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Hegele LA, Scagliarini A, Sbragaglia M, Mattila KK, Philippi PC, Puleri DF, Gounley J, Randles A. 2018. High-Reynolds-number turbulent cavity flow using the lattice Boltzmann method. Physical Review E. 98(4).

Kartasalo K, Latonen L, Vihinen J, Visakorpi T, Nykter M, Ruusuvuori P. 2018. Comparative analysis of tissue reconstruction algorithms for 3D histology. Bioinformatics. 34(17):3013-3021.

Alberucci A, Laudyn UA, Piccardi A, Kwasny M, Klus B, Karpierz MA, Assanto G. 2017. Nonlinear continuous-wave optical propagation in nematic liquid crystals: Interplay between reorientational and thermal effects. Physical Review E. 96(1).

Stupnikov A, Tripathi S, De Matos Simoes R, McArt D, Salto-Tellez M, Glazko G, Dehmer M, Emmert-Streib F. 2016. SamExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files. Bioinformatics. 32(21):3345-3347.

Palyulin VV, Chechkin AV, Klages R, Metzler R. 2016. Search reliability and search efficiency of combined Lévy-Brownian motion: Long relocations mingled with thorough local exploration. Journal of Physics A: Mathematical and Theoretical. 49(39).

Luukko PJJ, Helske J, Räsänen E. 2016. Introducing libeemd: a program package for performing the ensemble empirical mode decomposition. Computational Statistics. 31(2):545-557.

Häkkinen A, Ribeiro AS. 2016. Characterizing rate limiting steps in transcription from RNA production times in live cells. Bioinformatics. 32(9):1346-1352.

Aho V, Mattila K, Kühn T, Kekäläinen P, Pulkkinen O, Minussi RB, Vihinen-Ranta M, Timonen J. 2016. Diffusion through thin membranes: Modeling across scales. Physical Review E. 93(4).

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Larjo A, Lähdesmäki H. 2015. Using multi-step proposal distribution for improved MCMC convergence in Bayesian network structure learning. Eurasip Journal on Bioinformatics and Systems Biology. 2015(1).

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Mahmoudvand R, Alehosseini F, Rodrigues PC. 2015. Forecasting mortality rate by singular spectrum analysis. REVSTAT STATISTICAL JOURNAL. 13(3):193-206.

Safdari H, Cherstvy AG, Chechkin AV, Thiel F, Sokolov IM, Metzler R. 2015. Quantifying the non-ergodicity of scaled Brownian motion. Journal of Physics A: Mathematical and Theoretical. 48(37).

Devassy L, Jisha CP, Alberucci A, Kuriakose VC. 2015. Parity-time-symmetric solitons in trapped Bose-Einstein condensates and the influence of varying complex potentials: A variational approach. Physical Review E. 92(2).

Krüsemann H, Godec A, Metzler R. 2015. Ageing first passage time density in continuous time random walks and quenched energy landscapes. Journal of Physics A: Mathematical and Theoretical. 48(28).

Godec A, Metzler R. 2015. Signal focusing through active transport. Physical Review E. 92(1).

Rodrigues PC, Monteiro A, Lourenço VM. 2015. A robust AMMI model for the analysis of genotype-by-environment data. Bioinformatics. 32(1):58-66.

Mattila KK, Hegele LA, Philippi PC. 2015. Investigation of an entropic stabilizer for the lattice-Boltzmann method. Physical Review E. 91(6).

Godec A, Metzler R. 2015. Optimization and universality of Brownian search in a basic model of quenched heterogeneous media. Physical Review E. 91(5).

Cherstvy AG, Metzler R. 2015. Ergodicity breaking, ageing, and confinement in generalized diffusion processes with position and time dependent diffusivity. Journal of Statistical Mechanics: Theory and Experiment. 2015(5).

Safdari H, Chechkin AV, Jafari GR, Metzler R. 2015. Aging scaled Brownian motion. Physical Review E. 91(4).

Blavatska V, Metzler R. 2015. Conformational properties of complex polymers: Rosette versus star-like structures. Journal of Physics A: Mathematical and Theoretical. 48(13).

Subramaniyam NP, Hyttinen J. 2015. Dynamics of intracranial electroencephalographic recordings from epilepsy patients using univariate and bivariate recurrence networks. Physical Review E. 91(2).

Häkkinen A, Ribeiro AS. 2015. Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data. Bioinformatics. 31(1):69-75.

Yang Z, Peltonen J, Kaski S. 2015. Majorization-minimization for manifold embedding. Journal of Machine Learning Research. 38:1088-1097.

Tripathi S, Dehmer M, Emmert-Streib F. 2014. NetBioV: An R package for visualizing large network data in biology and medicine. Bioinformatics. 30(19):2834-2836.

Rahmatallah Y, Emmert-Streib F, Glazko G. 2014. Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets. Bioinformatics. 30(3):360-368.

Rodrigues PC, Moreira EE, Jesus VM, Mexia JT. 2014. Structured orthogonal families of one and two strata prime basis factorial models. Statistical Papers. 55(3):603-614.

Peltonen J, Lin Z. 2013. Information retrieval perspective to meta-visualization. Journal of Machine Learning Research. 29:165-180.

Rahmatallah Y, Emmert-Streib F, Glazko G. 2012. Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses. Bioinformatics. 28(23):3073-3080.

Pereira DG, Rodrigues PC, Mejza S, Mexia JT. 2012. A comparison between joint regression analysis and the AMMI model: A case study with barley. JOURNAL OF STATISTICAL COMPUTATION AND SIMULATION. 82(2):193-207.

Wu GHM, Auvinen A, Yen AMF, Hakama M, Walter SD, Chen HH. 2012. A stochastic model for survival of early prostate cancer with adjustments for leadtime, length bias, and over-detection. Biometrical Journal. 54(1):20-44.

Pearlman A, Campbell C, Brooks E, Genshaft A, Shajahan S, Ittman M, Bova GS, Melamed J, Holcomb I, Schneider RJ, Ostrer H. 2012. Clustering-based method for developing a genomic copy number alteration signature for predicting the metastatic potential of prostate cancer. JOURNAL OF PROBABILITY AND STATISTICS.

Assanto G, Marchant TR, Minzoni AA, Smyth NF. 2011. Reorientational versus Kerr dark and gray solitary waves using modulation theory. Physical Review E. 84(6).

Yu G, Zhang B, Bova GS, Xu J, Shih IM, Wang Y. 2011. BACOM: In silico detection of genomic deletion types and correction of normal cell contamination in copy number data. Bioinformatics. 27(11):1473-1480.

Potapov I, Volkov E, Kuznetsov A. 2011. Dynamics of coupled repressilators: The role of mRNA kinetics and transcription cooperativity. Physical Review E. 83(3).

Peltonen J, Kaski S. 2011. Generative modeling for maximizing precision and recall in information visualization. Journal of Machine Learning Research. 15:579-587.

Altay G, Emmert-Streib F. 2010. Revealing differences in gene network inference algorithms on the network level by ensemble methods. Bioinformatics. 26(14):1738-1744.

Emmert-Streib F. 2010. Exploratory analysis of spatiotemporal patterns of cellular automata by clustering compressibility. Physical Review E. 81(2).

Glazko GV, Emmert-Streib F. 2009. Unite and conquer: Univariate and multivariate approaches for finding differentially expressed gene sets. Bioinformatics. 25(18):2348-2354.

Emmert-Streib F, Dehmer M. 2009. Fault tolerance of information processing in gene networks. Physica A: Statistical Mechanics and Its Applications. 388(4):541-548.

Knuuti M, Länsivaara T. 2019. Performance of Variable Partial Factor approach in a slope design. teoksessa 13th International Conference on Applications of Statistics and Probability in Civil Engineering(ICASP13), Seoul, South Korea, May 26-30, 2019.