Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2020
  2. Published

    Covalent immobilization of luminescent oxygen indicators reduces cytotoxicity

    Välimäki, H., Hyvärinen, T., Leivo, J., Iftikhar, H., Pekkanen-Mattila, M., Rajan, D. K., Verho, J., Kreutzer, J., Ryynänen, T., Pirhonen, J., Aalto-Setälä, K., Kallio, P., Narkilahti, S. & Lekkala, J., 1 Jun 2020, In : BIOMEDICAL MICRODEVICES. 22, 2, 41.

    Research output: Contribution to journalArticleScientificpeer-review

  3. Published

    Paclitaxel, carboplatin and 1,25-D3 inhibit proliferation of ovarian cancer cells in vitro

    Kuittinen, T., Rovio, P., Luukkaala, T., Laurila, M., Grénman, S., Kallioniemi, A. & Mäenpää, J., 1 Jun 2020, In : Anticancer Research. 40, 6, p. 3129-3138 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  4. Published

    All-Optical Electrophysiology Refines Populations of In Silico Human iPSC-CMs for Drug Evaluation

    Paci, M., Passini, E., Klimas, A., Severi, S., Hyttinen, J., Rodriguez, B. & Entcheva, E., 19 May 2020, In : Biophysical Journal. 118, 10, p. 2596-2611 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup

    Palma, C. S. D., Kandavalli, V., Bahrudeen, M. N. M., Minoia, M., Chauhan, V., Dash, S. & Ribeiro, A. S., 1 May 2020, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1863, 5, 194515.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    High-content imaging and structure-based predictions reveal functional differences between Niemann-Pick C1 variants

    Vanharanta, L., Peränen, J., Pfisterer, S. G., Enkavi, G., Vattulainen, I. & Ikonen, E., 1 May 2020, In : Traffic. 21, 5, p. 386-397 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Salivary cortisol reactivity to psychological stressors in infancy: A meta-analysis

    Puhakka, I. J. A. & Peltola, M. J., 1 May 2020, In : PSYCHONEUROENDOCRINOLOGY. 115, 104603.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  8. Published

    Utilizing Gelatinized Starchy Waste from Rice Noodle Factory as Substrate for L(+)-Lactic Acid Production by Amylolytic Lactic Acid Bacterium Enterococcus faecium K-1

    Unban, K., Khanongnuch, R., Kanpiengjai, A., Shetty, K. & Khanongnuch, C., May 2020, In : Applied Biochemistry and Biotechnology.

    Research output: Contribution to journalArticleScientificpeer-review

  9. Published

    Evaluation of scaffold microstructure and comparison of cell seeding methods using micro-computed tomography-based tools

    Palmroth, A., Pitkänen, S., Hannula, M., Paakinaho, K., Hyttinen, J., Miettinen, S. & Kellomäki, M., 1 Apr 2020, In : Journal of the Royal Society. Interface. 17, 165, 12 p., 20200102.

    Research output: Contribution to journalArticleScientificpeer-review

  10. Published

    Mixed carbon substrates: a necessary nuisance or a missed opportunity?

    Liu, N., Santala, S. & Stephanopoulos, G., 1 Apr 2020, In : CURRENT OPINION IN BIOTECHNOLOGY. 62, p. 15-21 7 p.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  11. Published

    The effect of start-up on energy recovery and compositional changes in brewery wastewater in bioelectrochemical systems

    Haavisto, J. M., Kokko, M. E., Lakaniemi, A. M., Sulonen, M. L. K. & Puhakka, J. A., 1 Apr 2020, In : BIOELECTROCHEMISTRY. 132, 8 p., 107402.

    Research output: Contribution to journalArticleScientificpeer-review

  12. Published

    Utilizing Neurons for Digital Logic Circuits: A Molecular Communications Analysis

    Adonias, G. L., Yastrebova, A., Barros, M. T., Koucheryavy, Y., Cleary, F. & Balasubramaniam, S., 1 Apr 2020, In : IEEE Transactions on Nanobioscience. 19, 2, p. 224-236 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  13. Published

    Sequential Collinear Photofragmentation and Atomic Absorption Spectroscopy for Online Laser Monitoring of Triatomic Metal Species

    Viljanen, J., Kalmankoski, K., Contreras, V., Sarin, J. K., Sorvajärvi, T., Kinnunen, H., Enestam, S. & Toivonen, J., 18 Jan 2020, In : Sensors (Basel, Switzerland). 20, 2, 14 p., 533.

    Research output: Contribution to journalArticleScientificpeer-review

  14. E-pub ahead of print

    A concise synthesis of carbasugars isolated from Streptomyces lincolnensis

    Holmstedt, S. & Candeias, N. R., 2020, In : Tetrahedron. 131346.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Co-culture of human induced pluripotent stem cell-derived retinal pigment epithelial cells and endothelial cells on double collagen-coated honeycomb films

    Rebelo Calejo, T., Vuorenpää, H., Vuorimaa-Laukkanen, E., Kallio, P., Aalto-Setälä, K., Miettinen, S., Skottman, H., Kellomäki, M. & Juuti-Uusitalo, K., 2020, In : Acta Biomaterialia. 101, p. 327-343 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  16. E-pub ahead of print

    Membrane-Dependent Binding and Entry Mechanism of Dopamine into Its Receptor

    Lolicato, F., Juhola, H., Zak, A., Postila, P. A., Saukko, A., Rissanen, S., Enkavi, G., Vattulainen, I., Kepczynski, M. & Róg, T., 2020, In : ACS Chemical Neuroscience.

    Research output: Contribution to journalArticleScientificpeer-review

  17. Published

    Multiphoton microscopy of the dermoepidermal junction and automated identification of dysplastic tissues with deep learning

    Huttunen, M. J., Hristu, R., Dumitru, A., Floroiu, I., Costache, M. & Stanciu, S. G., 2020, In : Biomedical Optics Express. 11, 1, p. 186-199 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  18. Published

    Pulmonary Surfactant Lipid Reorganization Induced by the Adsorption of the Oligomeric Surfactant Protein B Complex

    Liekkinen, J., Enkavi, G., Javanainen, M., Olmeda, B., Pérez-Gil, J. & Vattulainen, I., 2020, In : JOURNAL OF MOLECULAR BIOLOGY. 432, 10, p. 3251-3268 18 p.

    Research output: Contribution to journalArticleScientificpeer-review

  19. Published

    Surface Stabilization and Dissolution Rate Improvement of Amorphous Compacts with Thin Polymer Coatings: Can We Have It All?

    Novakovic, D., Peltonen, L., Isomäki, A., Fraser-Miller, S. J., Nielsen, L. H., Laaksonen, T. & Strachan, C. J., 2020, In : Molecular Pharmaceutics. 17, 4, p. 1248-1260 13 p.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    The Na,K-ATPase acts upstream of phosphoinositide PI(4,5)P2 facilitating unconventional secretion of Fibroblast Growth Factor 2

    Legrand, C., Saleppico, R., Sticht, J., Lolicato, F., Müller, H. M., Wegehingel, S., Dimou, E., Steringer, J. P., Ewers, H., Vattulainen, I., Freund, C. & Nickel, W., 2020, In : Communications biology. 3, 1, 16 p., 141.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Tidal breathing flow profiles during sleep in wheezing children measured by impedance pneumography

    Gracia-Tabuenca, J., Seppä, V-P., Jauhiainen, M., Paassilta, M., Viik, J. & Karjalainen, J., 2020, In : Respiratory Physiology and Neurobiology. 271, 103312.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Toward Rigorous Materials Production: New Approach Methodologies Have Extensive Potential to Improve Current Safety Assessment Practices

    Nymark, P., Bakker, M., Dekkers, S., Franken, R., Fransman, W., García-Bilbao, A., Greco, D., Gulumian, M., Hadrup, N., Halappanavar, S., Hongisto, V., Hougaard, K. S., Jensen, K. A., Kohonen, P., Koivisto, A. J., Dal Maso, M., Oosterwijk, T., Poikkimäki, M., Rodriguez-Llopis, I., Stierum, R., Sørli, J. B. & Grafström, R., 2020, In : Small. 16, 6, 13 p., 1904749.

    Research output: Contribution to journalReview ArticleScientificpeer-review

  23. 2019
  24. Published

    Enhanced Population Control in a Synthetic Bacterial Consortium by Interconnected Carbon Cross-Feeding

    Losoi, P. S., Santala, V. P. & Santala, S. M., 20 Dec 2019, In : ACS Synthetic Biology. 8, 12, p. 2642-2650 9 p.

    Research output: Contribution to journalArticleScientificpeer-review

  25. Published

    Data-driven multiscale modeling reveals the role of metabolic coupling for the spatio-temporal growth dynamics of yeast colonies

    Intosalmi, J., Scott, A. C., Hays, M., Flann, N., Yli-Harja, O., Lähdesmäki, H., Dudley, A. M. & Skupin, A., 19 Dec 2019, In : BMC Molecular and Cell Biology. 20, 1, 13 p., 59.

    Research output: Contribution to journalArticleScientificpeer-review

  26. Published

    Ensuring Quality Standards and Reproducible Research for Data Analysis Services in Oncology: A Cooperative Service Model

    Emmert-Streib, F., Dehmer, M. & Yli-Harja, O., 17 Dec 2019, In : Frontiers in cell and developmental biology. 7, 349.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Environmental monitoring with distributed mesh networks: An overview and practical implementation perspective for urban scenario

    Ometov, A., Bezzateev, S., Voloshina, N., Masek, P. & Komarov, M., 2 Dec 2019, In : Sensors (Switzerland). 19, 24, 19 p., 5548.

    Research output: Contribution to journalArticleScientificpeer-review

  28. Key drivers of cloud response to surface-active organics

    Lowe, S. J., Partridge, D. G., Davies, J. F., Wilson, K. R., Topping, D. & Riipinen, I., 1 Dec 2019, In : Nature Communications. 10, 1, 12 p., 5214.

    Research output: Contribution to journalArticleScientificpeer-review

  29. Published

    Programmable responsive hydrogels inspired by classical conditioning algorithm

    Zhang, H., Zeng, H., Priimägi, A. & Ikkala, O., 1 Dec 2019, In : Nature Communications. 10, 1, 3267.

    Research output: Contribution to journalArticleScientificpeer-review

  30. The role of highly oxygenated organic molecules in the Boreal aerosol-cloud-climate system

    Roldin, P., Ehn, M., Kurtén, T., Olenius, T., Rissanen, M. P., Sarnela, N., Elm, J., Rantala, P., Hao, L., Hyttinen, N., Heikkinen, L., Worsnop, D. R., Pichelstorfer, L., Xavier, C., Clusius, P., Öström, E., Petäjä, T., Kulmala, M., Vehkamäki, H., Virtanen, A., Riipinen, I. & Boy, M., 1 Dec 2019, In : Nature Communications. 10, 1, 4370.

    Research output: Contribution to journalArticleScientificpeer-review

  31. Published

    Transcription closed and open complex formation coordinate expression of genes with a shared promoter region

    Häkkinen, A., Oliveira, S. M. D., Neeli-Venkata, R. & Ribeiro, A. S., 1 Dec 2019, In : Journal of the Royal Society Interface. 16, 161, 11 p., 20190507.

    Research output: Contribution to journalArticleScientificpeer-review

  32. Published

    Spectral object recognition in hyperspectral holography with complex-domain denoising

    Shevkunov, I., Katkovnik, V., Claus, D., Pedrini, G., Petrov, N. V. & Egiazarian, K., 26 Nov 2019, In : Sensors (Switzerland). 19, 23, 10 p., 5188.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Phosphorylation of NFATC1 at PIM1 target sites is essential for its ability to promote prostate cancer cell migration and invasion

    Eerola, S. K., Santio, N. M., Rinne, S., Kouvonen, P., Corthals, G. L., Scaravilli, M., Scala, G., Serra, A., Greco, D., Ruusuvuori, P., Latonen, L., Rainio, E. M., Visakorpi, T. & Koskinen, P. J., 15 Nov 2019, In : CELL COMMUNICATION AND SIGNALING. 17, 1, 148.

    Research output: Contribution to journalArticleScientificpeer-review

  34. Published

    Statistical evaluation of barkhausen noise testing (BNT) for ground samples

    Tomkowski, R., Sorsa, A., Santa-Aho, S., Lundin, P. & Vippola, M., 1 Nov 2019, In : Sensors (Switzerland). 19, 21, 4716.

    Research output: Contribution to journalArticleScientificpeer-review

  35. Published

    Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry

    Bahrudeen, M. N. M., Chauhan, V., Palma, C. S. D., Oliveira, S. M. D., Kandavalli, V. K. & Ribeiro, A. S., 22 Oct 2019, In : Journal of Microbiological Methods. 166, 105745.

    Research output: Contribution to journalArticleScientificpeer-review

  36. Published

    Improved water services cooperation through clarification of rules and roles

    Inha, L. M., Katko, T. S. & Rajala, R. P., 19 Oct 2019, In : Water (Switzerland). 11, 10, 2172.

    Research output: Contribution to journalArticleScientificpeer-review

  37. Published

    Effects of elevated pressures on the activity of acidophilic bioleaching microorganisms

    Hajdu-Rahkama, R., Ahoranta, S., Lakaniemi, A-M. & Puhakka, J. A., 15 Oct 2019, In : Biochemical Engineering Journal. 150, 107286.

    Research output: Contribution to journalArticleScientificpeer-review

  38. Published

    Controlled Orientations of Neighboring Tetracene Units by Mixed Self-Assembled Monolayers on Gold Nanoclusters for High-Yield and Long-Lived Triplet Excited States through Singlet Fission

    Saegusa, T., Sakai, H., Nagashima, H., Kobori, Y., Tkachenko, N. V. & Hasobe, T., 18 Sep 2019, In : Journal of the American Chemical Society. 141, 37, p. 14720-14727 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  39. E-pub ahead of print

    Effects of nanofibrillated cellulose hydrogels on adipose tissue extract and hepatocellular carcinoma cell spheroids in freeze-drying

    Auvinen, V-V., Merivaara, A., Kiiskinen, J., Paukkonen, H., Laurén, P., Hakkarainen, T., Koivuniemi, R., Sarkanen, R., Ylikomi, T., Laaksonen, T. & Yliperttula, M., 15 Sep 2019, In : Cryobiology.

    Research output: Contribution to journalArticleScientificpeer-review

  40. Published

    An efficient auxin-inducible degron system with low basal degradation in human cells

    Li, S., Prasanna, X., Salo, V. T., Vattulainen, I. & Ikonen, E., 1 Sep 2019, In : Nature Methods. 16, 9, p. 866-869 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  41. Published

    Behavior of the DPH fluorescence probe in membranes perturbed by drugs

    Poojari, C., Wilkosz, N., Lira, R. B., Dimova, R., Jurkiewicz, P., Petka, R., Kepczynski, M. & Róg, T., 1 Sep 2019, In : Chemistry and Physics of Lipids. 223, 104784.

    Research output: Contribution to journalArticleScientificpeer-review

  42. E-pub ahead of print

    Pneumatic unidirectional cell stretching device for mechanobiological studies of cardiomyocytes

    Kreutzer, J., Viehrig, M., Pölönen, R. P., Zhao, F., Ojala, M., Aalto-Setälä, K. & Kallio, P., 23 Aug 2019, In : BIOMECHANICS AND MODELING IN MECHANOBIOLOGY.

    Research output: Contribution to journalArticleScientificpeer-review

  43. Published

    Influence of ions to modulate hydrazone and oxime reaction kinetics to obtain dynamically cross-linked hyaluronic acid hydrogels

    Wang, S., Nawale, G. N., Oommen, O. P., Hilborn, J. & Varghese, O. P., 21 Aug 2019, In : Polymer Chemistry. 10, 31, p. 4322-4327 6 p.

    Research output: Contribution to journalArticleScientificpeer-review

  44. Published

    Sodium channels enable fast electrical signaling and regulate phagocytosis in the retinal pigment epithelium

    Johansson, J. K., Karema-Jokinen, V. I., Hakanen, S., Jylhä, A., Uusitalo, H., Vihinen-Ranta, M., Skottman, H., Ihalainen, T. O. & Nymark, S., 15 Aug 2019, In : BMC BIOLOGY. 17, 1, 63.

    Research output: Contribution to journalArticleScientificpeer-review

  45. Published

    Characterisation and in vitro and in vivo evaluation of supercritical-CO2-foamed β-TCP/PLCL composites for bone applications

    Pitkänen, S., Paakinaho, K., Pihlman, H., Ahola, N., Hannula, M., Asikainen, S., Manninen, M., Morelius, M., Keränen, P., Hyttinen, J., Kellomäki, M., Laitinen-Vapaavuori, O. & Miettinen, S., 5 Aug 2019, In : European cells & materials. 38, p. 35-50 16 p.

    Research output: Contribution to journalArticleScientificpeer-review

  46. Published

    Alkane and wax ester production from lignin-related aromatic compounds

    Salmela, M., Lehtinen, T., Efimova, E., Santala, S. & Santala, V., 1 Aug 2019, In : Biotechnology and Bioengineering. 116, 8, p. 1934-1945 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  47. Published

    Comparing deep belief networks with support vector machines for classifying gene expression data from complex disorders

    Smolander, J., Dehmer, M. & Emmert-Streib, F., 1 Jul 2019, In : FEBS Open Bio. 9, 7, p. 1232-1248 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  48. Published

    An architectural understanding of natural sway frequencies in trees

    Jackson, T., Shenkin, A., Moore, J., Bunce, A., van Emmerik, T., Kane, B., Burcham, D., James, K., Selker, J., Calders, K., Origo, N., Disney, M., Burt, A., Wilkes, P., Raumonen, P., Gonzalez de Tanago Menaca, J., Lau, A., Herold, M., Goodman, R. C., Fourcaud, T. & Malhi, Y., 28 Jun 2019, In : Journal of the Royal Society. Interface. 16, 155, 1 p.

    Research output: Contribution to journalArticleScientificpeer-review

  49. Published

    Synthetic Design of Asymmetric miRNA with an Engineered 3′ Overhang to Improve Strand Selection

    Kadekar, S., Nawale, G. N., Karlsson, K., Ålander, C., Oommen, O. P. & Varghese, O. P., 7 Jun 2019, In : Molecular Therapy - Nucleic Acids. 16, p. 597-604 8 p.

    Research output: Contribution to journalArticleScientificpeer-review

  50. Published

    The Role of Temperature and Lipid Charge on Intake/Uptake of Cationic Gold Nanoparticles into Lipid Bilayers

    Lolicato, F., Joly, L., Martinez-Seara, H., Fragneto, G., Scoppola, E., Baldelli Bombelli, F., Vattulainen, I., Akola, J. & Maccarini, M., 7 Jun 2019, In : Small. 15, 23, 1805046.

    Research output: Contribution to journalArticleScientificpeer-review

  51. Published

    Methods for simultaneous robot-world-hand–eye calibration: A comparative study

    Ali, I., Suominen, O., Gotchev, A. & Morales, E. R., 2 Jun 2019, In : Sensors (Switzerland). 19, 12, 2837.

    Research output: Contribution to journalArticleScientificpeer-review

  52. Published

    Technical Note: Noise models for virtual clinical trials of digital breast tomosynthesis

    Borges, L. R., Barufaldi, B., Caron, R. F., Bakic, P. R., Foi, A., Maidment, A. D. A. & Vieira, M. A. C., 1 Jun 2019, In : Medical Physics. 46, 6, p. 2683-2689 7 p.

    Research output: Contribution to journalArticleScientificpeer-review

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