Abraham, BG, Santala, V, Tkachenko, NV & Karp, M 2014, 'Fluorescent protein-based FRET sensor for intracellular monitoring of redox status in bacteria at single cell level', Analytical and Bioanalytical Chemistry, Vuosikerta. 406, Nro 28, Sivut 7195-7204. https://doi.org/10.1007/s00216-014-8165-1

Ahola, N, Veiranto, M, Männistö, N, Karp, M, Rich, J, Efimov, A, Seppälä, J & Kellomäki, M 2012, 'Processing and sustained in vitro release of rifampicin containing composites to enhance the treatment of osteomyelitis', Biomatter, Vuosikerta. 2, Nro 4, Sivut 1-13. https://doi.org/10.4161/biom.22793

Ahola, N, Männistö, N, Veiranto, M, Karp, M, Rich, J, Efimov, A, Seppälä, J & Kellomäki, M 2013, 'An in vitro study of composites of poly(L-lactide-co-e-caprolactone), ß-tricalcium phosphate and ciprofloxacin intended for local treatment of osteomyelitis', Biomatter, Vuosikerta. 3, Nro 2, e23162, Sivut 1-13. https://doi.org/10.4161/biom.23162

Arioli, S, Ragg, E, Scaglioni, L, Fessas, D, Signorelli, M, Karp, M, Daffoncio, D, De Noni, I, Mulas, L, Oggioni, M, Guglielmetti, S & Mora, D 2010, 'Alkalizing reactions streamline cellular metabolism in acidogenic microorganisms', PLoS ONE, Vuosikerta. 5, Nro 11, e15520, Sivut 1-8. https://doi.org/10.1371/journal.pone.0015520

Bayr, S, Pakarinen, O, Korppoo, A, Liuksia, S, Väisänen, A, Kaparaju, P & Rintala, J 2012, 'Effect of additives on process stability of mesophilic anaerobic monodigestion of pig slaughterhouse waste', Bioresource Technology, Vuosikerta. 120, Nro September, Sivut 106-113. https://doi.org/10.1016/j.biortech.2012.06.009

Bayr, S, Kaparaju, P & Rintala, J 2013, 'Screening pretreatment methods to enhance thermophilic anaerobic digestion of pulp and paper mill wastewater treatment secondary sludge', Chemical Engineering Journal, Vuosikerta. 223, Sivut 479-486. https://doi.org/10.1016/j.cej.2013.02.119

Bayr, S, Rantanen, M, Kaparaju, P & Rintala, J 2012, 'Mesophilic and thermophilic anaerobic co-digestion of rendering plant and slaughterhouse wastes', Bioresource Technology, Vuosikerta. 104, Nro January, Sivut 28-36. https://doi.org/10.1016/j.biortech.2011.09.104

Bayr, S & Rintala, J 2012, 'Thermophilic anaerobic digestion of pulp and paper mill primary sludge and co-digestion of primary and secondary sludge', Water Research, Vuosikerta. 46, Nro 15, Sivut 4713-4720. https://doi.org/10.1016/j.watres.2012.06.033

Bermejo-Velasco, D, Varghese, OP, P. Oommen, O, Hilborn, J & Nawale, GN 2018, 'Thiazolidine chemistry revisited: a fast, efficient and stable click-type reaction at physiological pH', Chemical Communications, Sivut 12507-12510. https://doi.org/10.1039/c8cc05405c

Bevilaqua, D, Garcia Jr., O & Tuovinen, OH 2010, 'Oxidative dissolution of bornite by Acidithiobacillus ferrooxidans', Process Biochemistry, Vuosikerta. 45, Nro 1, Sivut 101-106. https://doi.org/10.1016/j.procbio.2009.08.013

Bevilaqua, D, Lahti-Tommila, H, Garcia Jr., O, Puhakka, JA & Tuovinen, OH 2014, 'Bacterial and chemical leaching of chalcopyrite concentrates as affected by the redox potential and ferric/ferrous iron ratio at 22 C', International Journal of Mineral Processing, Vuosikerta. 132, Sivut 1-7. https://doi.org/10.1016/j.minpro.2014.08.008

Bevilaqua, D, Lahti, H, Suegama, P, Garcia Jr., O, Benedetti, A, Puhakka, J & Tuovinen, O 2013, 'Effect of NA-chloride on the bioleaching of a chalcopyrite concentrate in shake flasks and stirred tank bioreactors', Hydrometallurgy, Vuosikerta. 138, Sivut 1-13. https://doi.org/10.1016/j.hydromet.2013.06.008

Bevilaqua, D, Garcia Jr, O, Suegama, PH, Benedetti, AV, Lahti, H, Puhakka, J & Tuovinen, OH 2011, Avaliacao eletroquimica de residuos de biolixiviacao da calcopirita (CuFeS2) por acidithiobacillus ferrooxidans. julkaisussa XXIV ENTMME 2011, Encontro Nacional de Tratamento de Minerios e Metalurgia Extrativa, 16 a 19 de outubro de 2011, Salvador/Bahia. Encontro Nacional de Tratamento de Minerios e Metalurgia Extrativa, Encontro Nacional de Tratamento de Minerios e Metalurgia Extrativa, Sivut 1179-1186.

Bhatti, TM, Bigham, JM, Vuorinen, A & Tuovinen, OH 2011, 'Weathering of phlogopite in simulated bioleaching solutions', International Journal of Mineral Processing, Vuosikerta. 98, Nro 1-2, Sivut 30-34. https://doi.org/10.1016/j.minpro.2010.10.004

Bhatti, TM, Bigham, JM, Vuorinen, A & Tuovinen, OH 2011, 'Weathering of biotite in Acidithiobacillus ferrooxidans cultures', Geomicrobiology Journal, Vuosikerta. 28, Nro 2, Sivut 130-134. https://doi.org/10.1080/01490451003720901

Bhatti, TM, Bigham, JM, Riekkola-Vanhanen, M & Tuovinen, OH 2010, 'Altered mineralogy associated with stirred tank bioreactor leaching of a black schist ore', Hydrometallurgy, Vuosikerta. 100, Nro 3-4, Sivut 181-184. https://doi.org/10.1016/j.hydromet.2009.11.010

Bigham, JM, Jones, FS, Özkaya, B, Sahinkaya, E, Puhakka, JA & Tuovinen, OH 2010, 'Characterization of jarosites produced by chemical synthesis over a temperature gradient from 2 to 40 °C', International Journal of Mineral Processing, Vuosikerta. 94, Nro 3-4, Sivut 121-128. https://doi.org/10.1016/j.minpro.2010.01.005

Bomberg, M, Munster, U, Pumpanen, J, Ilvesniemi, H & Heinonsalo, J 2011, 'Archaeal communities in boreal forest tree rhizospheres respond to changing soil temperatures', Microbial Ecology, Vuosikerta. 62, Nro 1, Sivut 205-217. https://doi.org/10.1007/s00248-011-9837-4

Butti, SK, Velvizhi, G, Sulonen, MLK, Haavisto, JM, Oguz Koroglu, E, Yusuf Cetinkaya, A, Singh, S, Arya, D, Annie Modestra, J, Vamsi Krishna, K, Verma, A, Ozkaya, B, Lakaniemi, A-M, Puhakka, JA & Venkata Mohan, S 2016, 'Microbial electrochemical technologies with the perspective of harnessing bioenergy: Maneuvering towards upscaling', Renewable and Sustainable Energy Reviews, Vuosikerta. 53, Sivut 462-476. https://doi.org/10.1016/j.rser.2015.08.058

Carver, SM, Lepistö, R & Tuovinen, OH 2010, Hydrolysis and metabolism of cellulose by an anaerobic, thermophilic consortium. julkaisussa Third International Symposium on Energy from Biomass and Waste, Venice, Italy, 8-11 November 2010. Sivut 1-9.

Carver, SM, Nelson, MC, Lepistö, R, Yu, Z & Tuovinen, OH 2012, 'Hydrogen and volatile fatty acid production during fermentation of cellulosic sustrates by a thermophilic consortium at 50 and 60 °C', Bioresource Technology, Vuosikerta. 104, Nro January, Sivut 424-431. https://doi.org/10.1016/j.biortech.2011.11.013

Carver, SM, Hulatt, CJ, Thomas, DN & Tuovinen, OH 2011, 'Thermophilic, anaerobic co-digestion of microalgal biomass and cellulose for H2 production', BIODEGRADATION, Vuosikerta. 22, Nro 4, Sivut 805-814. https://doi.org/10.1007/s10532-010-9419-z

Carver, SM, Vuoriranta, P & Tuovinen, OH 2011, 'A thermophilic microbial fuel cell design', Journal of Power Sources, Vuosikerta. 196, Nro 8, Sivut 3757-3760. https://doi.org/10.1016/j.jpowsour.2010.12.088

Chen, C-C, Sen, B, Chuang, Y-S, Tsai, C-J & Lay, C-H 2012, 'Effect of effluent recycle ratio in a continuous anaerobic biohydrogen production system', Journal of Cleaner Production, Vuosikerta. 32, Sivut 236-243. https://doi.org/10.1016/j.jclepro.2012.04.006

Chu, C-Y, Sen, B, Lay, C-H, Lin, Y-C & Lin, C-Y 2012, 'Direct fermentation of sweet potato to produce maximal hydrogen and ethanol', Applied Energy, Vuosikerta. 100, Sivut 10-18. https://doi.org/10.1016/j.apenergy.2012.06.023

Ciranna, A, Ferrari, R, Santala, V & Karp, M 2014, 'Inhibitory effects of substrate and soluble end products on biohydrogen production of the alkalithermophile Caloramator celer: Kinetic, metabolic and transcription analyses', International Journal of Hydrogen Energy, Vuosikerta. 39, Nro 12, Sivut 6391-6401. https://doi.org/10.1016/j.ijhydene.2014.02.047

Ciranna, A, Larjo, A, Kivistö, A, Santala, V, Roos, C & Karp, M 2013, 'Draft genome sequence of the hydrogen- and ethanol-producing anaerobic alkalithermophilic bacterium Caloramator celer.', Genome Announcements, Vuosikerta. 1, Nro 4, Sivut 1-2. https://doi.org/10.1128/genomeA.00471-13

Ciranna, A, Santala, V & Karp, M 2012, 'Enhancing biohydrogen production of the alkalithermophile Thermobrachium celere', International Journal of Hydrogen Energy, Vuosikerta. 37, Nro 7, Sivut 5550-5558. https://doi.org/10.1016/j.ijhydene.2011.12.105

Ciranna, A, Pawar, SS, Santala, V, Karp, M & van Niel, EWJ 2014, 'Assessment of metabolic flux distribution in the thermophilic hydrogen producer Caloramator celer as affected by external pH and hydrogen partial pressure', Microbial Cell Factories, Vuosikerta. 13, Nro 1, 48. https://doi.org/10.1186/1475-2859-13-48

Ciranna, A 2014, Biohydrogen production in extreme conditions: A comprehensive study of the fermentative metabolism of a polyextremophilic bacterium. Tampere University of Technology. Publication, Vuosikerta. 1228, Tampere University of Technology, Tampere.

Dessì, P, Jain, R, Singh, S, Seder-Colomina, M, van Hullebusch, ED, Rene, ER, Ahammad, SZ, Carucci, A & Lens, PNL 2016, 'Effect of temperature on selenium removal from wastewater by UASB reactors', Water Research, Vuosikerta. 94, Sivut 146-154. https://doi.org/10.1016/j.watres.2016.02.007

Di Capua, F, Papirio, S, Lens, PNL & Esposito, G 2015, 'Chemolithotrophic denitrification in biofilm reactors', Chemical Engineering Journal, Vuosikerta. 280, Sivut 643-657. https://doi.org/10.1016/j.cej.2015.05.131

Di Capua, F, Ahoranta, SH, Papirio, S, Lens, PNL & Esposito, G 2016, 'Impacts of sulfur source and temperature on sulfur-driven denitrification by pure and mixed cultures of Thiobacillus', Process Biochemistry, Vuosikerta. 51, Nro 10, Sivut 1576-1584. https://doi.org/10.1016/j.procbio.2016.06.010

Doan, P, Nguyen, T, Yli-Harja, O, Candeias, NR & Kandhavelu, M 2017, 'Effect of alkylaminophenols on growth inhibition and apoptosis of bone cancer cells', European Journal of Pharmaceutical Sciences, Vuosikerta. 107, Sivut 208–216. https://doi.org/10.1016/j.ejps.2017.07.016

Efimova, E, Marjakangas, JM, Lakaniemi, A-M, Koskinen, PEP & Puhakka, JA 2013, 'Lipid profile characterization of wastewaters from different origins', Water Science and Technology, Vuosikerta. 68, Nro 11, Sivut 2505-2514. https://doi.org/10.2166/wst.2013.538

Futagami, T, Morono, Y, Terada, T, Kaksonen, AH & Inagaki, F 2013, 'Distribution of dehalogenation activity in subseafloor sediments of the Nankai Trough subduction zone', Philosophical Transactions of the Royal Society B: Biological Sciences, Vuosikerta. 368, Nro 1616, 20120249, Sivut 1-15. https://doi.org/10.1098/rstb.2012.0249

George Abraham, B, Tkachenko, NV, Santala, V, Lemmetyinen, H & Karp, M 2011, 'Bidirectional fluorescence resonance energy transfer (FRET) in mutated and chemically modified yellow fluorescent protein (YFP)', Bioconjugate Chemistry, Vuosikerta. 22, Nro 2, Sivut 227-234. https://doi.org/10.1021/bc100372u

George Abraham, B 2015, Fluorescent Protein Toolbox: Protein Engineering Broadens the Range of in vitro and in vivo Applications of Fluorescent Proteins. Tampere University of Technology. Publication, Vuosikerta. 1351, Tampere University of Technology.

Gramp, JP, Bigham, JM, Jones, FS & Tuovinen, OH 2010, 'Formation of Fe-sulfides in cultures of sulfate-reducing bacteria', Journal of Hazardous Materials, Vuosikerta. 175, Nro 1-3, Sivut 1062-1067. https://doi.org/10.1016/j.jhazmat.2009.10.119

Guglielmetti, S, Balzaretti, S, Taverniti, V, Miriani, M, Milani, C, Scarafoni, A, Corona, S, Ciranna, A, Arioli, S, Santala, V, Iametti, S, Bonomi, F, Ventura, M, Mora, D & Karp, M 2014, 'TgaA, a VirB1-like component belonging to a putative type IV secretion system of Bifidobacterium bifidum MIMBb75', Applied and Environmental Microbiology, Vuosikerta. 80, Nro 17, Sivut 5161-5169. https://doi.org/10.1128/AEM.01413-14

Guglielmetti, S, Taverniti, V, Minuzzo, M, Arioli, S, Zanoni, I, Stuknyte, M, Granucci, F, Karp, M & Mora, D 2010, 'A dairy bacterium displays in vitro probiotic propesties for the pharyngeal mucosa by antagonizing group a streptococci and modulating the immune response', Infection and Immunity, Vuosikerta. 78, Nro 11, Sivut 4734-4743. https://doi.org/10.1128/IAI.00559-10

Guglielmetti, S, Taverniti, V, Minuzzo, M, Arioli, S, Stuknyte, M, Karp, M & Mora, D 2010, 'Oral bacteria as potential probiotics for the pharyngeal mucosa', Applied and Environmental Microbiology, Vuosikerta. 76, Nro 12, Sivut 3048-3058. https://doi.org/10.1128/AEM.00109-10

Guglielmetti, S, Zanoni, I, Balzaretti, S, Miriani, M, Taverniti, V, de Noni, I, Presti, I, Stuknyte, M, Scarafoni, A, Arioli, S, Iametti, S, Bonomi, F, Mora, D, Karp, M & Granucci, F 2014, 'Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain', Applied and Environmental Microbiology, Vuosikerta. 80, Nro 17, Sivut 5170-5177. https://doi.org/10.1128/AEM.00761-14

Gumulya, Y, Boxall, NJ, Khaleque, HN, Santala, V, Carlson, RP & Kaksonen, AH 2018, 'In a quest for engineering acidophiles for biomining applications: Challenges and opportunities', Genes, Vuosikerta. 9, Nro 2, 116. https://doi.org/10.3390/genes9020116

Halinen, A-K, Beecroft, NJ, Määttä, K, Nurmi, P, Laukkanen, K, Kaksonen, AH, Riekkola-Vanhanen, M & Puhakka, JA 2012, 'Microbial community dynamics during a demonstration-scale bioheap leaching operation', Hydrometallurgy, Vuosikerta. 125-126, Sivut 34-41. https://doi.org/10.1016/j.hydromet.2012.05.001

Hänninen, A, Salpavaara, T, Lyyra, I, Kroon, M, Lekkala, J & Kellomäki, M 2018, 'Bioresorbable Conductive Wire with Minimal Metal Content', ACS Biomaterials Science & Engineering, Vuosikerta. 5, Nro 2, Sivut 1134-1140. https://doi.org/10.1021/acsbiomaterials.8b01292

Hassan, SS, Farhan, M, Mangayil, R, Huttunen, H & Aho, T 2013, 'Bioprocess data mining using regularized regression and random forests', BMC Systems Biology, Vuosikerta. 7, Nro Suppl 1, 5. https://doi.org/10.1186/1752-0509-7-S1-S5

Heiskanen, JP, Manninen, VM, Pankov, D, Omar, WAE, Kastinen, T, Hukka, TI, Lemmetyinen, HJ & Hormi, OEO 2015, 'Aryl end-capped quaterthiophenes applied as anode interfacial layers in inverted organic solar cells', Thin Solid Films, Vuosikerta. 574, Sivut 196-206. https://doi.org/10.1016/j.tsf.2014.12.007

Höhn, J, Lehtonen, E, Rasi, S & Rintala, J 2014, 'A geographical information system (GIS) based methodology for determination of potential biomasses and sites for biogas plants in southern Finland', Applied Energy, Vuosikerta. 113, Sivut 1-10. https://doi.org/10.1016/j.apenergy.2013.07.005

Hulatt, CJ, Lakaniemi, A-M, Puhakka, JA & Thomas, DN 2012, 'Energy Demands of Nitrogen Supply in Mass Cultivation of Two Commercially Important Microalgal Species, Chlorella vulgaris and Dunaliella tertiolecta', BioEnergy Research, Vuosikerta. 5, Nro 3, Sivut 669-684. https://doi.org/10.1007/s12155-011-9175-x

Işildar, A, van de Vossenberg, J, Rene, ER, van Hullebusch, ED & Lens, PNL 2016, 'Two-step bioleaching of copper and gold from discarded printed circuit boards (PCB)', Waste Management, Vuosikerta. 57, Sivut 149–157. https://doi.org/10.1016/j.wasman.2015.11.033

Isohanni, P, Huehn, S, Aho, T, Alter, T & Lyhs, U 2013, 'Heat stress adaptation induces cross-protection against lethal acid stress conditions in Arcobacter butzleri but not in Campylobacter jejuni', Food Microbiology, Vuosikerta. 34, Nro 2, Sivut 431-435. https://doi.org/10.1016/j.fm.2013.02.001

Jaatinen, S, Lakaniemi, A-M & Rintala, J 2016, 'Use of diluted urine for cultivation of Chlorella vulgaris', Environmental Technology, Vuosikerta. 37, Nro 9, Sivut 1159-1170. https://doi.org/10.1080/09593330.2015.1105300

Jäntti, V, Ylinen, T, Subramaniyam, NP, Kamata, K, Yli-Hankala, A, Kauppinen, P & Sonkajärvi, E 2018, 'Electroencephalographic signals during anesthesia recorded from surface and depth electrodes', International Journal of Radiation Biology, Vuosikerta. 94, Nro 10, Sivut 934-943. https://doi.org/10.1080/09553002.2018.1478159

Jokela, P & Lepistö, R 2014, 'Lamella dissolved air flotation treatment of fish farming effluents as a part of an integrated farming and effluent treatment concept', Environmental Technology, Vuosikerta. 35, Nro 21, Sivut 2727-2733. https://doi.org/10.1080/09593330.2014.919035

Kaartinen, T, Sormunen, K & Rintala, J 2013, 'Case study on sampling, processing and characterization of landfilled municipal solid waste in the view of landfill mining', Journal of Cleaner Production, Vuosikerta. 55, Sivut 56-66. https://doi.org/10.1016/j.jclepro.2013.02.036

Kaartinen, T, Laine-Ylijoki, J, Ahoranta, S, Korhonen, T & Neitola, R 2017, 'Arsenic Removal from Mine Waters with Sorption Techniques', Mine Water and the Environment, Vuosikerta. 36, Nro 2, Sivut 199-208. https://doi.org/10.1007/s10230-017-0450-8

Kainulainen, TP, Sirviö, JA, Sethi, J, Hukka, TI & Heiskanen, JP 2018, 'UV-Blocking Synthetic Biopolymer from Biomass-Based Bifuran Diester and Ethylene Glycol', Macromolecules, Vuosikerta. 51, Nro 5, Sivut 1822-1829. https://doi.org/10.1021/acs.macromol.7b02457

Kaksonen, AH, Robertson, WJ, Plumb, JJ, Wylie, JT, Bastow, TP, Douglas, GB, Franzmann, PD, Nevatalo, L, Sahinkaya, H, Auvinen, H, Mäkinen, A, Lakaniemi, A-M, Lavonen, L, Kolli, K, Özkaya, B & Puhakka, J 2010, Sulfate-reducing fluidized-bed bioreactor processes for acidic metal- and sulfate-containing waters. julkaisussa SME Annual Meeting Feb. 28-Mar. 03, 2010, Phoenix, AZ, USA. Sivut 1-6.

Kaksonen, AH, Lavonen, L, Kuusenaho, M, Kolli, A, Närhi, H, Vestola, E, Puhakka, JA & Tuovinen, OH 2011, 'Bioleaching and recovery of metals from final slag waste of the copper smelting industry', Minerals Engineering, Vuosikerta. 24, Nro 11, Sivut 1113-1121. https://doi.org/10.1016/j.mineng.2011.02.011

Kaksonen, AH, Särkijärvi, S, Puhakka, JA, Peuraniemi, E, Junnikkala, S & Tuovinen, OH 2016, 'Chemical and bacterial leaching of metals from a smelter slag in acid solutions', Hydrometallurgy, Vuosikerta. 159, Sivut 46-53. https://doi.org/10.1016/j.hydromet.2015.10.032

Kaksonen, AH, Särkijärvi, S, Peuraniemi, E, Junnikkala, S, Puhakka, JA & Tuovinen, OH 2017, 'Metal biorecovery in acid solutions from a copper smelter slag', Hydrometallurgy, Vuosikerta. 168, Sivut 135-140. https://doi.org/10.1016/j.hydromet.2016.08.014

Kaksonen, AH, Särkijärvi, S, Puhakka, JA, Peuraniemi, E, Junnikkala, S & Tuovinen, OH 2017, 'Solid phase changes in chemically and biologically leached copper smelter slag', Minerals Engineering, Vuosikerta. 106, Sivut 97-101. https://doi.org/10.1016/j.mineng.2016.08.029

Kandhavelu, M, Paturu, L, Mizar, A, Mahmudov, KT, Kopylovich, MN, Karp, M, Yli-Harja, O, Pombeiro, AJL & Ribeiro, AS 2012, 'Synthesis, characterization and antimicrobial activity of arylhydrazones of methylene active compounds', Pharmaceutical Chemistry Journal, Vuosikerta. 46, Nro 3, Sivut 157-164. https://doi.org/10.1007/s11094-012-0751-y

Kannisto, M, Aho, T, Karp, M & Santala, V 2014, 'Metabolic engineering of Acinetobacter baylyi ADP1 for improved growth on gluconate and glucose', Applied and Environmental Microbiology, Vuosikerta. 80, Nro 22, Sivut 7021-7027. https://doi.org/10.1128/AEM.01837-14

Kannisto, M, Efimova, E, Karp, M & Santala, V 2016, 'Growth and wax ester production of an Acinetobacter baylyi ADP1 mutant deficient in exopolysaccharide capsule synthesis', Journal of Industrial Microbiology and Biotechnology, Sivut 1-7. https://doi.org/10.1007/s10295-016-1872-1

Kaparaju, P & Rintala, J 2013, Generation of heat and power from biogas for stationary applications: boilers, gas engines and turbines, combined heat and power (CHP) plants and fuel cells. julkaisussa A Wellinger, J Murphy & D Baxter (toim), The biogas handbook: Science, production and applications. Woodhead Publishing, Sivut 404-427.

Kaparaju, P, Rasi, S & Rintala, J 2013, Biogas upgrading and compression. julkaisussa NE Korres, P O´Kiely, JAH Benzie & JS West (toim), Bioenergy Production by Anaerobic Digestion: Using Agricultural Biomass and Organic Wastes. Routledge, London, Sivut 152-182. https://doi.org/10.4324/9780203137697

Karadag, D & Puhakka, JA 2010, 'Effect of changing temperature on anaerobic hydrogen production and microbial community composition in an open-mixed culture bioreactor', International Journal of Hydrogen Energy, Vuosikerta. 35, Nro 20, Sivut 10954-10959. https://doi.org/10.1016/j.ijhydene.2010.07.070

Karadag, D & Puhakka, JA 2010, 'Enhancement of anaerobic hydrogen production by iron and nickel', International Journal of Hydrogen Energy, Vuosikerta. 35, Nro 16, Sivut 8554-8560. https://doi.org/10.1016/j.ijhydene.2010.04.174

Karadag, D, Özkaya, B, Ölmez, E, Nissilä, ME, CakmakCi, M, Yildiz, S & Puhakka, JA 2013, 'Profiling of bacterial community in a full-scale aerobic composting plant', International Biodeterioration and Biodegradation, Vuosikerta. 77, Sivut 85-90. https://doi.org/10.1016/j.ibiod.2012.10.011

Karadag, D & Puhakka, JA 2010, 'Direction of glucose fermentation towards hydrogen or ethanol production through on-line pH control', International Journal of Hydrogen Energy, Vuosikerta. 35, Nro 19, Sivut 10245-10251. https://doi.org/10.1016/j.ijhydene.2010.07.139

Karp, MT, Hemmilä, I, Mäntsälä, PI & Suominen, AI 1983, 'Time-resolved europium fluorescence in enzyme activity measurements: a sensitive protease assay', Journal of applied biochemistry, Vuosikerta. 5, Nro 6, Sivut 399-403.

Karp, MT, Raunio, RP & Lövgren, TN-E 1983, 'Simultaneous extraction and combined bioluminescent assay of NAD+ and NADH', ANALYTICAL BIOCHEMISTRY, Vuosikerta. 128, Nro 1, Sivut 175-180. https://doi.org/10.1016/0003-2697(83)90359-7

Keipi, T, Tolvanen, KES, Tolvanen, H & Konttinen, J 2016, 'Thermo-catalytic decomposition of methane: The effect of reaction parameters on process design and the utilization possibilities of the produced carbon', Energy Conversion and Management, Vuosikerta. 126, Sivut 923-934. https://doi.org/10.1016/j.enconman.2016.08.060

Kinnunen, HV, Koskinen, PEP & Rintala, J 2014, 'Mesophilic and thermophilic anaerobic laboratory-scale digestion of Nannochloropsis microalga residues', Bioresource Technology, Vuosikerta. 155, Sivut 314-322. https://doi.org/10.1016/j.biortech.2013.12.115

Kivistö, A, Santala, V & Karp, M 2010, 'Hydrogen production from glycerol using halophilic fermentative bacteria', Bioresource Technology, Vuosikerta. 101, Sivut 8671-8677. https://doi.org/10.1016/j.biortech.2010.06.066

Kivistö, A, Larjo, A, Ciranna, A, Santala, V, Roos, C & Karp, M 2013, 'Genome Sequence of Halanaerobium saccharolyticum subsp. saccharolyticum Strain DSM 6643T, a Halophilic Hydrogen-Producing Bacterium', Genome Announcements, Vuosikerta. 1, Nro 2, Sivut 1-2. https://doi.org/10.1128/genomeA.00187-13

Kivistö, A, Santala, V & Karp, M 2013, 'Non-sterile process for biohydrogen and 1,3-propanediol production from raw glycerol', International Journal of Hydrogen Energy, Vuosikerta. 38, Nro 27, Sivut 11749-11755. https://doi.org/10.1016/j.ijhydene.2013.06.119

Kivistö, A, Santala, V & Karp, M 2012, '1,3-Propanediol production and tolerance of a halophilic fermentative bacterium, Halanaerobium saccharolyticum subsp saccharolyticum', Journal of Biotechnology, Vuosikerta. 158, Nro 4, Sivut 242-247. https://doi.org/10.1016/j.jbiotec.2011.10.013

Kivistö, A, Santala, V & Karp, M 2011, 'Closing the 1,3-propanediol route enhances hydrogen production from glyserol by Halanaerobium saccharolyticum subsp. saccharolyticum', International Journal of Hydrogen Energy, Vuosikerta. 36, Nro 12, Sivut 7074-7080. https://doi.org/10.1016/j.ijhydene.2011.03.012

Kivistö, A & Karp, MT 2011, 'Halophilic anaerobic fermentative bacteria: Review', Journal of Biotechnology, Vuosikerta. 152, Nro 4, Sivut 114-124. https://doi.org/10.1016/j.jbiotec.2010.08.014

Kivistö, A, Santala, V & Karp, M 2010, Biohydrogen and 1,3-Propanediol production using halophilic fermentative bacteria. julkaisussa ESF-Bielefeld-CeBiTec Conference, Microbes and Industrial Biotechnology, Bielefeld, Germany, 21-24 November 2010, Booklet of Abstracts. Sivut 21-21.

Kolehmainen, RE, Crochet, LM, Kortelainen, NM, Langwaldt, JH & Puhakka, JA 2010, 'Biodegradation of aqueous organic matter over seasonal changes: bioreactor experiments with indigenous lake water bacteria', Journal of Environmental Engineering: ASCE, Vuosikerta. 136, Nro 6, Sivut 607-615. https://doi.org/10.1061/(ASCE)EE.1943-7870.0000197

Köroglu, EO, Yilmaz Baysoy, D, Cetinkaya, AY, Özkaya, B & Cakmakci, M 2014, 'Novel design of a multitube microbial fuel cell (UM2FC) for energy recovery and treatment of membrane concentrates', Biomass & Bioenergy, Vuosikerta. 69, Sivut 58-65. https://doi.org/10.1016/j.biombioe.2014.07.014

Korpela, MT, Kurittu, JS, Karvinen, JT & Karp, MT 1998, 'A recombinant Escherichia coli sensor strain for the detection of tetracyclines', Analytical Chemistry, Vuosikerta. 70, Nro 21, Sivut 4457-4462. https://doi.org/10.1021/ac980740e

Kumar, G, Lay, C-H, Chu, C-Y, Wu, J-H, Lee, S-C & Lin, C-Y 2012, 'Seed inocula for biohydrogen production from biodiesel solid residues', International Journal of Hydrogen Energy, Vuosikerta. 37, Nro 29, Sivut 15489-15495. https://doi.org/10.1016/j.ijhydene.2012.04.016

Lakaniemi, A-M, Tuovinen, OH & Puhakka, JA 2012, 'Production of Electricity and Butanol from Microalgal Biomass in Microbial Fuel Cells', BioEnergy Research, Vuosikerta. 5, Nro 2, Sivut 481-491. https://doi.org/10.1007/s12155-012-9186-2

Lakaniemi, A-M, Nevatalo, LM, Kaksonen, AH & Puhakka, JA 2010, 'Mine wastewater treatment using Phalaris arundinacea plant material hydrolyzate as substrate for sulfate-reducing bioreactor', Bioresource Technology, Vuosikerta. 101, Nro 11, Sivut 3931-3939. https://doi.org/10.1016/j.biortech.2010.01.020

Lakaniemi, A-M, Intihar, VM, Tuovinen, OH & Puhakka, JA 2012, 'Growth of Dunaliella tertiolecta and associated bacteria in photobioreactors', Journal of Industrial Microbiology and Biotechnology, Vuosikerta. 39, Nro 9, Sivut 1357-1365. https://doi.org/10.1007/s10295-012-1133-x

Lakaniemi, A-M, Intihar, VM, Tuovinen, OH & Puhakka, JA 2012, 'Growth of Chlorella vulgaris and associated bacteria in photobioreactors', Microbial Biotechnology, Vuosikerta. 5, Nro 1, Sivut 69-78. https://doi.org/10.1111/j.1751-7915.2011.00298.x

Lakaniemi, A-M, Koskinen, PEP, Nevatalo, LM, Kaksonen, AH & Puhakka, JA 2011, 'Biogenic hydrogen and methane production from reed canary grass', Biomass & Bioenergy, Vuosikerta. 35, Nro 2, Sivut 773-780. https://doi.org/10.1016/j.biombioe.2010.10.032

Lakaniemi, A-M, Tuovinen, OH & Puhakka, JA 2013, 'Anaerobic conversion of microalgal biomass to sustainable energy carriers - A review', Bioresource Technology, Vuosikerta. 135, Nro May, Sivut 222-231. https://doi.org/10.1016/j.biortech.2012.08.096

Lakaniemi, A-M, Hulatt, CJ, Wakeman, KD, Thomas, DN & Puhakka, JA 2012, 'Eukaryotic and prokaryotic microbial communities during microalgal biomass production', Bioresource Technology, Vuosikerta. 124, Nro November, Sivut 387-393. https://doi.org/10.1016/j.biortech.2012.08.048

Lakaniemi, A-M, Hulatt, CJ, Thomas, DN, Tuovinen, OH & Puhakka, JA 2011, 'Biogenic hydrogen and methane production from Chlorella vulgaris and Dunaliella tertiolecta biomass', Biotechnology for Biofuels, Vuosikerta. 4, Nro 1, 34, Sivut 1-12. https://doi.org/10.1186/1754-6834-4-34

Läntelä, J, Rasi, S, Lehtinen, J & Rintala, J 2012, 'Landfill gas upgrading with pilot-scale water scrubber: Performance assessment with adsorption water recycling', Applied Energy, Vuosikerta. 92, Nro April, Sivut 307-314. https://doi.org/10.1016/j.apenergy.2011.10.011

Lappalainen, JO, Karp, MT, Juvonen, R, Virta, MPJ & Nurmi, J 2000, 'Comparison of the total mercury content in sediment samples with a mercury sensor bacteria test and Vibrio fischeri toxicity test', Environmental Toxicology, Vuosikerta. 15, Nro 5, Sivut 443-448. https://doi.org/10.1002/1522-7278(2000)15:5<443::AID-TOX12>3.0.CO;2-L

Lay, C-H, Sen, B, Chen, C-C, Wu, J-H, Lee, S-C & Lin, C-Y 2013, 'Co-fermentation of water hyacinth and beverage wastewater in powder and pellet form for hydrogen production', Bioresource Technology, Vuosikerta. 135, Sivut 610-615. https://doi.org/10.1016/j.biortech.2012.06.094

Lehtinen, T, Efimova, E, Tremblay, PL, Santala, S, Zhang, T & Santala, V 2017, 'Production of long chain alkyl esters from carbon dioxide and electricity by a two-stage bacterial process', Bioresource Technology, Vuosikerta. 243, Sivut 30-36. https://doi.org/10.1016/j.biortech.2017.06.073

Lehtinen, T, Efimova, E, Santala, S & Santala, V 2018, 'Improved fatty aldehyde and wax ester production by overexpression of fatty acyl-CoA reductases', Microbial Cell Factories, Vuosikerta. 17, Nro 1, 19. https://doi.org/10.1186/s12934-018-0869-z

Lehtinen, T, Virtanen, H, Santala, S & Santala, V 2018, 'Production of alkanes from CO2 by engineered bacteria', Biotechnology for Biofuels, Vuosikerta. 11, 228. https://doi.org/10.1186/s13068-018-1229-2

Lehtinen, T 2018, Solar Fuels and Chemicals: Engineering Bacterial Platform for the Production of Long-Chain Hydrocarbons from Carbon Dioxide and Electricity. Tampere University of Technology. Publication, Vuosikerta. 1574, Tampere University of Technology.

Li, Y-C, Nissilä, ME, Wu, S-Y, Lin, C-Y & Puhakka, JA 2012, 'Silage as source of bacteria and electrons for dark fermentative hydrogen production', International Journal of Hydrogen Energy, Vuosikerta. 37, Nro 20, Sivut 15518-15524. https://doi.org/10.1016/j.ijhydene.2012.04.060

Li, C, Blencke, H-M, Smith, LC, Karp, MT & Stensvåg, K 2010, 'Two recombinant peptides, SpStrongylocins 1 and 2, from Strongylocentrotus purpuratus, show antimicrobial activity against Gram-positive and Gram-negative bacteria', Developmental and Comparative Immunology, Vuosikerta. 34, Nro 3, Sivut 286-292. https://doi.org/10.1016/j.dci.2009.10.006

Lindsasy, MBJ, Wakeman, KD, Rowe, OF, Grail, BM, Ptacek, CJ, Blowes, DW & Johnson, DB 2011, 'Microbiology and geochemistry of mine tailings amended with organic carbon for passive treatment of pore water', Geomicrobiology Journal, Vuosikerta. 28, Nro 3, Sivut 229-241. https://doi.org/10.1080/01490451.2010.493570

L.K. Sulonen, M, Lakaniemi, A-M, Kokko, ME & Puhakka, JA 2017, 'The effect of anode potential on bioelectrochemical and electrochemical tetrathionate degradation', Bioresource Technology, Vuosikerta. 226, Sivut 173-180. https://doi.org/10.1016/j.biortech.2016.12.023

Mäkinen, AE, Lay, C-H, Nissilä, ME & Puhakka, JA 2013, 'Bioelectricity production on xylose with a compost enrichment culture', International Journal of Hydrogen Energy, Vuosikerta. 38, Nro 35, Sivut 15606-15612. https://doi.org/10.1016/j.ijhydene.2013.04.137

Mäkinen, AE, Nissilä, ME & Puhakka, JA 2012, 'Dark fermentative hydrogen production from xylose by a hot spring enrichment culture', International Journal of Hydrogen Energy, Vuosikerta. 37, Nro 17, Sivut 12234-12240. https://doi.org/10.1016/j.ijhydene.2012.05.158

Mal, J, Nancharaiah, YV, Van Hullebusch, ED & Lens, PNL 2016, 'Metal chalcogenide quantum dots: Biotechnological synthesis and applications', RSC Advances, Vuosikerta. 6, Nro 47, Sivut 41477-41495. https://doi.org/10.1039/c6ra08447h

Mangayil, R, Karp, M & Santala, V 2012, 'Bioconversion of crude glycerol from biodiesel production to hydrogen', International Journal of Hydrogen Energy, Vuosikerta. 37, Nro 17, Sivut 12198-12204. https://doi.org/10.1016/j.ijhydene.2012.06.010

Mangayil, R 2015, Biohydrogen Production: A Protein to Community Level Perspective Study. Tampere University of Technology. Publication, Vuosikerta. 1282, Tampere University of Technology.

Mangayil, R, Aho, T, Karp, M & Santala, V 2015, 'Improved bioconversion of crude glycerol to hydrogen by statistical optimization of media components', Renewable Energy, Vuosikerta. 75, Sivut 583-589. https://doi.org/10.1016/j.renene.2014.10.051

Mangayil, R, Santala, V & Karp, M 2011, 'Fermentative hydrogen production from different sugars by Citrobacter sp. CMC-1 in batch culture', International Journal of Hydrogen Energy, Vuosikerta. 36, Sivut 15187-15194. https://doi.org/10.1016/j.ijhydene.2011.08.076

Männistö, NM, Ahola, N, Karp, MT, Veiranto, M & Kellomäki, M 2014, 'In vitro bioluminescence used as a method for real-time inhibition zone testing for antibiotic-releasing composites', British Microbiology Research Journal, Vuosikerta. 4, Nro 2, Sivut 235-254. https://doi.org/10.9734/BMRJ/2014/6661

Marjakangas, JM, Lakaniemi, AM, Koskinen, PEP, Chang, JS & Puhakka, JA 2015, 'Lipid production by eukaryotic microorganisms isolated from palm oil mill effluent', Biochemical Engineering Journal, Vuosikerta. 99, Sivut 48-54. https://doi.org/10.1016/j.bej.2015.03.006

Marjakangas, JM, Chen, CY, Lakaniemi, AM, Puhakka, JA, Whang, LM & Chang, JS 2015, 'Simultaneous nutrient removal and lipid production with Chlorella vulgaris on sterilized and non-sterilized anaerobically pretreated piggery wastewater', Biochemical Engineering Journal, Vuosikerta. 103, Sivut 177-184. https://doi.org/10.1016/j.bej.2015.07.011

Marjakangas, JM, Chen, C-Y, Lakaniemi, A-M, Puhakka, JA, Whang, L-M & Chang, J-S 2015, 'Selecting an indigenous microalgal strain for lipid production in anaerobically treated piggery wastewater', Bioresource Technology, Vuosikerta. 191, Sivut 369-376. https://doi.org/10.1016/j.biortech.2015.02.075

Mehrang, S, Jauhiainen, M, Pietilä, J, Puustinen, J, Ruokolainen, J & Nieminen, H 2018, Identification of Parkinson's Disease Utilizing a Single Self-recorded 20-step Walking Test Acquired by Smartphone's Inertial Measurement Unit. julkaisussa 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018. Vuosikerta. 2018-July, 8512921, Institute of Electrical and Electronics Engineers Inc., Sivut 2913-2916, 18/07/18. https://doi.org/10.1109/EMBC.2018.8512921

Nancharaiah, YV & Lens, PNL 2015, 'Selenium biomineralization for biotechnological applications', Trends in Biotechnology, Vuosikerta. 33, Nro 6, Sivut 323-330. https://doi.org/10.1016/j.tibtech.2015.03.004

Nancharaiah, YV, Venkata Mohan, S & Lens, PNL 2015, 'Metals removal and recovery in bioelectrochemical systems: A review', Bioresource Technology, Vuosikerta. 195, Sivut 102-114. https://doi.org/10.1016/j.biortech.2015.06.058

Nevatalo, LM, Bijmans, MFM, Lens, PNL, Kaksonen, AH & Puhakka, JA 2010, 'The effect of sub-optimal temperature on specific sulfidogenic activity of mesophilic SRB in an H2-fed membrane bioreactor', Process Biochemistry, Vuosikerta. 45, Nro 3, Sivut 363-368. https://doi.org/10.1016/j.procbio.2009.10.007

Nevatalo, LM, Mäkinen, AE, Kaksonen, AH & Puhakka, JA 2010, 'Biological hydrogen slufide production in an ethanol-lactate fed fluidized-bed bioreactor', Bioresource Technology, Vuosikerta. 101, Nro 1, Sivut 276-284. https://doi.org/10.1016/j.biortech.2009.07.042

Nevatalo, LM, Bijmans, MFM, Lens, PNL, Kaksonen, AH & Puhakka, JA 2010, 'Hydrogenotrophic sulfate reduction in a gas-lift bioreactor operated at 9°C', Journal of Microbiology and Biotechnology, Vuosikerta. 20, Nro 3, Sivut 615-621. https://doi.org/10.4014/jmb.0906.06016

Nevatalo, L 2010, Bioreactor applications utilizing mesophilic sulfate-reducing bacteria for treatment of mine wastewaters at 9-35 oC. Tampere University of Technology. Publication, Vuosikerta. 910, Tampere University of Technology, Tampere.

Nissilä, ME, Lay, C-H & Puhakka, JA 2014, 'Dark fermentative hydrogen production from lignocellulosic hydrolyzates - A review', Biomass & Bioenergy, Vuosikerta. 67, Sivut 145-159. https://doi.org/10.1016/j.biombioe.2014.04.035

Nissilä, ME, Li, Y-C, Wu, S-Y, Lin, C-Y & Puhakka, JA 2012, 'Hydrogenic and methanogenic fermentation of birch and conifer pulps', Applied Energy, Vuosikerta. 100, Nro December, Sivut 58-65. https://doi.org/10.1016/j.apenergy.2012.06.015

Nissilä, ME, Li, Y-C, Wu, S-Y & Puhakka, JA 2012, 'Dark fermentative hydrogen production from neutralized acid hydrolysates of conifer pulp', Applied Biochemistry and Biotechnology, Vuosikerta. 168, Nro 8, Sivut 2160-2169. https://doi.org/10.1007/s12010-012-9925-z

Nissilä, ME, Tähti, HP, Rintala, JA & Puhakka, JA 2011, 'Thermophilic hydrogen production from cellulose with rumen fluid enrichment cultures: Effects of different heat treatments', International Journal of Hydrogen Energy, Vuosikerta. 36, Nro 2, Sivut 1482-1490. https://doi.org/10.1016/j.hydene.2010.11.010

Nissilä, ME, Tähti, HP, Rintala, JA & Puhakka, JA 2011, 'Effects of heat treatment on hydrogen production potential and microbial community of thermophilic compost enrichment cultures', Bioresource Technology, Vuosikerta. 102, Nro 6, Sivut 4501-4506. https://doi.org/10.1016/j.biortech.2010.12.072

Nissilä, ME, Sulonen, MLK & Puhakka, JA 2013, Enrichment of electrogens on xylose from anaerobi digester sample. julkaisussa Proceedings of 13th World Congress on Anaerobic Digestion, 25th-28th June 2013, Santiago de Compostela, Spain. Anaerobic Digestion World Congress, IWA International Water Association.

Nurmi, P, Özkaya, B, Kaksonen, AH, Tuovinen, OH & Puhakka, JA 2010, 'Predictive modelling of Fe(III) precipitation in iron removal process for bioleaching circuits', Bioprocess and Biosystems Engineering, Vuosikerta. 33, Nro 4, Sivut 449-456. https://doi.org/10.1007/s00449-009-0346-5

Nurmi, P, Özkaya, B, Sasaki, K, Kaksonen, AH, Riekkola-Vanhanen, M, Tuovinen, OH & Puhakka, JA 2010, 'Biooxidation and precipitation for iron and sulfate removal from heap bioleaching effluent streams', Hydrometallurgy, Vuosikerta. 101, Nro 1-2, Sivut 7-14. https://doi.org/10.1016/j.hydromet.2009.11.004

Nybond, S, Karp, M & Tammela, P 2013, 'Antimicrobial assay optimization and validation for HTS in 384-well format using a bioluminescent E. coli K-12 strain', European Journal of Pharmaceutical Sciences, Vuosikerta. 49, Nro 4, Sivut 782-789. https://doi.org/10.1016/j.ejps.2013.05.024

Nybond, S, Karp, M, Yrjönen, T & Tammela, P 2015, 'Bioluminescent whole-cell reporter gene assays as screening tools in the identification of antimicrobial natural product extracts', Journal of Microbiological Methods, Vuosikerta. 114, Sivut 54-56. https://doi.org/10.1016/j.mimet.2015.04.014

Nybond, S, Ghemtio, L, Nawrot, DA, Karp, M, Xhaard, H & Tammela, P 2015, 'Integrated in vitro-in silico screening strategy for the discovery of antibacterial compounds', Assay and Drug Development Technologies, Vuosikerta. 13, Nro 1, Sivut 25-33. https://doi.org/10.1089/adt.2014.625

Ojala, J, Wakeman, K, Määttä, K, Tiirola, M & Puhakka, J 2010, 'TEVA-tutkimusprojekti jatkaa tekopohjavesitiedon täydentämistä', Vesitalous, Nro 5, Sivut 22-25.

Okonkwo, O, Lakaniemi, A-M, Santala, V, Karp, M & Mangayil, R 2018, 'Quantitative Real-time PCR Monitoring Dynamics Of Thermotoga Neapolitana In Synthetic Co-Culture For Biohydrogen Production', International Journal of Hydrogen Energy, Vuosikerta. 43, Nro 6, Sivut 3133-3141. https://doi.org/10.1016/j.ijhydene.2017.12.002

Özkaya, B, Cetinkaya, AY, Cakmakci, M, Karadag, D & Sahinkaya, E 2013, 'Electricity generation from young landfill leachate in a microbial fuel cell with a new electrode material', Bioprocess and Biosystems Engineering, Vuosikerta. 36, Nro 4, Sivut 399-405. https://doi.org/10.1007/s00449-012-0796-z

Özkaya, B, Akoglu, B, Karadag, D, Aci, G, Taskan, E & Hasar, H 2012, 'Bioelectricity production using a new electrode in a microbial fuel cell', Bioprocess and Biosystems Engineering, Vuosikerta. 35, Nro 7, Sivut 1219-1227. https://doi.org/10.1007/s00449-012-0709-1

Papirio, S, Ylinen, A, Zou, G, Peltola, M, Esposito, G & Puhakka, JA 2013, 'Fluidized-bed denitrification for mine waters. Part I: low pH and temperature operation', BIODEGRADATION, Sivut 1-11. https://doi.org/10.1007/s10532-013-9671-0

Papirio, S, Zou, G, Ylinen, A, Di Capua, F, Pirozzi, F & Puhakka, JA 2014, 'Effect of arsenic on nitrification of simulated mining water', Bioresource Technology, Vuosikerta. 164, Sivut 149-154. https://doi.org/10.1016/j.biortech.2014.04.072

Papirio, S 2012, Fluidized-bed bioreactor applications for the treatment of metal-, sulfate- and nitrate-contaminated mine waters. Università degli Studi di Cassino e del Lazio Meridionale, Università degli Studi di Cassino e del Lazio Meridionale.

Pikkemaat, MG, Rapallini, MLBA, Karp, MT & Elferink, JWA 2010, 'Application of a luminescent bacterial biosensor for the detection of tetracyclines in routine analysis of poultry muscle samples', Food Additives and Contaminants Part A: Chemistry Analysis Control Exposure and Risk Assessment, Vuosikerta. 27, Nro 8, Sivut 1112-1117. https://doi.org/10.1080/19440041003794866

Privalova, E, Rasi, S, Mäki-Arvela, P, Eränen, K, Rintala, J, Murzin, DY & Mikkola, J-P 2013, 'CO2 capture from biogas: absorbent selection', RSC Advances, Vuosikerta. 3, Nro 9, Sivut 2979-2994. https://doi.org/10.1039/C2RA23013E

Puhakka, J 2011, IEA-HIA Task Semiannual Report 2010 from Finland. IEA.

Puhakka, JA, Karadag, D & Nissilä, ME 2012, 'Comparison of mesophilic and thermophilic anaerobic hydrogen production by hot spring enrichment culture', International Journal of Hydrogen Energy, Vuosikerta. 37, Nro 21, Sivut 16453-16459. https://doi.org/10.1016/j.ijhydene.2012.02.121

Raghuwanshi, S, Deswal, D, Karp, M & Kuhad, RC 2014, 'Bioprocessing of enhanced cellulase production from a mutant of Trichoderma asperellum RCK2011 and its application in hydrolysis of cellulose', Fuel, Vuosikerta. 124, Sivut 183-189. https://doi.org/10.1016/j.fuel.2014.01.107

Rasi, S, Seppälä, M & Rintala, J 2013, 'Organic silicon compounds in biogases produced from grass silage, grass and maize in laboratory batch assays', Energy, Vuosikerta. 52, Sivut 137-142. https://doi.org/10.1016/j.energy.2013.01.015

Rasi, S, Läntelä, J & Rintala, J 2014, 'Upgrading landfill gas using a high pressure water absorption process', Fuel, Vuosikerta. 115, Sivut 539-543. https://doi.org/10.1016/j.fuel.2013.07.082

Rismani-Yazdi, H, Carver, SM, Christy, AD, Yu, Z, Bibby, K, Peccia, J & Tuovinen, OH 2013, 'Suppression of methanogenesis in cellulose-fed microbial fuel cells in relation to performance, metabolite formation, and microbial population', Bioresource Technology, Vuosikerta. 129, Sivut 281-288. https://doi.org/10.1016/j.biortech.2012.10.137

Rosholm, T, Gois, PMP, Franzen, R & R. Candeias, N 2015, 'Glycerol as an Efficient Medium for the Petasis Borono-Mannich Reaction', Chemistryopen, Vuosikerta. 4, Nro 1, Sivut 39-46. https://doi.org/10.1002/open.201402066

Ryynänen, T, Pekkanen-Mattila, M, Shah, D, Kreutzer, J, Kallio, P, Lekkala, J & Aalto-Setälä, K 2018, 'Microelectrode array for noninvasive analysis of cardiomyocytes at the single-cell level', Japanese Journal of Applied Physics, Vuosikerta. 57, Nro 11, 117001. https://doi.org/10.7567/JJAP.57.117001

Salmela, M, Sanmark, H, Efimova, E, Efimov, A, Hytönen, VP, Lamminmäki, U, Santala, S & Santala, V 2018, 'Molecular tools for selective recovery and detection of lignin-derived molecules', Green Chemistry, Vuosikerta. 20, Nro 12, Sivut 2829-2839. https://doi.org/10.1039/c8gc00490k

Santala, S, Efimova, E, Karp, M & Santala, V 2011, 'Real-Time monitoring of intracellular wax ester metabolism', Microbial Cell Factories, Vuosikerta. 10, Nro 1, 75, Sivut 1-8. https://doi.org/10.1186/1475-2859-10-75

Santala, S 2015, Developing Synthetic Biology Tools and Model Chassis: Production of Bioenergy and High-Value Molecules. Tampere University of Technology. Publication, Vuosikerta. 1288, Tampere University of Technology.

Santala, S, Larjo, A, Aho, T, Karp, M & Santala, V 2011, Construction and Modelling of an Artificial Microecosystem. julkaisussa H Koeppl, J Acimovic, J Kesseli, T Mäki-Marttunen, A Larjo & O Yli-Harja (toim), Eight International Workshop on Computational Systems Biology, WCSB 2011, June 6-8, Zurich, Switzerland. TICSP series. International Workshop on Computational Systems Biology WCSB, Nro 57, WCSB 2011, Zurich, Sivut 225-225.

Santala, S, Karp, M & Santala, V 2012, 'Monitoring alkane degradation by single biobrick integration to an optimal cellular framework', ACS Synthetic Biology, Vuosikerta. 1, Nro 2, Sivut 60-64. https://doi.org/10.1021/sb2000066

Santala, S, Karp, M & Santala, V 2014, 'Rationally engineered synthetic coculture for improved biomass and product formation', PLoS ONE, Vuosikerta. 9, Nro 12, e113786. https://doi.org/10.1371/journal.pone.0113786

Santala, S, Efimova, E, Kivinen, V, Larjo, A, Aho, T, Karp, M & Santala, V 2011, 'Improved triacylglycerol production in Acinetobacter baylyi ADP1 by metabolic engineering', Microbial Cell Factories, Vuosikerta. 10, Nro 36, Sivut 1-10. https://doi.org/10.1186/1475-2859-10-36

Santala, S, Efimova, E, Koskinen, P, Karp, MT & Santala, V 2014, 'Rewiring the wax ester production pathway of acinetobacter baylyi ADP1', ACS Synthetic Biology, Vuosikerta. 3, Nro 3, Sivut 145-151. https://doi.org/10.1021/sb4000788

Santala, S, Efimova, E & Santala, V 2018, 'Dynamic decoupling of biomass and wax ester biosynthesis in Acinetobacter baylyi by an autonomously regulated switch', Metabolic Engineering Communications, Vuosikerta. 7, e00078. https://doi.org/10.1016/j.mec.2018.e00078

Sasaki, K, Takatsugi, K, Kaneko, K, Kozai, N, Ohnuki, T, Tuovinen, OH & Hirajima, T 2010, 'Characterization of secondary arsenic-bearing precipitates formed in the bioleaching of enargite by Acidithiobacillus ferrooxidans', Hydrometallurgy, Vuosikerta. 104, Nro 3-4, Sivut 424-431. https://doi.org/10.1016/j.hydromet.2009.12.012

Seppälä, J, Larjo, A, Aho, T, Kivistö, A, Karp, M & Santala, VI 2013, Modification of the Escherichia coli metabolic model LAF1260 based on anaerobic experiments. julkaisussa R Autio, I Shmulevich, K Strimmer, C Wiuf, S Sarbu & O Yli-Harja (toim), The 10th International Workshop on Computational Systems Biology, WCSB 2013, June 10-12, Tampere, Finland. International Workshop on Computational Systems Biology, Sivut 80-86.

Seppälä, JJ, Larjo, A, Aho, T, Yli-Harja, O, Karp, MT & Santala, V 2013, 'Prospecting hydrogen production of Escherichia coli by metabolic network modeling', International Journal of Hydrogen Energy, Vuosikerta. 38, Nro 27, Sivut 11780-11789. https://doi.org/10.1016/j.ijhydene.2013.07.002

Seppälä, M, Laine, A & Rintala, J 2013, 'Screening of novel plants for biogas production in northern conditions', Bioresource Technology, Vuosikerta. 139, Sivut 355-362. https://doi.org/10.1016/j.biortech.2013.04.014

Seppälä, M, Pyykkönen, V, Väisänen, A & Rintala, J 2013, 'Biomethane production from maize and liquid cow manure - Effect of share of maize, post-methanation potential and digestate characteristics', Fuel, Vuosikerta. 107, Sivut 209-216. https://doi.org/10.1016/j.fuel.2012.12.069

Seppälä, M, Pyykkönen, V, Laine, A & Rintala, J 2012, 'Methane production from maize in Finland - Screening for different maize varieties and plant parts', Biomass & Bioenergy, Vuosikerta. 46, Nro November, Sivut 282-290. https://doi.org/10.1016/j.biombioe.2012.08.016

Seppälä, JJ, Puhakka, JA, Yli-Harja, O, Karp, MT & Santala, V 2011, 'Fermentative hydrogen production by Clostridium butyricum and Escherichia coli in pure and cocultures', International Journal of Hydrogen Energy, Vuosikerta. 36, Nro 17, Sivut 10701-10708. https://doi.org/10.1016/j.ijhydene.2011.05.189

Seppälä, J 2014, Application of Computational Methods for Fermentative Hydrogen Production. Tampere University of Techonology. Publication, Vuosikerta. 1191, Tampere University of Technology.

Sharma, KK, Sharma, S, Karp, M & Kuhad, RC 2012, 'Ligninolytic enzymes improve soil DNA purity: Solution to methodological challenges of soil metagenomics', Journal of Molecular Catalysis B: Enzymatic, Vuosikerta. 83, Nro November, Sivut 73-79. https://doi.org/10.1016/j.molcatb.2012.07.010

Singh Gaur, R, Cai, L, Tuovinen, OH & Mancl, KM 2010, 'Pretreatment of turkey fat-containing wastewater in coarse sand and gravel/coarse sand bioreactors', Bioresource Technology, Vuosikerta. 101, Nro 3, Sivut 1106-1110. https://doi.org/10.1016/j.biortech.2009.08.078

Sippola, RJ, Hadipour, A, Kastinen, T, Vivo, P, Hukka, TI, Aernouts, T & Heiskanen, JP 2017, 'Carbazole-based small molecule electron donors: Syntheses, characterization, and material properties', Dyes and Pigments, Vuosikerta. 150, j.dyepig.2017.11.014, Sivut 79-88. https://doi.org/10.1016/j.dyepig.2017.11.014

Sivula, L, Oikari, A & Rintala, J 2012, 'Toxicity of waste gasification bottom ash leachate', Waste Management, Vuosikerta. 32, Nro 6, Sivut 1171-1178. https://doi.org/10.1016/j.wasman.2012.01.002

Sivula, L, Sormunen, K & Rintala, J 2012, 'Leachate formation and characteristics from gasification and grate incineration bottom ash under landfill conditions', Waste Management, Vuosikerta. 32, Nro 4, Sivut 780-788. https://doi.org/10.1016/j.wasman.2011.11.012

Smolander, O-P, Kandhavelu, M, Mannerström, H, Lihavainen, E, Kalaichelvan, S, Healy, S, Yli-Harja, O, Karp, M & Ribeiro, AS 2011, 'Cell-to-cell diversity in protein levels of a gene driven by a tetracycline inducible promoter', BMC Molecular Biology, Vuosikerta. 12, 21, Sivut 1-27. https://doi.org/10.1186/1471-2199-12-21

Smolander, O-P, Kandhavelu, M, Mannerström, H, Lihavainen, E, Kalaichelvan, S, Healy, S, Yli-Harja, O, Karp, M & Ribeiro, AS 2011, Dynamics of Gene Expression under Tetracycline Inducible Promoters. julkaisussa H Koeppl, J Acimovic, J Kesseli, T Mäki-Marttunen, A Larjo & O Yli-Harja (toim), Eight International Workshop on Computational Systems Biology, WCSB 2011, June 6-8, Zurich, Switzerland. TICSP series. International Workshop on Computational Systems Biology WCSB, Nro 57, WCSB 2011, Zurich, Sivut 227-227.

Sormunen, K, Laurila, T & Rintala, J 2013, 'Determination of waste decay rate for a large Finnish landfill by calibrating methane generation models on the basis of methane recovery and emissions', Waste Management and Research, Vuosikerta. 31, Nro 10, Sivut 979-985. https://doi.org/10.1177/0734242X13490980

Stuani, L, Lechaplais, C, Salminen, AV, Segurens, B, Durot, M, Castelli, V, Pinet, A, Labadie, K, Cruveiller, S, Weissenbach, J, de Berardinis, V, Salanoubat, M & Perret, A 2014, 'Novel metabolic features in Acinetobacter baylyi ADP1 revealed by a multiomics approach', Metabolomics. https://doi.org/10.1007/s11306-014-0662-x

Suominen, AI, Karp, MT & Mäntsälä, PI 1984, 'Fractionation of DNA with Sephacryl S-1000(R)', Biochemistry Research International, Vuosikerta. 8, Nro 2, Sivut 209-215.

Sutinen, M, Kontunen, A, Karjalainen, M, Kiiski, J, Hannus, J, Tolonen, T, Roine, A & Oksala, N 2019, 'Identification of breast tumors from diathermy smoke by differential ion mobility spectrometry', European Journal of Surgical Oncology, Vuosikerta. 45, Nro 2, Sivut 141-146. https://doi.org/10.1016/j.ejso.2018.09.005

Tähti, H, Kaparaju, P & Rintala, J 2013, 'Hydrogen and methane production in extreme thermophilic conditions in two-stage (upflow anaerobic sludge bed) UASB reactor system', International Journal of Hydrogen Energy, Vuosikerta. 38, Nro 12, Sivut 4997-5002. https://doi.org/10.1016/j.ijhydene.2013.02.058

Tampio, E, Marttinen, S & Rintala, J 2016, 'Liquid fertilizer products from anaerobic digestion of food waste: Mass, nutrient and energy balance of four digestate liquid treatment systems', Journal of Cleaner Production, Vuosikerta. 125, Sivut 22–32. https://doi.org/10.1016/j.jclepro.2016.03.127

Tao, J, Mancl, KM & Tuovinen, OH 2010, 'Attenuation of pollutants in sanitary sewer overflow: Comparative evaluation of treatment with fixed media bioreactors', Bioresource Technology, Vuosikerta. 101, Nro 6, Sivut 1781-1786. https://doi.org/10.1016/j.biortech.2009.10.038

Tarniceriu, A, Harju, J, Yousefi, ZR, Vehkaoja, A, Parak, J, Yli-Hankala, A & Korhonen, I 2018, The Accuracy of Atrial Fibrillation Detection from Wrist Photoplethysmography. A Study on Post-Operative Patients. julkaisussa 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018. Vuosikerta. 2018-July, 8513197, IEEE, Sivut 4844-4847, 18/07/18. https://doi.org/10.1109/EMBC.2018.8513197

Taskan, E, Özkaya, B & Hasar, H 2015, 'Combination of a novel electrode material and artificial mediators to enhance power generation in an MFC', Water Science and Technology, Vuosikerta. 71, Nro 3, Sivut 320-328. https://doi.org/10.2166/wst.2014.487

Tauriainen, SM, Virta, MPJ & Karp, MT 2000, 'Detecting bioavailable toxic metals and metalloids from natural water samples using luminescent sensor bacteria', Water Research, Vuosikerta. 34, Nro 10, Sivut 2661-2666. https://doi.org/10.1016/S0043-1354(00)00005-1

Taverniti, V, Minuzzo, M, Arioli, S, Junttila, I, Hämäläinen, S, Turpeinen, H, Mora, D, Karp, M, Pesu, M & Guglielmetti, S 2012, 'In Vitro functional and immunomodulatory properties of the Lactobacillus helveticus MIMLh5-Streptococcus salivarius ST3 association that are relevant to the development of a Pharyngeal probiotic product', Applied and Environmental Microbiology, Vuosikerta. 78, Nro 12, Sivut 4209-4216. https://doi.org/10.1128/AEM.00325-12

Taverniti, V, Stuknyte, M, Minuzzo, M, Arioli, S, De Noni, I, Scabiosi, C, Cordova, ZM, Junttila, I, Hämäläinen, S, Turpeinen, H, Mora, D, Karp, M, Pesu, M & Guglielmetti, S 2013, 'S-Layer protein mediates the stimulatory effect of lactobacillus helveticus MIMLh5 on innate immunity', Applied and Environmental Microbiology, Vuosikerta. 79, Nro 4, Sivut 1221-1231. https://doi.org/10.1128/AEM.03056-12

Tienaho, J, Sarjala, T, Franzén, R & Karp, M 2015, 'Method with high-throughput screening potential for antioxidative substances using Escherichia coli biosensor katG'::lux', Journal of Microbiological Methods, Vuosikerta. 118, 4723, Sivut 78-80. https://doi.org/10.1016/j.mimet.2015.08.018

Tienaho, J, Poikulainen, E, Sarjala, T, Muilu-Mäkelä, R, Santala, V & Karp, M 2018, 'A Bioscreening Technique for Ultraviolet Irradiation Protective Natural Substances', Photochemistry and Photobiology, Vuosikerta. 94, Nro 6, Sivut 1273-1280. https://doi.org/10.1111/php.12954

Tolvanen, K 2010, Molecular methods for studying mixed hydrogen-fermenting microbial communities. Tampereen teknillinen yliopisto. Julkaisu, Vuosikerta. 911, Tampere University of Technology, Tampere.

Tolvanen, KES & Karp, MT 2011, 'Molecular methods for characterizing mixed microbial communities in hydrogen-fermenting systems', International Journal of Hydrogen Energy, Vuosikerta. 36, Nro 9, Sivut 5280-5288. https://doi.org/10.1016/j.ijhydene.2011.01.029

Tolvanen, KES, Mangayil, RK, Karp, MT & Santala, VP 2011, 'Simple enrichment system for hydrogen producers', Applied and Environmental Microbiology, Vuosikerta. 77, Nro 12, Sivut 4246-4248. https://doi.org/10.1128/AEM.05150-11

Tolvanen, KES, Santala, VP & Karp, MT 2010, '[FeFe]-hydrogenase gene quantification and melting curve analysis from hydrogen-fermenting bioreactor samples', International Journal of Hydrogen Energy, Vuosikerta. 35, Nro 8, Sivut 3433-3439. https://doi.org/10.1016/j.ijhydene.2010.01.132

Tolvanen, H, Keipi, T & Raiko, R 2016, 'A study on raw, torrefied, and steam-exploded wood: Fine grinding, drop-tube reactor combustion tests in N2/O2 and CO2/O2 atmospheres, particle geometry analysis, and numerical kinetics modeling', Fuel, Vuosikerta. 176, Sivut 153-164. https://doi.org/10.1016/j.fuel.2016.02.071

Välimaa, A-L, Kivistö, AT, Leskinen, PI & Karp, MT 2010, 'A novel biosensor for the detection of zearalenone family mycotoxins in milk', Journal of Microbiological Methods, Vuosikerta. 80, Nro 1, Sivut 44-48. https://doi.org/10.1016/j.mimet.2009.10.017

Välimaa, A-L 2010, In vitro bioassays in bioactivity and residue assessments. Tampereen teknillinen yliopisto. Julkaisu, Vuosikerta. 933, Tampere University of Technology, Tampere.

Vestola, EA, Kuusenaho, MK, Närhi, HM, Tuovinen, OH, Puhakka, JA, Plumb, JJ & Kaksonen, AH 2010, 'Acid bioleaching of solid waste materials from copper, steel and recycling industries', Hydrometallurgy, Vuosikerta. 103, Nro 1-4, Sivut 74-79. https://doi.org/10.1016/j.hydromet.2010.02.017

Virolainen, N & Välimaa, A-L 2010, Kehittämishanke: Tenttiin lukemisesta jatkuvaan oppimiseen - Tapausesimerkkinä Tampereen teknillisen yliopiston Nanobioteknologian opintojakso. julkaisussa P Rutanen, A Rahkonen & S Jutila (toim), Tunnista, kehitä, arvioi - vaikuttavia käytäntöjä opetuksen ja opetussuunnitelman kehittämiseen. Uutisia opetuksen kehittämisestä Oulun yliopiston laitoksilla. Sivut 33-40.

Virolainen, N, Guglielmetti, S, Arioli, S & Karp, M 2012, 'Bioluminescence-based identification of nisin producers - A rapid and simple screening method for nisinogenic bacteria in food samples', International Journal of Food Microbiology, Vuosikerta. 158, Nro 12, Sivut 126-132. https://doi.org/10.1016/j.ijfoodmicro.2012.07.007

Virolainen, N & Karp, M 2014, Biosensors, Antibiotics and Food. julkaisussa G Thouand & R Marks (toim), Bioluminescence: Fundamentals and Applications in Biotechnology - Volume 2. Advances in biochemical engineering : biotechnology, Vuosikerta. 145, Springer, Sivut 153-185. https://doi.org/10.1007/978-3-662-43619-6_5

Wakeman, KD, Erving, L, Riekkola-Vanhanen, ML & Puhakka, JA 2010, 'Silage supports sulfate reduction in the treatment of metals- and sulfate-containing waste waters', Water Research, Vuosikerta. 44, Nro 17, Sivut 4932-4939. https://doi.org/10.1016/j.watres.2010.07.025

Wakeman, KD, Honkavirta, P & Puhakka, JA 2011, 'Bioleaching of flotation by-products of talc production permits the separation of nickel and cobalt from iron and arsenic', Process Biochemistry, Vuosikerta. 46, Sivut 1589-1598. https://doi.org/10.1016/j.procbio.2011.04.016

Wang, H, Tolvanen, K, Lehtomäki, A, Puhakka, J & Rintala, J 2010, 'Microbial community structure in anaerobic co-digestion of grass silage and cow manure in a laboratory continuously stirred tank reactor', BIODEGRADATION, Vuosikerta. 21, Nro 1, Sivut 135-146. https://doi.org/10.1007/s10532-009-9288-5

Warwick, MEA, Kaunisto, K, Barreca, D, Carraro, G, Gasparotto, A, Maccato, C, Bontempi, E, Sada, C, Ruoko, T-P, Turner, S & Van Tendeloo, G 2015, 'Vapor phase processing of α-Fe2O3 photoelectrodes for water splitting: An insight into the structure/property interplay', ACS Applied Materials and Interfaces, Vuosikerta. 7, Nro 16, Sivut 8667-8676. https://doi.org/10.1021/acsami.5b00919

Warwick, MEA, Barreca, D, Bontempi, E, Carraro, G, Gasparotto, A, Maccato, C, Kaunisto, K, Ruoko, T-P, Lemmetyinen, H, Sada, C, Goenuellue, Y & Mathur, S 2015, 'Pt-functionalized Fe2O3 photoanodes for solar water splitting: the role of hematite nano-organization and the platinum redox state', Physical Chemistry Chemical Physics, Vuosikerta. 17, Nro 19, Sivut 12899-12907. https://doi.org/10.1039/c5cp01636c

Zou, G, Zengling, W, Xiaokang, L, Laichang, Z, Renman, R, Papirio, S & Puhakka, J 2013, 'Column bioleaching of low grade copper sulfide ore at extreme conditions for most mineral processing bacteria', Advanced Materials Research, Vuosikerta. 825, Sivut 318-321. https://doi.org/10.4028/www.scientific.net/AMR.825.318

Zou, G, Ylinen, A, Di Capua, F, Papirio, S, Lakaniemi, A-M & Puhakka, J 2013, 'Impact of heavy metals on denitrification of simulated mining wastewaters', Advanced Materials Research, Vuosikerta. 825, Sivut 500-503. https://doi.org/10.4028/www.scientific.net/AMR.825.500

Zou, G, Papirio, S, Ylinen, A, Di Capua, F, Lakaniemi, AM & Puhakka, JA 2014, 'Fluidized-bed denitrification for mine waters. Part II: effects of Ni and Co', BIODEGRADATION, Vuosikerta. 25, Sivut 417-423. https://doi.org/10.1007/s10532-013-9670-1

Zou, G, Papirio, S, Lai, X, Wu, Z, Zou, L, Puhakka, J & Ruan, R 2015, 'Column leaching of low-grade sulfide ore from Zijinshan copper mine', International Journal of Mineral Processing, Vuosikerta. 139, 2730, Sivut 11-16. https://doi.org/10.1016/j.minpro.2015.04.005