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UniProt: A hub for protein information

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UniProt : A hub for protein information. / Bateman, Alex; Martin, Maria Jesus; O'Donovan, Claire; Magrane, Michele; Apweiler, Rolf; Alpi, Emanuele; Antunes, Ricardo; Arganiska, Joanna; Bely, Benoit; Bingley, Mark; Bonilla, Carlos; Britto, Ramona; Bursteinas, Borisas; Chavali, Gayatri; Cibrian-Uhalte, Elena; Da Silva, Alan; De Giorgi, Maurizio; Dogan, Tunca; Fazzini, Francesco; Gane, Paul; Castro, Leyla Garcia; Garmiri, Penelope; Hatton-Ellis, Emma; Hieta, Reija; Huntley, Rachael; Legge, Duncan; Liu, Wudong; Luo, Jie; Macdougall, Alistair; Mutowo, Prudence; Nightingale, Andrew; Orchard, Sandra; Pichler, Klemens; Poggioli, Diego; Pundir, Sangya; Pureza, Luis; Qi, Guoying; Rosanoff, Steven; Saidi, Rabie; Sawford, Tony; Shypitsyna, Aleksandra; Turner, Edward; Volynkin, Vladimir; Wardell, Tony; Watkins, Xavier; Zellner, Hermann; Cowley, Andrew; Figueira, Luis; Li, Weizhong; McWilliam, Hamish; Lopez, Rodrigo; Xenarios, Ioannis; Bougueleret, Lydie; Bridge, Alan; Poux, Sylvain; Redaschi, Nicole; Aimo, Lucila; Argoud-Puy, Ghislaine; Auchincloss, Andrea; Axelsen, Kristian; Bansal, Parit; Baratin, Delphine; Blatter, Marie Claude; Boeckmann, Brigitte; Bolleman, Jerven; Boutet, Emmanuel; Breuza, Lionel; Casal-Casas, Cristina; De Castro, Edouard; Coudert, Elisabeth; Cuche, Beatrice; Doche, Mikael; Dornevil, Dolnide; Duvaud, Severine; Estreicher, Anne; Famiglietti, Livia; Feuermann, Marc; Gasteiger, Elisabeth; Gehant, Sebastien; Gerritsen, Vivienne; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hinz, Ursula; Hulo, Chantal; Jungo, Florence; Keller, Guillaume; Lara, Vicente; Lemercier, Philippe; Lieberherr, Damien; Lombardot, Thierry; Martin, Xavier; Masson, Patrick; Morgat, Anne; Neto, Teresa; Nouspikel, Nevila; Paesano, Salvo; Pedruzzi, Ivo; Pilbout, Sandrine; Pozzato, Monica; Pruess, Manuela; Rivoire, Catherine; Roechert, Bernd; Schneider, Michel; Sigrist, Christian; Sonesson, Karin; Staehli, Sylvie; Stutz, Andre; Sundaram, Shyamala; Tognolli, Michael; Verbregue, Laure; Veuthey, Anne Lise; Wu, Cathy H.; Arighi, Cecilia N.; Arminski, Leslie; Chen, Chuming; Chen, Yongxing; Garavelli, John S.; Huang, Hongzhan; Laiho, Kati; McGarvey, Peter; Natale, Darren A.; Suzek, Baris E.; Vinayaka, C. R.; Wang, Qinghua; Wang, Yuqi; Yeh, Lai Su; Yerramalla, Meher Shruti; Zhang, Jian.

In: Nucleic Acids Research, Vol. 43, No. D1, 28.01.2015, p. D204-D212.

Research output: Contribution to journalArticleScientificpeer-review

Harvard

Bateman, A, Martin, MJ, O'Donovan, C, Magrane, M, Apweiler, R, Alpi, E, Antunes, R, Arganiska, J, Bely, B, Bingley, M, Bonilla, C, Britto, R, Bursteinas, B, Chavali, G, Cibrian-Uhalte, E, Da Silva, A, De Giorgi, M, Dogan, T, Fazzini, F, Gane, P, Castro, LG, Garmiri, P, Hatton-Ellis, E, Hieta, R, Huntley, R, Legge, D, Liu, W, Luo, J, Macdougall, A, Mutowo, P, Nightingale, A, Orchard, S, Pichler, K, Poggioli, D, Pundir, S, Pureza, L, Qi, G, Rosanoff, S, Saidi, R, Sawford, T, Shypitsyna, A, Turner, E, Volynkin, V, Wardell, T, Watkins, X, Zellner, H, Cowley, A, Figueira, L, Li, W, McWilliam, H, Lopez, R, Xenarios, I, Bougueleret, L, Bridge, A, Poux, S, Redaschi, N, Aimo, L, Argoud-Puy, G, Auchincloss, A, Axelsen, K, Bansal, P, Baratin, D, Blatter, MC, Boeckmann, B, Bolleman, J, Boutet, E, Breuza, L, Casal-Casas, C, De Castro, E, Coudert, E, Cuche, B, Doche, M, Dornevil, D, Duvaud, S, Estreicher, A, Famiglietti, L, Feuermann, M, Gasteiger, E, Gehant, S, Gerritsen, V, Gos, A, Gruaz-Gumowski, N, Hinz, U, Hulo, C, Jungo, F, Keller, G, Lara, V, Lemercier, P, Lieberherr, D, Lombardot, T, Martin, X, Masson, P, Morgat, A, Neto, T, Nouspikel, N, Paesano, S, Pedruzzi, I, Pilbout, S, Pozzato, M, Pruess, M, Rivoire, C, Roechert, B, Schneider, M, Sigrist, C, Sonesson, K, Staehli, S, Stutz, A, Sundaram, S, Tognolli, M, Verbregue, L, Veuthey, AL, Wu, CH, Arighi, CN, Arminski, L, Chen, C, Chen, Y, Garavelli, JS, Huang, H, Laiho, K, McGarvey, P, Natale, DA, Suzek, BE, Vinayaka, CR, Wang, Q, Wang, Y, Yeh, LS, Yerramalla, MS & Zhang, J 2015, 'UniProt: A hub for protein information', Nucleic Acids Research, vol. 43, no. D1, pp. D204-D212. https://doi.org/10.1093/nar/gku989

APA

Bateman, A., Martin, M. J., O'Donovan, C., Magrane, M., Apweiler, R., Alpi, E., ... Zhang, J. (2015). UniProt: A hub for protein information. Nucleic Acids Research, 43(D1), D204-D212. https://doi.org/10.1093/nar/gku989

Vancouver

Bateman A, Martin MJ, O'Donovan C, Magrane M, Apweiler R, Alpi E et al. UniProt: A hub for protein information. Nucleic Acids Research. 2015 Jan 28;43(D1):D204-D212. https://doi.org/10.1093/nar/gku989

Author

Bateman, Alex ; Martin, Maria Jesus ; O'Donovan, Claire ; Magrane, Michele ; Apweiler, Rolf ; Alpi, Emanuele ; Antunes, Ricardo ; Arganiska, Joanna ; Bely, Benoit ; Bingley, Mark ; Bonilla, Carlos ; Britto, Ramona ; Bursteinas, Borisas ; Chavali, Gayatri ; Cibrian-Uhalte, Elena ; Da Silva, Alan ; De Giorgi, Maurizio ; Dogan, Tunca ; Fazzini, Francesco ; Gane, Paul ; Castro, Leyla Garcia ; Garmiri, Penelope ; Hatton-Ellis, Emma ; Hieta, Reija ; Huntley, Rachael ; Legge, Duncan ; Liu, Wudong ; Luo, Jie ; Macdougall, Alistair ; Mutowo, Prudence ; Nightingale, Andrew ; Orchard, Sandra ; Pichler, Klemens ; Poggioli, Diego ; Pundir, Sangya ; Pureza, Luis ; Qi, Guoying ; Rosanoff, Steven ; Saidi, Rabie ; Sawford, Tony ; Shypitsyna, Aleksandra ; Turner, Edward ; Volynkin, Vladimir ; Wardell, Tony ; Watkins, Xavier ; Zellner, Hermann ; Cowley, Andrew ; Figueira, Luis ; Li, Weizhong ; McWilliam, Hamish ; Lopez, Rodrigo ; Xenarios, Ioannis ; Bougueleret, Lydie ; Bridge, Alan ; Poux, Sylvain ; Redaschi, Nicole ; Aimo, Lucila ; Argoud-Puy, Ghislaine ; Auchincloss, Andrea ; Axelsen, Kristian ; Bansal, Parit ; Baratin, Delphine ; Blatter, Marie Claude ; Boeckmann, Brigitte ; Bolleman, Jerven ; Boutet, Emmanuel ; Breuza, Lionel ; Casal-Casas, Cristina ; De Castro, Edouard ; Coudert, Elisabeth ; Cuche, Beatrice ; Doche, Mikael ; Dornevil, Dolnide ; Duvaud, Severine ; Estreicher, Anne ; Famiglietti, Livia ; Feuermann, Marc ; Gasteiger, Elisabeth ; Gehant, Sebastien ; Gerritsen, Vivienne ; Gos, Arnaud ; Gruaz-Gumowski, Nadine ; Hinz, Ursula ; Hulo, Chantal ; Jungo, Florence ; Keller, Guillaume ; Lara, Vicente ; Lemercier, Philippe ; Lieberherr, Damien ; Lombardot, Thierry ; Martin, Xavier ; Masson, Patrick ; Morgat, Anne ; Neto, Teresa ; Nouspikel, Nevila ; Paesano, Salvo ; Pedruzzi, Ivo ; Pilbout, Sandrine ; Pozzato, Monica ; Pruess, Manuela ; Rivoire, Catherine ; Roechert, Bernd ; Schneider, Michel ; Sigrist, Christian ; Sonesson, Karin ; Staehli, Sylvie ; Stutz, Andre ; Sundaram, Shyamala ; Tognolli, Michael ; Verbregue, Laure ; Veuthey, Anne Lise ; Wu, Cathy H. ; Arighi, Cecilia N. ; Arminski, Leslie ; Chen, Chuming ; Chen, Yongxing ; Garavelli, John S. ; Huang, Hongzhan ; Laiho, Kati ; McGarvey, Peter ; Natale, Darren A. ; Suzek, Baris E. ; Vinayaka, C. R. ; Wang, Qinghua ; Wang, Yuqi ; Yeh, Lai Su ; Yerramalla, Meher Shruti ; Zhang, Jian. / UniProt : A hub for protein information. In: Nucleic Acids Research. 2015 ; Vol. 43, No. D1. pp. D204-D212.

Bibtex - Download

@article{9d023ebb7763499eb3aec3b01c984b02,
title = "UniProt: A hub for protein information",
abstract = "UniProt is an important collection of protein sequences and their annotations, which has doubled in size to 80 million sequences during the past year. This growth in sequences has prompted an extension of UniProt accession number space from 6 to 10 characters. An increasing fraction of new sequences are identical to a sequence that already exists in the database with the majority of sequences coming from genome sequencing projects. We have created a new proteome identifier that uniquely identifies a particular assembly of a species and strain or subspecies to help users track the provenance of sequences. We present a new website that has been designed using a user-experience design process. We have introduced an annotation score for all entries in UniProt to represent the relative amount of knowledge known about each protein. These scores will be helpful in identifying which proteins are the best characterized and most informative for comparative analysis. All UniProt data is provided freely and is available on the web at http://www.uniprot.org/.",
author = "Alex Bateman and Martin, {Maria Jesus} and Claire O'Donovan and Michele Magrane and Rolf Apweiler and Emanuele Alpi and Ricardo Antunes and Joanna Arganiska and Benoit Bely and Mark Bingley and Carlos Bonilla and Ramona Britto and Borisas Bursteinas and Gayatri Chavali and Elena Cibrian-Uhalte and {Da Silva}, Alan and {De Giorgi}, Maurizio and Tunca Dogan and Francesco Fazzini and Paul Gane and Castro, {Leyla Garcia} and Penelope Garmiri and Emma Hatton-Ellis and Reija Hieta and Rachael Huntley and Duncan Legge and Wudong Liu and Jie Luo and Alistair Macdougall and Prudence Mutowo and Andrew Nightingale and Sandra Orchard and Klemens Pichler and Diego Poggioli and Sangya Pundir and Luis Pureza and Guoying Qi and Steven Rosanoff and Rabie Saidi and Tony Sawford and Aleksandra Shypitsyna and Edward Turner and Vladimir Volynkin and Tony Wardell and Xavier Watkins and Hermann Zellner and Andrew Cowley and Luis Figueira and Weizhong Li and Hamish McWilliam and Rodrigo Lopez and Ioannis Xenarios and Lydie Bougueleret and Alan Bridge and Sylvain Poux and Nicole Redaschi and Lucila Aimo and Ghislaine Argoud-Puy and Andrea Auchincloss and Kristian Axelsen and Parit Bansal and Delphine Baratin and Blatter, {Marie Claude} and Brigitte Boeckmann and Jerven Bolleman and Emmanuel Boutet and Lionel Breuza and Cristina Casal-Casas and {De Castro}, Edouard and Elisabeth Coudert and Beatrice Cuche and Mikael Doche and Dolnide Dornevil and Severine Duvaud and Anne Estreicher and Livia Famiglietti and Marc Feuermann and Elisabeth Gasteiger and Sebastien Gehant and Vivienne Gerritsen and Arnaud Gos and Nadine Gruaz-Gumowski and Ursula Hinz and Chantal Hulo and Florence Jungo and Guillaume Keller and Vicente Lara and Philippe Lemercier and Damien Lieberherr and Thierry Lombardot and Xavier Martin and Patrick Masson and Anne Morgat and Teresa Neto and Nevila Nouspikel and Salvo Paesano and Ivo Pedruzzi and Sandrine Pilbout and Monica Pozzato and Manuela Pruess and Catherine Rivoire and Bernd Roechert and Michel Schneider and Christian Sigrist and Karin Sonesson and Sylvie Staehli and Andre Stutz and Shyamala Sundaram and Michael Tognolli and Laure Verbregue and Veuthey, {Anne Lise} and Wu, {Cathy H.} and Arighi, {Cecilia N.} and Leslie Arminski and Chuming Chen and Yongxing Chen and Garavelli, {John S.} and Hongzhan Huang and Kati Laiho and Peter McGarvey and Natale, {Darren A.} and Suzek, {Baris E.} and Vinayaka, {C. R.} and Qinghua Wang and Yuqi Wang and Yeh, {Lai Su} and Yerramalla, {Meher Shruti} and Jian Zhang",
year = "2015",
month = "1",
day = "28",
doi = "10.1093/nar/gku989",
language = "English",
volume = "43",
pages = "D204--D212",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "D1",

}

RIS (suitable for import to EndNote) - Download

TY - JOUR

T1 - UniProt

T2 - A hub for protein information

AU - Bateman, Alex

AU - Martin, Maria Jesus

AU - O'Donovan, Claire

AU - Magrane, Michele

AU - Apweiler, Rolf

AU - Alpi, Emanuele

AU - Antunes, Ricardo

AU - Arganiska, Joanna

AU - Bely, Benoit

AU - Bingley, Mark

AU - Bonilla, Carlos

AU - Britto, Ramona

AU - Bursteinas, Borisas

AU - Chavali, Gayatri

AU - Cibrian-Uhalte, Elena

AU - Da Silva, Alan

AU - De Giorgi, Maurizio

AU - Dogan, Tunca

AU - Fazzini, Francesco

AU - Gane, Paul

AU - Castro, Leyla Garcia

AU - Garmiri, Penelope

AU - Hatton-Ellis, Emma

AU - Hieta, Reija

AU - Huntley, Rachael

AU - Legge, Duncan

AU - Liu, Wudong

AU - Luo, Jie

AU - Macdougall, Alistair

AU - Mutowo, Prudence

AU - Nightingale, Andrew

AU - Orchard, Sandra

AU - Pichler, Klemens

AU - Poggioli, Diego

AU - Pundir, Sangya

AU - Pureza, Luis

AU - Qi, Guoying

AU - Rosanoff, Steven

AU - Saidi, Rabie

AU - Sawford, Tony

AU - Shypitsyna, Aleksandra

AU - Turner, Edward

AU - Volynkin, Vladimir

AU - Wardell, Tony

AU - Watkins, Xavier

AU - Zellner, Hermann

AU - Cowley, Andrew

AU - Figueira, Luis

AU - Li, Weizhong

AU - McWilliam, Hamish

AU - Lopez, Rodrigo

AU - Xenarios, Ioannis

AU - Bougueleret, Lydie

AU - Bridge, Alan

AU - Poux, Sylvain

AU - Redaschi, Nicole

AU - Aimo, Lucila

AU - Argoud-Puy, Ghislaine

AU - Auchincloss, Andrea

AU - Axelsen, Kristian

AU - Bansal, Parit

AU - Baratin, Delphine

AU - Blatter, Marie Claude

AU - Boeckmann, Brigitte

AU - Bolleman, Jerven

AU - Boutet, Emmanuel

AU - Breuza, Lionel

AU - Casal-Casas, Cristina

AU - De Castro, Edouard

AU - Coudert, Elisabeth

AU - Cuche, Beatrice

AU - Doche, Mikael

AU - Dornevil, Dolnide

AU - Duvaud, Severine

AU - Estreicher, Anne

AU - Famiglietti, Livia

AU - Feuermann, Marc

AU - Gasteiger, Elisabeth

AU - Gehant, Sebastien

AU - Gerritsen, Vivienne

AU - Gos, Arnaud

AU - Gruaz-Gumowski, Nadine

AU - Hinz, Ursula

AU - Hulo, Chantal

AU - Jungo, Florence

AU - Keller, Guillaume

AU - Lara, Vicente

AU - Lemercier, Philippe

AU - Lieberherr, Damien

AU - Lombardot, Thierry

AU - Martin, Xavier

AU - Masson, Patrick

AU - Morgat, Anne

AU - Neto, Teresa

AU - Nouspikel, Nevila

AU - Paesano, Salvo

AU - Pedruzzi, Ivo

AU - Pilbout, Sandrine

AU - Pozzato, Monica

AU - Pruess, Manuela

AU - Rivoire, Catherine

AU - Roechert, Bernd

AU - Schneider, Michel

AU - Sigrist, Christian

AU - Sonesson, Karin

AU - Staehli, Sylvie

AU - Stutz, Andre

AU - Sundaram, Shyamala

AU - Tognolli, Michael

AU - Verbregue, Laure

AU - Veuthey, Anne Lise

AU - Wu, Cathy H.

AU - Arighi, Cecilia N.

AU - Arminski, Leslie

AU - Chen, Chuming

AU - Chen, Yongxing

AU - Garavelli, John S.

AU - Huang, Hongzhan

AU - Laiho, Kati

AU - McGarvey, Peter

AU - Natale, Darren A.

AU - Suzek, Baris E.

AU - Vinayaka, C. R.

AU - Wang, Qinghua

AU - Wang, Yuqi

AU - Yeh, Lai Su

AU - Yerramalla, Meher Shruti

AU - Zhang, Jian

PY - 2015/1/28

Y1 - 2015/1/28

N2 - UniProt is an important collection of protein sequences and their annotations, which has doubled in size to 80 million sequences during the past year. This growth in sequences has prompted an extension of UniProt accession number space from 6 to 10 characters. An increasing fraction of new sequences are identical to a sequence that already exists in the database with the majority of sequences coming from genome sequencing projects. We have created a new proteome identifier that uniquely identifies a particular assembly of a species and strain or subspecies to help users track the provenance of sequences. We present a new website that has been designed using a user-experience design process. We have introduced an annotation score for all entries in UniProt to represent the relative amount of knowledge known about each protein. These scores will be helpful in identifying which proteins are the best characterized and most informative for comparative analysis. All UniProt data is provided freely and is available on the web at http://www.uniprot.org/.

AB - UniProt is an important collection of protein sequences and their annotations, which has doubled in size to 80 million sequences during the past year. This growth in sequences has prompted an extension of UniProt accession number space from 6 to 10 characters. An increasing fraction of new sequences are identical to a sequence that already exists in the database with the majority of sequences coming from genome sequencing projects. We have created a new proteome identifier that uniquely identifies a particular assembly of a species and strain or subspecies to help users track the provenance of sequences. We present a new website that has been designed using a user-experience design process. We have introduced an annotation score for all entries in UniProt to represent the relative amount of knowledge known about each protein. These scores will be helpful in identifying which proteins are the best characterized and most informative for comparative analysis. All UniProt data is provided freely and is available on the web at http://www.uniprot.org/.

UR - http://www.scopus.com/inward/record.url?scp=84946069451&partnerID=8YFLogxK

U2 - 10.1093/nar/gku989

DO - 10.1093/nar/gku989

M3 - Article

VL - 43

SP - D204-D212

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - D1

ER -