UniProt: A hub for protein information
Research output: Contribution to journal › Article › Scientific › peer-review
Standard
UniProt : A hub for protein information. / Bateman, Alex; Martin, Maria Jesus; O'Donovan, Claire; Magrane, Michele; Apweiler, Rolf; Alpi, Emanuele; Antunes, Ricardo; Arganiska, Joanna; Bely, Benoit; Bingley, Mark; Bonilla, Carlos; Britto, Ramona; Bursteinas, Borisas; Chavali, Gayatri; Cibrian-Uhalte, Elena; Da Silva, Alan; De Giorgi, Maurizio; Dogan, Tunca; Fazzini, Francesco; Gane, Paul; Castro, Leyla Garcia; Garmiri, Penelope; Hatton-Ellis, Emma; Hieta, Reija; Huntley, Rachael; Legge, Duncan; Liu, Wudong; Luo, Jie; Macdougall, Alistair; Mutowo, Prudence; Nightingale, Andrew; Orchard, Sandra; Pichler, Klemens; Poggioli, Diego; Pundir, Sangya; Pureza, Luis; Qi, Guoying; Rosanoff, Steven; Saidi, Rabie; Sawford, Tony; Shypitsyna, Aleksandra; Turner, Edward; Volynkin, Vladimir; Wardell, Tony; Watkins, Xavier; Zellner, Hermann; Cowley, Andrew; Figueira, Luis; Li, Weizhong; McWilliam, Hamish; Lopez, Rodrigo; Xenarios, Ioannis; Bougueleret, Lydie; Bridge, Alan; Poux, Sylvain; Redaschi, Nicole; Aimo, Lucila; Argoud-Puy, Ghislaine; Auchincloss, Andrea; Axelsen, Kristian; Bansal, Parit; Baratin, Delphine; Blatter, Marie Claude; Boeckmann, Brigitte; Bolleman, Jerven; Boutet, Emmanuel; Breuza, Lionel; Casal-Casas, Cristina; De Castro, Edouard; Coudert, Elisabeth; Cuche, Beatrice; Doche, Mikael; Dornevil, Dolnide; Duvaud, Severine; Estreicher, Anne; Famiglietti, Livia; Feuermann, Marc; Gasteiger, Elisabeth; Gehant, Sebastien; Gerritsen, Vivienne; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hinz, Ursula; Hulo, Chantal; Jungo, Florence; Keller, Guillaume; Lara, Vicente; Lemercier, Philippe; Lieberherr, Damien; Lombardot, Thierry; Martin, Xavier; Masson, Patrick; Morgat, Anne; Neto, Teresa; Nouspikel, Nevila; Paesano, Salvo; Pedruzzi, Ivo; Pilbout, Sandrine; Pozzato, Monica; Pruess, Manuela; Rivoire, Catherine; Roechert, Bernd; Schneider, Michel; Sigrist, Christian; Sonesson, Karin; Staehli, Sylvie; Stutz, Andre; Sundaram, Shyamala; Tognolli, Michael; Verbregue, Laure; Veuthey, Anne Lise; Wu, Cathy H.; Arighi, Cecilia N.; Arminski, Leslie; Chen, Chuming; Chen, Yongxing; Garavelli, John S.; Huang, Hongzhan; Laiho, Kati; McGarvey, Peter; Natale, Darren A.; Suzek, Baris E.; Vinayaka, C. R.; Wang, Qinghua; Wang, Yuqi; Yeh, Lai Su; Yerramalla, Meher Shruti; Zhang, Jian.
In:
Nucleic Acids Research, Vol. 43, No. D1, 28.01.2015, p. D204-D212.
Research output: Contribution to journal › Article › Scientific › peer-review
Harvard
Bateman, A, Martin, MJ, O'Donovan, C, Magrane, M, Apweiler, R, Alpi, E, Antunes, R, Arganiska, J, Bely, B, Bingley, M, Bonilla, C, Britto, R, Bursteinas, B, Chavali, G, Cibrian-Uhalte, E, Da Silva, A, De Giorgi, M, Dogan, T, Fazzini, F, Gane, P, Castro, LG, Garmiri, P, Hatton-Ellis, E, Hieta, R, Huntley, R, Legge, D, Liu, W, Luo, J, Macdougall, A, Mutowo, P, Nightingale, A, Orchard, S, Pichler, K, Poggioli, D, Pundir, S, Pureza, L, Qi, G, Rosanoff, S, Saidi, R, Sawford, T, Shypitsyna, A, Turner, E, Volynkin, V, Wardell, T, Watkins, X, Zellner, H, Cowley, A, Figueira, L, Li, W, McWilliam, H, Lopez, R, Xenarios, I, Bougueleret, L, Bridge, A, Poux, S, Redaschi, N, Aimo, L, Argoud-Puy, G, Auchincloss, A, Axelsen, K, Bansal, P, Baratin, D, Blatter, MC, Boeckmann, B, Bolleman, J, Boutet, E, Breuza, L, Casal-Casas, C, De Castro, E, Coudert, E, Cuche, B, Doche, M, Dornevil, D, Duvaud, S, Estreicher, A, Famiglietti, L, Feuermann, M, Gasteiger, E, Gehant, S, Gerritsen, V, Gos, A, Gruaz-Gumowski, N, Hinz, U, Hulo, C, Jungo, F, Keller, G, Lara, V, Lemercier, P, Lieberherr, D, Lombardot, T, Martin, X, Masson, P, Morgat, A, Neto, T, Nouspikel, N, Paesano, S, Pedruzzi, I, Pilbout, S, Pozzato, M, Pruess, M, Rivoire, C, Roechert, B, Schneider, M, Sigrist, C, Sonesson, K, Staehli, S, Stutz, A, Sundaram, S, Tognolli, M, Verbregue, L, Veuthey, AL, Wu, CH, Arighi, CN, Arminski, L, Chen, C, Chen, Y, Garavelli, JS, Huang, H, Laiho, K, McGarvey, P, Natale, DA, Suzek, BE, Vinayaka, CR, Wang, Q, Wang, Y, Yeh, LS, Yerramalla, MS & Zhang, J 2015, '
UniProt: A hub for protein information',
Nucleic Acids Research, vol. 43, no. D1, pp. D204-D212.
https://doi.org/10.1093/nar/gku989APA
Bateman, A., Martin, M. J., O'Donovan, C., Magrane, M., Apweiler, R., Alpi, E., ... Zhang, J. (2015).
UniProt: A hub for protein information.
Nucleic Acids Research,
43(D1), D204-D212.
https://doi.org/10.1093/nar/gku989Vancouver
Author
Bateman, Alex ; Martin, Maria Jesus ; O'Donovan, Claire ; Magrane, Michele ; Apweiler, Rolf ; Alpi, Emanuele ; Antunes, Ricardo ; Arganiska, Joanna ; Bely, Benoit ; Bingley, Mark ; Bonilla, Carlos ; Britto, Ramona ; Bursteinas, Borisas ; Chavali, Gayatri ; Cibrian-Uhalte, Elena ; Da Silva, Alan ; De Giorgi, Maurizio ; Dogan, Tunca ; Fazzini, Francesco ; Gane, Paul ; Castro, Leyla Garcia ; Garmiri, Penelope ; Hatton-Ellis, Emma ; Hieta, Reija ; Huntley, Rachael ; Legge, Duncan ; Liu, Wudong ; Luo, Jie ; Macdougall, Alistair ; Mutowo, Prudence ; Nightingale, Andrew ; Orchard, Sandra ; Pichler, Klemens ; Poggioli, Diego ; Pundir, Sangya ; Pureza, Luis ; Qi, Guoying ; Rosanoff, Steven ; Saidi, Rabie ; Sawford, Tony ; Shypitsyna, Aleksandra ; Turner, Edward ; Volynkin, Vladimir ; Wardell, Tony ; Watkins, Xavier ; Zellner, Hermann ; Cowley, Andrew ; Figueira, Luis ; Li, Weizhong ; McWilliam, Hamish ; Lopez, Rodrigo ; Xenarios, Ioannis ; Bougueleret, Lydie ; Bridge, Alan ; Poux, Sylvain ; Redaschi, Nicole ; Aimo, Lucila ; Argoud-Puy, Ghislaine ; Auchincloss, Andrea ; Axelsen, Kristian ; Bansal, Parit ; Baratin, Delphine ; Blatter, Marie Claude ; Boeckmann, Brigitte ; Bolleman, Jerven ; Boutet, Emmanuel ; Breuza, Lionel ; Casal-Casas, Cristina ; De Castro, Edouard ; Coudert, Elisabeth ; Cuche, Beatrice ; Doche, Mikael ; Dornevil, Dolnide ; Duvaud, Severine ; Estreicher, Anne ; Famiglietti, Livia ; Feuermann, Marc ; Gasteiger, Elisabeth ; Gehant, Sebastien ; Gerritsen, Vivienne ; Gos, Arnaud ; Gruaz-Gumowski, Nadine ; Hinz, Ursula ; Hulo, Chantal ; Jungo, Florence ; Keller, Guillaume ; Lara, Vicente ; Lemercier, Philippe ; Lieberherr, Damien ; Lombardot, Thierry ; Martin, Xavier ; Masson, Patrick ; Morgat, Anne ; Neto, Teresa ; Nouspikel, Nevila ; Paesano, Salvo ; Pedruzzi, Ivo ; Pilbout, Sandrine ; Pozzato, Monica ; Pruess, Manuela ; Rivoire, Catherine ; Roechert, Bernd ; Schneider, Michel ; Sigrist, Christian ; Sonesson, Karin ; Staehli, Sylvie ; Stutz, Andre ; Sundaram, Shyamala ; Tognolli, Michael ; Verbregue, Laure ; Veuthey, Anne Lise ; Wu, Cathy H. ; Arighi, Cecilia N. ; Arminski, Leslie ; Chen, Chuming ; Chen, Yongxing ; Garavelli, John S. ; Huang, Hongzhan ; Laiho, Kati ; McGarvey, Peter ; Natale, Darren A. ; Suzek, Baris E. ; Vinayaka, C. R. ; Wang, Qinghua ; Wang, Yuqi ; Yeh, Lai Su ; Yerramalla, Meher Shruti ; Zhang, Jian. /
UniProt : A hub for protein information. In:
Nucleic Acids Research. 2015 ; Vol. 43, No. D1. pp. D204-D212.
@article{9d023ebb7763499eb3aec3b01c984b02,
title = "UniProt: A hub for protein information",
abstract = "UniProt is an important collection of protein sequences and their annotations, which has doubled in size to 80 million sequences during the past year. This growth in sequences has prompted an extension of UniProt accession number space from 6 to 10 characters. An increasing fraction of new sequences are identical to a sequence that already exists in the database with the majority of sequences coming from genome sequencing projects. We have created a new proteome identifier that uniquely identifies a particular assembly of a species and strain or subspecies to help users track the provenance of sequences. We present a new website that has been designed using a user-experience design process. We have introduced an annotation score for all entries in UniProt to represent the relative amount of knowledge known about each protein. These scores will be helpful in identifying which proteins are the best characterized and most informative for comparative analysis. All UniProt data is provided freely and is available on the web at http://www.uniprot.org/.",
author = "Alex Bateman and Martin, {Maria Jesus} and Claire O'Donovan and Michele Magrane and Rolf Apweiler and Emanuele Alpi and Ricardo Antunes and Joanna Arganiska and Benoit Bely and Mark Bingley and Carlos Bonilla and Ramona Britto and Borisas Bursteinas and Gayatri Chavali and Elena Cibrian-Uhalte and {Da Silva}, Alan and {De Giorgi}, Maurizio and Tunca Dogan and Francesco Fazzini and Paul Gane and Castro, {Leyla Garcia} and Penelope Garmiri and Emma Hatton-Ellis and Reija Hieta and Rachael Huntley and Duncan Legge and Wudong Liu and Jie Luo and Alistair Macdougall and Prudence Mutowo and Andrew Nightingale and Sandra Orchard and Klemens Pichler and Diego Poggioli and Sangya Pundir and Luis Pureza and Guoying Qi and Steven Rosanoff and Rabie Saidi and Tony Sawford and Aleksandra Shypitsyna and Edward Turner and Vladimir Volynkin and Tony Wardell and Xavier Watkins and Hermann Zellner and Andrew Cowley and Luis Figueira and Weizhong Li and Hamish McWilliam and Rodrigo Lopez and Ioannis Xenarios and Lydie Bougueleret and Alan Bridge and Sylvain Poux and Nicole Redaschi and Lucila Aimo and Ghislaine Argoud-Puy and Andrea Auchincloss and Kristian Axelsen and Parit Bansal and Delphine Baratin and Blatter, {Marie Claude} and Brigitte Boeckmann and Jerven Bolleman and Emmanuel Boutet and Lionel Breuza and Cristina Casal-Casas and {De Castro}, Edouard and Elisabeth Coudert and Beatrice Cuche and Mikael Doche and Dolnide Dornevil and Severine Duvaud and Anne Estreicher and Livia Famiglietti and Marc Feuermann and Elisabeth Gasteiger and Sebastien Gehant and Vivienne Gerritsen and Arnaud Gos and Nadine Gruaz-Gumowski and Ursula Hinz and Chantal Hulo and Florence Jungo and Guillaume Keller and Vicente Lara and Philippe Lemercier and Damien Lieberherr and Thierry Lombardot and Xavier Martin and Patrick Masson and Anne Morgat and Teresa Neto and Nevila Nouspikel and Salvo Paesano and Ivo Pedruzzi and Sandrine Pilbout and Monica Pozzato and Manuela Pruess and Catherine Rivoire and Bernd Roechert and Michel Schneider and Christian Sigrist and Karin Sonesson and Sylvie Staehli and Andre Stutz and Shyamala Sundaram and Michael Tognolli and Laure Verbregue and Veuthey, {Anne Lise} and Wu, {Cathy H.} and Arighi, {Cecilia N.} and Leslie Arminski and Chuming Chen and Yongxing Chen and Garavelli, {John S.} and Hongzhan Huang and Kati Laiho and Peter McGarvey and Natale, {Darren A.} and Suzek, {Baris E.} and Vinayaka, {C. R.} and Qinghua Wang and Yuqi Wang and Yeh, {Lai Su} and Yerramalla, {Meher Shruti} and Jian Zhang",
year = "2015",
month = "1",
day = "28",
doi = "10.1093/nar/gku989",
language = "English",
volume = "43",
pages = "D204--D212",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "D1",
}
RIS (suitable for import to EndNote) - Download
TY - JOUR
T1 - UniProt
T2 - A hub for protein information
AU - Bateman, Alex
AU - Martin, Maria Jesus
AU - O'Donovan, Claire
AU - Magrane, Michele
AU - Apweiler, Rolf
AU - Alpi, Emanuele
AU - Antunes, Ricardo
AU - Arganiska, Joanna
AU - Bely, Benoit
AU - Bingley, Mark
AU - Bonilla, Carlos
AU - Britto, Ramona
AU - Bursteinas, Borisas
AU - Chavali, Gayatri
AU - Cibrian-Uhalte, Elena
AU - Da Silva, Alan
AU - De Giorgi, Maurizio
AU - Dogan, Tunca
AU - Fazzini, Francesco
AU - Gane, Paul
AU - Castro, Leyla Garcia
AU - Garmiri, Penelope
AU - Hatton-Ellis, Emma
AU - Hieta, Reija
AU - Huntley, Rachael
AU - Legge, Duncan
AU - Liu, Wudong
AU - Luo, Jie
AU - Macdougall, Alistair
AU - Mutowo, Prudence
AU - Nightingale, Andrew
AU - Orchard, Sandra
AU - Pichler, Klemens
AU - Poggioli, Diego
AU - Pundir, Sangya
AU - Pureza, Luis
AU - Qi, Guoying
AU - Rosanoff, Steven
AU - Saidi, Rabie
AU - Sawford, Tony
AU - Shypitsyna, Aleksandra
AU - Turner, Edward
AU - Volynkin, Vladimir
AU - Wardell, Tony
AU - Watkins, Xavier
AU - Zellner, Hermann
AU - Cowley, Andrew
AU - Figueira, Luis
AU - Li, Weizhong
AU - McWilliam, Hamish
AU - Lopez, Rodrigo
AU - Xenarios, Ioannis
AU - Bougueleret, Lydie
AU - Bridge, Alan
AU - Poux, Sylvain
AU - Redaschi, Nicole
AU - Aimo, Lucila
AU - Argoud-Puy, Ghislaine
AU - Auchincloss, Andrea
AU - Axelsen, Kristian
AU - Bansal, Parit
AU - Baratin, Delphine
AU - Blatter, Marie Claude
AU - Boeckmann, Brigitte
AU - Bolleman, Jerven
AU - Boutet, Emmanuel
AU - Breuza, Lionel
AU - Casal-Casas, Cristina
AU - De Castro, Edouard
AU - Coudert, Elisabeth
AU - Cuche, Beatrice
AU - Doche, Mikael
AU - Dornevil, Dolnide
AU - Duvaud, Severine
AU - Estreicher, Anne
AU - Famiglietti, Livia
AU - Feuermann, Marc
AU - Gasteiger, Elisabeth
AU - Gehant, Sebastien
AU - Gerritsen, Vivienne
AU - Gos, Arnaud
AU - Gruaz-Gumowski, Nadine
AU - Hinz, Ursula
AU - Hulo, Chantal
AU - Jungo, Florence
AU - Keller, Guillaume
AU - Lara, Vicente
AU - Lemercier, Philippe
AU - Lieberherr, Damien
AU - Lombardot, Thierry
AU - Martin, Xavier
AU - Masson, Patrick
AU - Morgat, Anne
AU - Neto, Teresa
AU - Nouspikel, Nevila
AU - Paesano, Salvo
AU - Pedruzzi, Ivo
AU - Pilbout, Sandrine
AU - Pozzato, Monica
AU - Pruess, Manuela
AU - Rivoire, Catherine
AU - Roechert, Bernd
AU - Schneider, Michel
AU - Sigrist, Christian
AU - Sonesson, Karin
AU - Staehli, Sylvie
AU - Stutz, Andre
AU - Sundaram, Shyamala
AU - Tognolli, Michael
AU - Verbregue, Laure
AU - Veuthey, Anne Lise
AU - Wu, Cathy H.
AU - Arighi, Cecilia N.
AU - Arminski, Leslie
AU - Chen, Chuming
AU - Chen, Yongxing
AU - Garavelli, John S.
AU - Huang, Hongzhan
AU - Laiho, Kati
AU - McGarvey, Peter
AU - Natale, Darren A.
AU - Suzek, Baris E.
AU - Vinayaka, C. R.
AU - Wang, Qinghua
AU - Wang, Yuqi
AU - Yeh, Lai Su
AU - Yerramalla, Meher Shruti
AU - Zhang, Jian
PY - 2015/1/28
Y1 - 2015/1/28
N2 - UniProt is an important collection of protein sequences and their annotations, which has doubled in size to 80 million sequences during the past year. This growth in sequences has prompted an extension of UniProt accession number space from 6 to 10 characters. An increasing fraction of new sequences are identical to a sequence that already exists in the database with the majority of sequences coming from genome sequencing projects. We have created a new proteome identifier that uniquely identifies a particular assembly of a species and strain or subspecies to help users track the provenance of sequences. We present a new website that has been designed using a user-experience design process. We have introduced an annotation score for all entries in UniProt to represent the relative amount of knowledge known about each protein. These scores will be helpful in identifying which proteins are the best characterized and most informative for comparative analysis. All UniProt data is provided freely and is available on the web at http://www.uniprot.org/.
AB - UniProt is an important collection of protein sequences and their annotations, which has doubled in size to 80 million sequences during the past year. This growth in sequences has prompted an extension of UniProt accession number space from 6 to 10 characters. An increasing fraction of new sequences are identical to a sequence that already exists in the database with the majority of sequences coming from genome sequencing projects. We have created a new proteome identifier that uniquely identifies a particular assembly of a species and strain or subspecies to help users track the provenance of sequences. We present a new website that has been designed using a user-experience design process. We have introduced an annotation score for all entries in UniProt to represent the relative amount of knowledge known about each protein. These scores will be helpful in identifying which proteins are the best characterized and most informative for comparative analysis. All UniProt data is provided freely and is available on the web at http://www.uniprot.org/.
UR - http://www.scopus.com/inward/record.url?scp=84946069451&partnerID=8YFLogxK
U2 - 10.1093/nar/gku989
DO - 10.1093/nar/gku989
M3 - Article
VL - 43
SP - D204-D212
JO - Nucleic Acids Research
JF - Nucleic Acids Research
SN - 0305-1048
IS - D1
ER -
