Vippola, M., 1 Nov 2019, In : Sensors (Switzerland). 19, 21, 4716.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry

    Bahrudeen, M. N. M., Chauhan, V., Palma, C. S. D., Oliveira, S. M. D., Kandavalli, V. K. & Ribeiro, A. S., 22 Oct 2019, In : Journal of Microbiological Methods. 166, 105745.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Improved water services cooperation through clarification of rules and roles

    Inha, L. M., Katko, T. S. & Rajala, R. P., 19 Oct 2019, In : Water (Switzerland). 11, 10, 2172.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Effects of elevated pressures on the activity of acidophilic bioleaching microorganisms

    Hajdu-Rahkama, R., Ahoranta, S., Lakaniemi, A-M. & Puhakka, J. A., 15 Oct 2019, In : Biochemical Engineering Journal. 150, 107286.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Controlled Orientations of Neighboring Tetracene Units by Mixed Self-Assembled Monolayers on Gold Nanoclusters for High-Yield and Long-Lived Triplet Excited States through Singlet Fission

    Saegusa, T., Sakai, H., Nagashima, H., Kobori, Y., Tkachenko, N. V. & Hasobe, T., 18 Sep 2019, In : Journal of the American Chemical Society. 141, 37, p. 14720-14727 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  39. E-pub ahead of print

    Effects of nanofibrillated cellulose hydrogels on adipose tissue extract and hepatocellular carcinoma cell spheroids in freeze-drying

    Auvinen, V-V., Merivaara, A., Kiiskinen, J., Paukkonen, H., Laurén, P., Hakkarainen, T., Koivuniemi, R., Sarkanen, R., Ylikomi, T., Laaksonen, T. & Yliperttula, M., 15 Sep 2019, In : Cryobiology.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    An efficient auxin-inducible degron system with low basal degradation in human cells

    Li, S., Prasanna, X., Salo, V. T., Vattulainen, I. & Ikonen, E., 1 Sep 2019, In : Nature Methods. 16, 9, p. 866-869 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Behavior of the DPH fluorescence probe in membranes perturbed by drugs

    Poojari, C., Wilkosz, N., Lira, R. B., Dimova, R., Jurkiewicz, P., Petka, R., Kepczynski, M. & Róg, T., 1 Sep 2019, In : Chemistry and Physics of Lipids. 223, 104784.

    Research output: Contribution to journalArticleScientificpeer-review

  42. E-pub ahead of print

    Pneumatic unidirectional cell stretching device for mechanobiological studies of cardiomyocytes

    Kreutzer, J., Viehrig, M., Pölönen, R. P., Zhao, F., Ojala, M., Aalto-Setälä, K. & Kallio, P., 23 Aug 2019, In : BIOMECHANICS AND MODELING IN MECHANOBIOLOGY.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Influence of ions to modulate hydrazone and oxime reaction kinetics to obtain dynamically cross-linked hyaluronic acid hydrogels

    Wang, S., Nawale, G. N., Oommen, O. P., Hilborn, J. & Varghese, O. P., 21 Aug 2019, In : Polymer Chemistry. 10, 31, p. 4322-4327 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Sodium channels enable fast electrical signaling and regulate phagocytosis in the retinal pigment epithelium

    Johansson, J. K., Karema-Jokinen, V. I., Hakanen, S., Jylhä, A., Uusitalo, H., Vihinen-Ranta, M., Skottman, H., Ihalainen, T. O. & Nymark, S., 15 Aug 2019, In : BMC BIOLOGY. 17, 1, 63.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Characterisation and in vitro and in vivo evaluation of supercritical-CO2-foamed β-TCP/PLCL composites for bone applications

    Pitkänen, S., Paakinaho, K., Pihlman, H., Ahola, N., Hannula, M., Asikainen, S., Manninen, M., Morelius, M., Keränen, P., Hyttinen, J., Kellomäki, M., Laitinen-Vapaavuori, O. & Miettinen, S., 5 Aug 2019, In : European cells & materials. 38, p. 35-50 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Alkane and wax ester production from lignin-related aromatic compounds

    Salmela, M., Lehtinen, T., Efimova, E., Santala, S. & Santala, V., 1 Aug 2019, In : Biotechnology and Bioengineering. 116, 8, p. 1934-1945 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Comparing deep belief networks with support vector machines for classifying gene expression data from complex disorders

    Smolander, J., Dehmer, M. & Emmert-Streib, F., 1 Jul 2019, In : FEBS Open Bio. 9, 7, p. 1232-1248 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    An architectural understanding of natural sway frequencies in trees

    Jackson, T., Shenkin, A., Moore, J., Bunce, A., van Emmerik, T., Kane, B., Burcham, D., James, K., Selker, J., Calders, K., Origo, N., Disney, M., Burt, A., Wilkes, P., Raumonen, P., Gonzalez de Tanago Menaca, J., Lau, A., Herold, M., Goodman, R. C., Fourcaud, T. & Malhi, Y., 28 Jun 2019, In : Journal of the Royal Society. Interface. 16, 155, 1 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Synthetic Design of Asymmetric miRNA with an Engineered 3′ Overhang to Improve Strand Selection

    Kadekar, S., Nawale, G. N., Karlsson, K., Ålander, C., Oommen, O. P. & Varghese, O. P., 7 Jun 2019, In : Molecular Therapy - Nucleic Acids. 16, p. 597-604 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    The Role of Temperature and Lipid Charge on Intake/Uptake of Cationic Gold Nanoparticles into Lipid Bilayers

    Lolicato, F., Joly, L., Martinez-Seara, H., Fragneto, G., Scoppola, E., Baldelli Bombelli, F., Vattulainen, I., Akola, J. & Maccarini, M., 7 Jun 2019, In : Small. 15, 23, 1805046.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    Methods for simultaneous robot-world-hand–eye calibration: A comparative study

    Ali, I., Suominen, O., Gotchev, A. & Morales, E. R., 2 Jun 2019, In : Sensors (Switzerland). 19, 12, 2837.

    Research output: Contribution to journalArticleScientificpeer-review

  52. Published

    Technical Note: Noise models for virtual clinical trials of digital breast tomosynthesis

    Borges, L. R., Barufaldi, B., Caron, R. F., Bakic, P. R., Foi, A., Maidment, A. D. A. & Vieira, M. A. C., 1 Jun 2019, In : Medical Physics. 46, 6, p. 2683-2689 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  53. Published

    Connection of Collimation, Asymmetric Beaming, and Independent Transmission-Reflection Processes in Concentric-Groove Gratings Supporting Spoof Surface Plasmons

    Habib, M., Serebryannikov, A. E., Caglayan, H., Vandenbosch, G. A. E. & Ozbay, E., Jun 2019, In : Plasmonics. 14, 3, p. 721-729 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  54. Published

    Bioimpedance Sensor Array for Long-Term Monitoring of Wound Healing from Beneath the Primary Dressings and Controlled Formation of H2O2 Using Low-Intensity Direct Current

    Kekonen, A., Bergelin, M., Johansson, M., Kumar Joon, N., Bobacka, J. & Viik, J., 31 May 2019, In : Sensors. 19, 11

    Research output: Contribution to journalArticleScientificpeer-review

  55. Published

    Understanding the Role of Lipids in Signaling Through Atomistic and Multiscale Simulations of Cell Membranes

    Manna, M., Nieminen, T. & Vattulainen, I., 6 May 2019, In : ANNUAL REVIEW OF BIOPHYSICS. 48, p. 421-439 19 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  56. Published

    Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions

    Javanainen, M., Enkavi, G., Guixà-Gonzaléz, R., Kulig, W., Martinez-Seara, H., Levental, I. & Vattulainen, I., 1 May 2019, In : PLoS Computational Biology. 15, 5, e1007033.

    Research output: Contribution to journalArticleScientificpeer-review

  57. Published

    Effects of percutaneous transluminal angioplasty of superficial femoral artery on photoplethysmographic pulse transit times

    Peltokangas, M., Suominen, V., Vakhitov, D., Korhonen, J., Verho, J., Mattila, V. M., Romsi, P., Lekkala, J., Vehkaoja, A. & Oksala, N., May 2019, In : IEEE Journal of Biomedical and Health Informatics. 23, 3, p. 1058-1065

    Research output: Contribution to journalArticleScientificpeer-review

  58. Published

    Alpha radiation-induced luminescence by am-241 in aqueous nitric acid solution

    Kerst, T., Malmbeck, R., lal Banik, N. L. & Toivonen, J., 1 Apr 2019, In : Sensors (Switzerland). 19, 7, 1602.

    Research output: Contribution to journalArticleScientificpeer-review

  59. Published

    Positioning information privacy in intelligent transportation systems: An overview and future perspective

    Ometov, A., Bezzateev, S., Davydov, V., Shchesniak, A., Masek, P., Lohan, E. S. & Koucheryavy, Y., 1 Apr 2019, In : Sensors. 19, 7, 1603.

    Research output: Contribution to journalArticleScientificpeer-review

  60. Published

    Deep Learning in Image Cytometry: A Review

    Gupta, A., Harrison, P. J., Wieslander, H., Pielawski, N., Kartasalo, K., Partel, G., Solorzano, L., Suveer, A., Klemm, A. H., Spjuth, O., Sintorn, I. M. & Wählby, C., Apr 2019, In : Cytometry Part A. 95, 4, p. 366-380

    Research output: Contribution to journalReview ArticleScientificpeer-review

  61. Published

    Synthetic metabolic pathway for the production of 1-alkenes from lignin-derived molecules

    Luo, J., Lehtinen, T., Efimova, E., Santala, V. & Santala, S., 11 Mar 2019, In : Microbial Cell Factories. 18, 1, 13 p., 48.

    Research output: Contribution to journalArticleScientificpeer-review

  62. Published

    Vertical stratification of bacteria and archaea in sediments of a small boreal humic lake

    Rissanen, A. J., Peura, S., Mpamah, P. A., Taipale, S., Tiirola, M., Biasi, C., Mäki, A. & Nykänen, H., 1 Mar 2019, In : FEMS Microbiology Letters. 366, 5

    Research output: Contribution to journalArticleScientificpeer-review

  63. Published

    Metabolic syndrome is associated with decreased heart rate variability in a sex-dependent manner: a comparison between 252 men and 249 women

    Kangas, P., Tikkakoski, A., Uitto, M., Viik, J., Bouquin, H., Niemelä, O., Mustonen, J. & Pörsti, I., Mar 2019, In : Clinical Physiology and Functional Imaging. 39, 2, p. 160-167 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  64. Published

    Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks

    Liimatainen, K., Kananen, L., Latonen, L. & Ruusuvuori, P., 15 Feb 2019, In : BMC Bioinformatics. 20, 1, 80.

    Research output: Contribution to journalArticleScientificpeer-review

  65. Published

    Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression

    Startceva, S., Kandavalli, V. K., Visa, A. & Ribeiro, A. S., 1 Feb 2019, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1862, 2, p. 119-128 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  66. Published

    Detection of Pancreatic Cancer by Urine Volatile Organic Compound Analysis

    Nissinen, S. I., Roine, A., Hokkinen, L., Karjalainen, M., Venäläinen, M., Helminen, H., Niemi, R., Lehtimäki, T., Rantanen, T. & Oksala, N., Jan 2019, In : Anticancer Research. 39, 1, p. 73-79 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  67. Published

    Advances in Human Stem Cell-Derived Neuronal Cell Culturing and Analysis

    Ylä-Outinen, L., Tanskanen, J. M. A., Kapucu, F. E., Hyysalo, A., Hyttinen, J. A. K. & Narkilahti, S., 2019, In Vitro Neuronal Networks: From Culturing Methods to Neuro-Technological Applications. Springer New York LLC, p. 299-329 31 p. (Advances in Neurobiology; vol. 22).

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  68. Published

    Bioactive glass-ceramics: From macro to nano

    Massera, J., 2019, Nanostructured Biomaterials for Regenerative Medicine. Woodhead Publishing, p. 275-292 18 p.

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  69. E-pub ahead of print

    Disease modeling of a mutation in α-actinin 2 guides clinical therapy in hypertrophic cardiomyopathy

    Prondzynski, M., Lemoine, M. D., Zech, A. T. L., Horváth, A., Di Mauro, V., Koivumäki, J. T., Kresin, N., Busch, J., Krause, T., Krämer, E., Schlossarek, S., Spohn, M., Friedrich, F. W., Münch, J., Laufer, S. D., Redwood, C., Volk, A. E., Hansen, A., Mearini, G., Catalucci, D., Meyer, C., Christ, T., Patten, M., Eschenhagen, T. & Carrier, L., 2019, In : EMBO Molecular Medicine. e11115.

    Research output: Contribution to journalArticleScientificpeer-review

  70. E-pub ahead of print

    Do bone geometric properties of the proximal femoral diaphysis reflect loading history, muscle properties, or body dimensions?

    Niinimäki, S., Narra, N., Härkönen, L., Abe, S., Nikander, R., Hyttinen, J., Knüsel, C. J. & Sievänen, H., 2019, In : American Journal of Human Biology. e23246.

    Research output: Contribution to journalArticleScientificpeer-review

  71. Published

    L1000 viewer: A search engine and Web interface for the LINCS data repository

    Musa, A., Tripathi, S., Dehmer, M. & Emmert-Streib, F., 2019, In : Frontiers in Genetics. 10, JUN, 557.

    Research output: Contribution to journalArticleScientificpeer-review

  72. E-pub ahead of print

    Mechanical impact stimulation platform tailored for high-resolution light microscopy

    Halonen, H. T., Hyttinen, J. A. K. & Ihalainen, T. O., 2019, In : HEALTH AND TECHNOLOGY.

    Research output: Contribution to journalArticleScientificpeer-review

  73. Published

    Metabolic profiling of water-soluble compounds from the extracts of dark septate endophytic fungi (DSE) isolated from scots pine (Pinus sylvestris L.) seedlings using UPLC–orbitrap–MS

    Tienaho, J., Karonen, M., Muilu–Mäkelä, R., Wähälä, K., Denegri, E. L., Franzén, R., Karp, M., Santala, V. & Sarjala, T., 2019, In : Molecules. 24, 12, 2330.

    Research output: Contribution to journalArticleScientificpeer-review

  74. Published

    Optical wireless cochlear implants

    Trevlakis, S. E., Boulogeorgos, A. A. A., Sofotasios, P. C., Muhaidat, S. & Karagiannidis, G. K., 2019, In : Biomedical Optics Express. 10, 2, p. 707-730 24 p.

    Research output: Contribution to journalArticleScientificpeer-review

  75. Published

    O2-requiring molecular reporters of gene expression for anaerobic microorganisms

    Guglielmetti, S., Santala, V., Mangayil, R., Ciranna, A. & Karp, M. T., 2019, In : Biosensors and Bioelectronics. 123, p. 1-6 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  76. Published

    Prostate cancer gene regulatory network inferred from RNA-seq data

    Moore, D., Simoes, R. D. M., Dehmer, M. & Emmert-Streib, F., 2019, In : CURRENT GENOMICS. 20, 1, p. 38-48 11 p.

    Research output: Contribution to journalArticleScientificpeer-review

  77. Published

    Proteome-transcriptome alignment of molecular portraits achieved by self-contained gene set analysis: Consensus colon cancer subtypes case study

    Glazko, G., Zybailov, B., Emmert-Streib, F., Baranova, A. & Rahmatallah, Y., 2019, In : PLoS ONE. 14, 8, e0221444.

    Research output: Contribution to journalArticleScientificpeer-review

  78. Accepted/In press

    Quality and Capacity Analysis of Molecular Communications in Bacterial Synthetic Logic Circuits

    Martins, D. P., Barros, M. T. & Balasubramaniam, S., 2019, (Accepted/In press) In : IEEE Transactions on Nanobioscience.

    Research output: Contribution to journalArticleScientificpeer-review

  79. E-pub ahead of print

    Recurrent moderate-risk mutations in Finnish breast and ovarian cancer patients

    Nurmi, A., Muranen, T. A., Pelttari, L. M., Kiiski, J. I., Heikkinen, T., Lehto, S., Kallioniemi, A., Schleutker, J., Bützow, R., Blomqvist, C., Aittomäki, K. & Nevanlinna, H., 2019, In : International Journal of Cancer.

    Research output: Contribution to journalArticleScientificpeer-review

  80. Published

    Robocasting of Bioactive SiO2-P2O5-CaO-MgO-Na2O-K2O Glass Scaffolds

    Baino, F., Barberi, J., Fiume, E., Orlygsson, G., Massera, J. & Verné, E., 2019, In : Journal of Healthcare Engineering. 2019, 5153136.

    Research output: Contribution to journalArticleScientificpeer-review

  81. Published

    Synthesis of 6,12-disubstituted methanodibenzo[b,f ][1,5]dioxocins: Pyrrolidine catalyzed self-condensation of 2′-Hydroxyacetophenones

    Assoah, B., Riihonen, V., Vale, J. R., Valkonen, A. & Candeias, N. R., 2019, In : Molecules. 24, 13, 2405.

    Research output: Contribution to journalArticleScientificpeer-review

  82. 2018
  83. Published

    SCIP: a single-cell image processor toolbox

    Martins, L., Neeli-Venkata, R., Oliveira, S. M. D., Häkkinen, A., Ribeiro, A. S. & Fonseca, J. M., 15 Dec 2018, In : Bioinformatics. 34, 24, p. 4318-4320 3 p.

    Research output: Contribution to journalArticleScientificpeer-review

  84. Published

    Beaming random lasers with soliton control

    Perumbilavil, S., Piccardi, A., Barboza, R., Buchnev, O., Kauranen, M., Strangi, G. & Assanto, G., 1 Dec 2018, In : Nature Communications. 9, 1, 7 p., 3863.

    Research output: Contribution to journalArticleScientificpeer-review

  85. Published

    Dynamic decoupling of biomass and wax ester biosynthesis in Acinetobacter baylyi by an autonomously regulated switch

    Santala, S., Efimova, E. & Santala, V., 1 Dec 2018, In : Metabolic Engineering Communications. 7, e00078.

    Research output: Contribution to journalArticleScientificpeer-review

  86. Published

    Machine learning plastic deformation of crystals

    Salmenjoki, H., Alava, M. J. & Laurson, L., 1 Dec 2018, In : Nature Communications. 9, 1, 5307.

    Research output: Contribution to journalArticleScientificpeer-review

  87. Published

    Normalization of force to muscle cross-sectional area: A helpful attempt to reduce data scattering in contractility studies?

    Pecha, S., Koivumäki, J., Geelhoed, B., Kempe, R., Berk, E., Engel, A., Reichenspurner, H., Eschenhagen, T., Ravens, U., Kaumann, A. & Christ, T., 1 Dec 2018, In : Acta Physiologica. 224, 4, 4 p., e13202.

    Research output: Contribution to journalEditorialScientificpeer-review

  88. Published

    Structural basis of actin monomer re-charging by cyclase-Associated protein

    Kotila, T., Kogan, K., Enkavi, G., Guo, S., Vattulainen, I., Goode, B. L. & Lappalainen, P., 1 Dec 2018, In : Nature Communications. 9, 1, 1892.

    Research output: Contribution to journalArticleScientificpeer-review

  89. Published

    Bi-directional cell-pericellular matrix interactions direct stem cell fate

    Ferreira, S. A., Motwani, M. S., Faull, P. A., Seymour, A. J., Yu, T. T. L., Enayati, M., Taheem, D. K., Salzlechner, C., Haghighi, T., Kania, E. M., Oommen, O. P., Ahmed, T., Loaiza, S., Parzych, K., Dazzi, F., Varghese, O. P., Festy, F., Grigoriadis, A. E., Auner, H. W., Snijders, A. P., Bozec, L. & Gentleman, E., Dec 2018, In : Nature Communications. 9, 1, 12 p., 4049.

    Research output: Contribution to journalArticleScientificpeer-review

  90. Published

    The importance of controlled mismatch of biomechanical compliances of implantable scaffolds and native tissue for articular cartilage regeneration

    Gasik, M., Zühlke, A., Haaparanta, A-M., Muhonen, V., Laine, K., Bilotsky, Y., Kellomäki, M. & Kiviranta, I., 30 Nov 2018, In : Frontiers in Bioengineering and Biotechnology. 6, NOV, 187.

    Research output: Contribution to journalArticleScientificpeer-review

  91. Published

    Machine learning analysis of extreme events in optical fibre modulation instability

    Närhi, M., Salmela, L., Toivonen, J., Billet, C., Dudley, J. M. & Genty, G., 22 Nov 2018, In : Nature Communications. 9, 1, 1 p.

    Research output: Contribution to journalArticleScientificpeer-review

  92. Published

    M2M Communication Assessment in Energy-Harvesting and Wake-Up Radio Assisted Scenarios Using Practical Components

    Rinne, J., Keskinen, J., Berger, P. R., Lupo, D. & Valkama, M., 16 Nov 2018, In : Sensors (Basel, Switzerland). 18, 11

    Research output: Contribution to journalArticleScientificpeer-review

  93. Published

    Molecular-Scale Ligand Effects in Small Gold-Thiolate Nanoclusters

    Chevrier, D. M., Raich, L., Rovira, C., Das, A., Luo, Z., Yao, Q., Chatt, A., Xie, J., Jin, R., Akola, J. & Zhang, P., 14 Nov 2018, In : Journal of the American Chemical Society. 140, 45, p. 15430-15436 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

  94. Published

    Understanding Dissolution and Crystallization with Imaging: A Surface Point of View

    Novakovic, D., Isomäki, A., Pleunis, B., Fraser-Miller, S. J., Peltonen, L., Laaksonen, T. & Strachan, C. J., 5 Nov 2018, In : Molecular Pharmaceutics. 15, 11, p. 5361-5373 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  95. Published

    Super-resolution microscopy for biological specimens: Lensless phase retrieval in noisy conditions

    Shevkunov, I., Katkovnik, V., Petrov, N. V. & Egiazarian, K., 1 Nov 2018, In : Biomedical Optics Express. 9, 11, p. 5511-5523 13 p., #340805.

    Research output: Contribution to journalArticleScientificpeer-review

  96. Published

    How to minimize dye-induced perturbations while studying biomembrane structure and dynamics: PEG linkers as a rational alternative

    Mobarak, E., Javanainen, M., Kulig, W., Honigmann, A., Sezgin, E., Aho, N., Eggeling, C., Rog, T. & Vattulainen, I., Nov 2018, In : Biochimica et Biophysica Acta - Biomembranes. 1860, 11, p. 2436-2445

    Research output: Contribution to journalArticleScientificpeer-review

  97. Published

    Alzheimer's disease and alpha-synuclein pathology in the olfactory bulbs of infants, children, teens and adults ≤ 40 years in Metropolitan Mexico City. APOE4 carriers at higher risk of suicide accelerate their olfactory bulb pathology

    Calderón-Garcidueñas, L., González-Maciel, A., Reynoso-Robles, R., Kulesza, R. J., Mukherjee, P. S., Torres-Jardón, R., Rönkkö, T. & Doty, R. L., 1 Oct 2018, In : Environmental Research. 166, p. 348-362 15 p.

    Research output: Contribution to journalArticleScientificpeer-review

  98. Published

    Novel osteoconductive β-tricalcium phosphate/poly(L-lactide-co-e-caprolactone) scaffold for bone regeneration: a study in a rabbit calvarial defect

    Pihlman, H., Keränen, P., Paakinaho, K., Linden, J., Hannula, M., Manninen, I. K., Hyttinen, J., Manninen, M. & Laitinen-Vapaavuori, O., 1 Oct 2018, In : Journal of Materials Science: Materials in Medicine. 29, 10, 156.

    Research output: Contribution to journalArticleScientificpeer-review

  99. Published

    Molecular Communications Pulse-based Jamming Model for Bacterial Biofilm Suppression

    Martins, D. P., Leetanasaksakul, K., Barros, M. T., Thamchaipenet, A., Donnelly, W. & Balasubramaniam, S., Oct 2018, In : IEEE Transactions on Nanobioscience. 17, 4, p. 533-542 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  100. Published

    Quantifying branch architecture of tropical trees using terrestrial LiDAR and 3D modelling

    Lau, A., Bentley, L. P., Martius, C., Shenkin, A., Bartholomeus, H., Raumonen, P., Malhi, Y., Jackson, T. & Herold, M., Oct 2018, In : Trees - Structure and Function. 32, 5, p. 1219-1231 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  101. Published

    Temperature control as key factor for optimal biohydrogen production from thermomechanical pulping wastewater

    Dessì, P., Porca, E., Lakaniemi, A-M., Collins, G. & Lens, P. N. L., 15 Sep 2018, In : Biochemical Engineering Journal. 137, p. 214-221 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  102. Published

    Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling

    Pantsar, T., Rissanen, S., Dauch, D., Laitinen, T., Vattulainen, I. & Poso, A., 10 Sep 2018, In : PLoS Computational Biology. 14, 9, e1006458.

    Research output: Contribution to journalArticleScientificpeer-review

  103. Published

    Computational modeling of electrophysiology and pharmacotherapy of atrial fibrillation: Recent advances and future challenges

    Vagos, M. R. S. S., van Herck, I. G. M., Sundnes, J., Arevalo, H. J., Edwards, A. G. & Koivumäki, J. T., 4 Sep 2018, In : Frontiers in Physiology. 9, SEP, 1221.

    Research output: Contribution to journalReview ArticleScientificpeer-review

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