Tampere University of Technology

TUTCRIS Research Portal

Publications

  1. 2020
  2. Published

    A Computational Model of Interactions Between Neuronal and Astrocytic Networks: The Role of Astrocytes in the Stability of the Neuronal Firing Rate

    Lenk, K., Satuvuori, E., Lallouette, J., Ladrón-de-Guevara, A., Berry, H. & Hyttinen, J. A. K., 22 Jan 2020, In : Frontiers in Computational Neuroscience. 13, 19 p., 92.

    Research output: Contribution to journalArticleScientificpeer-review

  3. 2019
  4. Published

    Unique Features of Network Bursts Emerge From the Complex Interplay of Excitatory and Inhibitory Receptors in Rat Neocortical Networks

    Teppola, H., Aćimović, J. & Linne, M. L., 6 Sep 2019, In : FRONTIERS IN CELLULAR NEUROSCIENCE. 13, 377.

    Research output: Contribution to journalArticleScientificpeer-review

  5. Published

    Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions

    Javanainen, M., Enkavi, G., Guixà-Gonzaléz, R., Kulig, W., Martinez-Seara, H., Levental, I. & Vattulainen, I., 1 May 2019, In : PLoS Computational Biology. 15, 5, e1007033.

    Research output: Contribution to journalArticleScientificpeer-review

  6. Published

    Viability of Mouse Retinal Explant Cultures Assessed by Preservation of Functionality and Morphology

    Alarautalahti, V., Ragauskas, S., Hakkarainen, J. J., Uusitalo-Järvinen, H., Uusitalo, H., Hyttinen, J., Kalesnykas, G. & Nymark, S., 1 May 2019, In : Investigative ophthalmology & visual science. 60, 6, p. 1914-1927 14 p.

    Research output: Contribution to journalArticleScientificpeer-review

  7. Published

    Advances in Human Stem Cell-Derived Neuronal Cell Culturing and Analysis

    Ylä-Outinen, L., Tanskanen, J. M. A., Kapucu, F. E., Hyysalo, A., Hyttinen, J. A. K. & Narkilahti, S., 2019, In Vitro Neuronal Networks: From Culturing Methods to Neuro-Technological Applications. Springer New York LLC, p. 299-329 31 p. (Advances in Neurobiology; vol. 22).

    Research output: Chapter in Book/Report/Conference proceedingChapterScientificpeer-review

  8. Published

    Astrocyte lineage cells are essential for functional neuronal differentiation and synapse maturation in human iPSC-derived neural networks

    Klapper, S. D., Garg, P., Dagar, S., Lenk, K., Gottmann, K. & Nieweg, K., 2019, In : Glia. 67, 10, p. 1893-1909 17 p.

    Research output: Contribution to journalArticleScientificpeer-review

  9. 2018
  10. Published

    Data-driven study of synchronous popula on ac vity in generic spiking neuronal networks: How much do we capture using the minimal model for the considered phenomena?

    Acimovic, J., Teppola, H., Mäki-Marttunen, T. M. & Linne, M-L., 20 Sep 2018.

    Research output: Other conference contributionPaper, poster or abstractScientific

  11. Published

    Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling

    Pantsar, T., Rissanen, S., Dauch, D., Laitinen, T., Vattulainen, I. & Poso, A., 10 Sep 2018, In : PLoS Computational Biology. 14, 9, e1006458.

    Research output: Contribution to journalArticleScientificpeer-review

  12. 2017
  13. Published

    Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin

    Enkavi, G., Mikkolainen, H., Güngör, B., Ikonen, E. & Vattulainen, I., 1 Oct 2017, In : PLoS Computational Biology. 13, 10, e1005831.

    Research output: Contribution to journalArticleScientificpeer-review

  14. Published

    Atomistic fingerprint of hyaluronan–CD44 binding

    Vuorio, J., Vattulainen, I. & Martinez-Seara, H., 1 Jul 2017, In : PLoS Computational Biology. 13, 7, e1005663.

    Research output: Contribution to journalArticleScientificpeer-review

  15. Published

    Network-wide adaptive burst detection depicts neuronal activity with improved accuracy

    Välkki, I. A., Lenk, K., Mikkonen, J. E., Kapucu, F. E. & Hyttinen, J. A. K., 31 May 2017, In : Frontiers in Computational Neuroscience. 11, 40.

    Research output: Contribution to journalArticleScientificpeer-review

  16. 2016
  17. Published

    Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol

    Teppola, H., Sarkanen, J. R., Jalonen, T. O. & Linne, M-L., 2016, In : Neurochemical Research. 41, 4, p. 731-747

    Research output: Contribution to journalArticleScientificpeer-review

  18. 2015
  19. Published

    The effects of neuron morphology on graph theoretic measures of network connectivity: The analysis of a two-level statistical model

    Acimovic, J., Mäki-Marttunen, T. & Linne, M-L., 10 Jun 2015, In : Frontiers in Neuroanatomy. 9, June, 76.

    Research output: Contribution to journalArticleScientificpeer-review

  20. Published

    Podocyte apoptosis is prevented by blocking the Toll-like receptor pathway

    Saurus, P., Kuusela, S., Lehtonen, E., Hyvönen, M. E., Ristola, M., Fogarty, C. L., Tienari, J., Lassenius, M. I., Forsblom, C., Lehto, M., Saleem, M. A., Groop, P. H., Holthöfer, H. & Lehtonen, S., 1 May 2015, In : CELL DEATH AND DISEASE. 6, 5, e1752.

    Research output: Contribution to journalArticleScientificpeer-review

  21. Published

    Effects of cytokine activation and oxidative stress on the function of the human embryonic stem cell–derived retinal pigment epithelial cells

    Juuti-Uusitalo, K., Nieminen, M., Treumer, F., Ampuja, M., Kallioniemi, A., Klettner, A. & Skottman, H., 2015, In : Investigative Ophthalmology and Visual Science. 56, 11, p. 6265-6274 10 p.

    Research output: Contribution to journalArticleScientificpeer-review

  22. Published

    Patient-specific induced pluripotent stem cell—derived RPE cells: Understanding the pathogenesis of retinopathy in long-chain 3-hydroxyacyl-CoA dehydrogenase deiciency

    Polinati, P. P., Ilmarinen, T., Trokovic, R., Hyotylainen, T., Otonkoski, T., Suomalainen, A., Skottman, H. & Tynitiina, T., 2015, In : Investigative Ophthalmology and Visual Science. 56, 5, p. 3371-3382 12 p.

    Research output: Contribution to journalArticleScientificpeer-review

  23. 2012
  24. Published

    In silico study on structure and dynamics in bursting neuronal networks

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 13 Oct 2012, Neuroscience 2012; 42nd Annual Meeting, New Orleans, USA, October 14-18, 2012. Society for Neuroscience (SfN), 1 p. 300.26/DDD70

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  25. Published

    Significance of graph theoretic measures in predicting neuronal network activity

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 23 Feb 2012, Proceedings of The 9th annual Computational and Systems Neuroscience meeting (COSYNE 2012). Salt Lake City, p. 55-55 1 p. I-15

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  26. Published

    Inhibition of Casein kinase-2 induces p53-dependent cell cycle arrest and sensitizes glioblastoma cells to tumor necrosis factor (TNFα)-induced apoptosis through SIRT1 inhibition

    Dixit, D., Sharma, V., Ghosh, S., Mehta, V. S. & Sen, E., Feb 2012, In : CELL DEATH AND DISEASE. 3, 2, e271.

    Research output: Contribution to journalArticleScientificpeer-review

  27. Published

    Cortical spreading depression in alpha-synuclein knockout mice

    Pelkonen, A. & Yavich, L., Jan 2012, In : SYNAPSE. 66, 1, p. 81-84 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  28. 2011
  29. Published

    COX-2 regulates the proliferation of glioma stem like cells

    Sharma, V., Dixit, D., Ghosh, S. & Sen, E., Oct 2011, In : NEUROCHEMISTRY INTERNATIONAL. 59, 5, p. 567-571 5 p.

    Research output: Contribution to journalArticleScientificpeer-review

  30. Published

    Effects of local structure of neuronal networks on spiking activity in silico

    Mäki-Marttunen, T. M., Acimovic, J., Ruohonen, K. P. & Linne, M-L., 18 Jul 2011, Twentieth Annual Computational Neuroscience Meeting: CNS*2011. Fellous, J-M. & Prinz, A. (eds.). Stockholm: BioMed Central, Vol. 12 (Suppl 1). p. P202 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  31. Published

    Emergence of global and local structural features during development of neuronal networks

    Acimovic, J., 6 Jun 2011, Proceedings of the Eighth International Workshop on Computational Systems Biology, WCSB 2011, June 6-8, 2011, Zürich, Switzerland . Tampere: TICSP, (TICSP Series ; vol. 57).

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  32. Published

    Pathway analysis of expression data: Deciphering functional building blocks of complex diseases

    Emmert-Streib, F. & Glazko, G. V., May 2011, In : PLoS Computational Biology. 7, 5, e1002053.

    Research output: Contribution to journalArticleScientificpeer-review

  33. Published

    Effects of structure on spontaneous activity in simulated neuronal networks

    Mäki-Marttunen, T., Acimovic, J., Ruohonen, K. & Linne, M-L., 11 Apr 2011, Proceedings of Mathematical Neuroscience (ICMS 2011), April 11-13, 2011, Edinburgh, Scotland.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionScientificpeer-review

  34. 2009
  35. Published

    Neural networks, cell cultures and some older work on data analysis.

    Acimovic, J., 15 Jun 2009.

    Research output: Other conference contributionPaper, poster or abstractScientific

  36. 2006
  37. Influence of the neural network topology on the learning dynamics

    Emmert-Streib, F., May 2006, In : Neurocomputing. 69, 10-12, p. 1179-1182 4 p.

    Research output: Contribution to journalArticleScientificpeer-review

  38. 2001
  39. A constrained HMM-based approach to the estimation of perceptual switching dynamics in pigeons

    Otterpohl, J. R., Emmert-Streib, F. & Pawelzik, K., Jun 2001, In : Neurocomputing. 38-40, p. 1495-1501 7 p.

    Research output: Contribution to journalArticleScientificpeer-review