Martins, L, Neeli-Venkata, R, Oliveira, SMD, Häkkinen, A, Ribeiro, AS & Fonseca, JM 2018, 'SCIP: a single-cell image processor toolbox', Bioinformatics, Vuosikerta. 34, Nro 24, Sivut 4318-4320.

Hegele, LA, Scagliarini, A, Sbragaglia, M, Mattila, KK, Philippi, PC, Puleri, DF, Gounley, J & Randles, A 2018, 'High-Reynolds-number turbulent cavity flow using the lattice Boltzmann method', Physical Review E, Vuosikerta. 98, Nro 4, 043302.

Kartasalo, K, Latonen, L, Vihinen, J, Visakorpi, T, Nykter, M & Ruusuvuori, P 2018, 'Comparative analysis of tissue reconstruction algorithms for 3D histology', Bioinformatics, Vuosikerta. 34, Nro 17, Sivut 3013-3021.

Alberucci, A, Laudyn, UA, Piccardi, A, Kwasny, M, Klus, B, Karpierz, MA & Assanto, G 2017, 'Nonlinear continuous-wave optical propagation in nematic liquid crystals: Interplay between reorientational and thermal effects', Physical Review E, Vuosikerta. 96, Nro 1, 012703.

Stupnikov, A, Tripathi, S, De Matos Simoes, R, McArt, D, Salto-Tellez, M, Glazko, G, Dehmer, M & Emmert-Streib, F 2016, 'SamExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files', Bioinformatics, Vuosikerta. 32, Nro 21, Sivut 3345-3347.

Palyulin, VV, Chechkin, AV, Klages, R & Metzler, R 2016, 'Search reliability and search efficiency of combined Lévy-Brownian motion: Long relocations mingled with thorough local exploration', Journal of Physics A: Mathematical and Theoretical, Vuosikerta. 49, Nro 39, 394002.

Luukko, PJJ, Helske, J & Räsänen, E 2016, 'Introducing libeemd: a program package for performing the ensemble empirical mode decomposition', Computational Statistics, Vuosikerta. 31, Nro 2, Sivut 545-557.

Häkkinen, A & Ribeiro, AS 2016, 'Characterizing rate limiting steps in transcription from RNA production times in live cells', Bioinformatics, Vuosikerta. 32, Nro 9, Sivut 1346-1352.

Aho, V, Mattila, K, Kühn, T, Kekäläinen, P, Pulkkinen, O, Minussi, RB, Vihinen-Ranta, M & Timonen, J 2016, 'Diffusion through thin membranes: Modeling across scales', Physical Review E, Vuosikerta. 93, Nro 4, 043309.

Ropo, M, Schneider, M, Baldauf, C & Blum, V 2016, 'First-principles data set of 45,892 isolated and cation-coordinated conformers of 20 proteinogenic amino acids', Scientific Data, Vuosikerta. 3, 160009.

Larjo, A & Lähdesmäki, H 2015, 'Using multi-step proposal distribution for improved MCMC convergence in Bayesian network structure learning', Eurasip Journal on Bioinformatics and Systems Biology, Vuosikerta. 2015, Nro 1, 6.

Bencheikh, K & Räsänen, E 2015, 'Hermitian one-particle density matrix through a semiclassical gradient expansion', Journal of Physics A: Mathematical and Theoretical, Vuosikerta. 49, Nro 1, 015205.

Mahmoudvand, R, Alehosseini, F & Rodrigues, PC 2015, 'Forecasting mortality rate by singular spectrum analysis', REVSTAT STATISTICAL JOURNAL, Vuosikerta. 13, Nro 3, Sivut 193-206.

Safdari, H, Cherstvy, AG, Chechkin, AV, Thiel, F, Sokolov, IM & Metzler, R 2015, 'Quantifying the non-ergodicity of scaled Brownian motion', Journal of Physics A: Mathematical and Theoretical, Vuosikerta. 48, Nro 37, 375002.

Devassy, L, Jisha, CP, Alberucci, A & Kuriakose, VC 2015, 'Parity-time-symmetric solitons in trapped Bose-Einstein condensates and the influence of varying complex potentials: A variational approach', Physical Review E, Vuosikerta. 92, Nro 2, 022914.

Krüsemann, H, Godec, A & Metzler, R 2015, 'Ageing first passage time density in continuous time random walks and quenched energy landscapes', Journal of Physics A: Mathematical and Theoretical, Vuosikerta. 48, Nro 28, 285001.

Godec, A & Metzler, R 2015, 'Signal focusing through active transport', Physical Review E, Vuosikerta. 92, Nro 1, 010701.

Rodrigues, PC, Monteiro, A & Lourenço, VM 2015, 'A robust AMMI model for the analysis of genotype-by-environment data', Bioinformatics, Vuosikerta. 32, Nro 1, Sivut 58-66.

Mattila, KK, Hegele, LA & Philippi, PC 2015, 'Investigation of an entropic stabilizer for the lattice-Boltzmann method', Physical Review E, Vuosikerta. 91, Nro 6, 063010.

Godec, A & Metzler, R 2015, 'Optimization and universality of Brownian search in a basic model of quenched heterogeneous media', Physical Review E, Vuosikerta. 91, Nro 5, 052134.

Cherstvy, AG & Metzler, R 2015, 'Ergodicity breaking, ageing, and confinement in generalized diffusion processes with position and time dependent diffusivity', Journal of Statistical Mechanics: Theory and Experiment, Vuosikerta. 2015, Nro 5, P05010.

Safdari, H, Chechkin, AV, Jafari, GR & Metzler, R 2015, 'Aging scaled Brownian motion', Physical Review E, Vuosikerta. 91, Nro 4, 042107.

Blavatska, V & Metzler, R 2015, 'Conformational properties of complex polymers: Rosette versus star-like structures', Journal of Physics A: Mathematical and Theoretical, Vuosikerta. 48, Nro 13, 135001.

Subramaniyam, NP & Hyttinen, J 2015, 'Dynamics of intracranial electroencephalographic recordings from epilepsy patients using univariate and bivariate recurrence networks', Physical Review E, Vuosikerta. 91, Nro 2, 022927.

Häkkinen, A & Ribeiro, AS 2015, 'Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data', Bioinformatics, Vuosikerta. 31, Nro 1, Sivut 69-75.

Yang, Z, Peltonen, J & Kaski, S 2015, 'Majorization-minimization for manifold embedding', Journal of Machine Learning Research, Vuosikerta. 38, Sivut 1088-1097.

Tripathi, S, Dehmer, M & Emmert-Streib, F 2014, 'NetBioV: An R package for visualizing large network data in biology and medicine', Bioinformatics, Vuosikerta. 30, Nro 19, Sivut 2834-2836.

Rahmatallah, Y, Emmert-Streib, F & Glazko, G 2014, 'Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets', Bioinformatics, Vuosikerta. 30, Nro 3, Sivut 360-368.

Rodrigues, PC, Moreira, EE, Jesus, VM & Mexia, JT 2014, 'Structured orthogonal families of one and two strata prime basis factorial models', Statistical Papers, Vuosikerta. 55, Nro 3, Sivut 603-614.

Peltonen, J & Lin, Z 2013, 'Information retrieval perspective to meta-visualization', Journal of Machine Learning Research, Vuosikerta. 29, Sivut 165-180.

Rahmatallah, Y, Emmert-Streib, F & Glazko, G 2012, 'Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses', Bioinformatics, Vuosikerta. 28, Nro 23, Sivut 3073-3080.

Pereira, DG, Rodrigues, PC, Mejza, S & Mexia, JT 2012, 'A comparison between joint regression analysis and the AMMI model: A case study with barley', JOURNAL OF STATISTICAL COMPUTATION AND SIMULATION, Vuosikerta. 82, Nro 2, Sivut 193-207.

Wu, GHM, Auvinen, A, Yen, AMF, Hakama, M, Walter, SD & Chen, HH 2012, 'A stochastic model for survival of early prostate cancer with adjustments for leadtime, length bias, and over-detection', Biometrical Journal, Vuosikerta. 54, Nro 1, Sivut 20-44.

Pearlman, A, Campbell, C, Brooks, E, Genshaft, A, Shajahan, S, Ittman, M, Bova, GS, Melamed, J, Holcomb, I, Schneider, RJ & Ostrer, H 2012, 'Clustering-based method for developing a genomic copy number alteration signature for predicting the metastatic potential of prostate cancer', JOURNAL OF PROBABILITY AND STATISTICS.

Assanto, G, Marchant, TR, Minzoni, AA & Smyth, NF 2011, 'Reorientational versus Kerr dark and gray solitary waves using modulation theory', Physical Review E, Vuosikerta. 84, Nro 6, 066602.

Yu, G, Zhang, B, Bova, GS, Xu, J, Shih, IM & Wang, Y 2011, 'BACOM: In silico detection of genomic deletion types and correction of normal cell contamination in copy number data', Bioinformatics, Vuosikerta. 27, Nro 11, btr183, Sivut 1473-1480.

Potapov, I, Volkov, E & Kuznetsov, A 2011, 'Dynamics of coupled repressilators: The role of mRNA kinetics and transcription cooperativity', Physical Review E, Vuosikerta. 83, Nro 3, 031901.

Peltonen, J & Kaski, S 2011, 'Generative modeling for maximizing precision and recall in information visualization', Journal of Machine Learning Research, Vuosikerta. 15, Sivut 579-587.

Altay, G & Emmert-Streib, F 2010, 'Revealing differences in gene network inference algorithms on the network level by ensemble methods', Bioinformatics, Vuosikerta. 26, Nro 14, btq259, Sivut 1738-1744.

Emmert-Streib, F 2010, 'Exploratory analysis of spatiotemporal patterns of cellular automata by clustering compressibility', Physical Review E, Vuosikerta. 81, Nro 2, 026103.

Glazko, GV & Emmert-Streib, F 2009, 'Unite and conquer: Univariate and multivariate approaches for finding differentially expressed gene sets', Bioinformatics, Vuosikerta. 25, Nro 18, Sivut 2348-2354.

Emmert-Streib, F & Dehmer, M 2009, 'Fault tolerance of information processing in gene networks', Physica A: Statistical Mechanics and Its Applications, Vuosikerta. 388, Nro 4, Sivut 541-548.

Knuuti, M & Länsivaara, T 2019, Performance of Variable Partial Factor approach in a slope design. julkaisussa 13th International Conference on Applications of Statistics and Probability in Civil Engineering(ICASP13), Seoul, South Korea, May 26-30, 2019., Seoul, Etelä-Korea, 26/05/19.