Martins, Leonardo et al. "SCIP: a single-cell image processor toolbox". Bioinformatics. 2018, 34(24). 4318-4320.

Hegele, L. A. et al. "High-Reynolds-number turbulent cavity flow using the lattice Boltzmann method". Physical Review E. 2018. 98(4).

Kartasalo, Kimmo et al. "Comparative analysis of tissue reconstruction algorithms for 3D histology". Bioinformatics. 2018, 34(17). 3013-3021.

Alberucci, Alessandro et al. "Nonlinear continuous-wave optical propagation in nematic liquid crystals: Interplay between reorientational and thermal effects". Physical Review E. 2017. 96(1).

Stupnikov, Alexey et al. "SamExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files". Bioinformatics. 2016, 32(21). 3345-3347.

Palyulin, Vladimir V. et al. "Search reliability and search efficiency of combined Lévy-Brownian motion: Long relocations mingled with thorough local exploration". Journal of Physics A: Mathematical and Theoretical. 2016. 49(39).

Luukko, P. J. J., J. Helske, ja E. Räsänen. "Introducing libeemd: a program package for performing the ensemble empirical mode decomposition". Computational Statistics. 2016, 31(2). 545-557.

Häkkinen, Antti ja Andre S. Ribeiro. "Characterizing rate limiting steps in transcription from RNA production times in live cells". Bioinformatics. 2016, 32(9). 1346-1352.

Aho, Vesa et al. "Diffusion through thin membranes: Modeling across scales". Physical Review E. 2016. 93(4).

Ropo, Matti et al. "First-principles data set of 45,892 isolated and cation-coordinated conformers of 20 proteinogenic amino acids". Scientific Data. 2016. 3.

Larjo, Antti ja Harri Lähdesmäki. "Using multi-step proposal distribution for improved MCMC convergence in Bayesian network structure learning". Eurasip Journal on Bioinformatics and Systems Biology. 2015. 2015(1).

Bencheikh, K. ja E. Räsänen. "Hermitian one-particle density matrix through a semiclassical gradient expansion". Journal of Physics A: Mathematical and Theoretical. 2015. 49(1).

Mahmoudvand, Rahim, Fatemeh Alehosseini ja Paulo Canas Rodrigues. "Forecasting mortality rate by singular spectrum analysis". REVSTAT STATISTICAL JOURNAL. 2015, 13(3). 193-206.

Safdari, Hadiseh et al. "Quantifying the non-ergodicity of scaled Brownian motion". Journal of Physics A: Mathematical and Theoretical. 2015. 48(37).

Devassy, Lini et al. "Parity-time-symmetric solitons in trapped Bose-Einstein condensates and the influence of varying complex potentials: A variational approach". Physical Review E. 2015. 92(2).

Krüsemann, Henning, Aljaž Godec ja Ralf Metzler. "Ageing first passage time density in continuous time random walks and quenched energy landscapes". Journal of Physics A: Mathematical and Theoretical. 2015. 48(28).

Godec, Aljaž ja Ralf Metzler. "Signal focusing through active transport". Physical Review E. 2015. 92(1).

Rodrigues, Paulo C., Andreia Monteiro ja Vanda M. Lourenço. "A robust AMMI model for the analysis of genotype-by-environment data". Bioinformatics. 2015, 32(1). 58-66.

Mattila, Keijo K., Luiz A. Hegele ja Paulo C. Philippi. "Investigation of an entropic stabilizer for the lattice-Boltzmann method". Physical Review E. 2015. 91(6).

Godec, Aljaž ja Ralf Metzler. "Optimization and universality of Brownian search in a basic model of quenched heterogeneous media". Physical Review E. 2015. 91(5).

Cherstvy, Andrey G. ja Ralf Metzler. "Ergodicity breaking, ageing, and confinement in generalized diffusion processes with position and time dependent diffusivity". Journal of Statistical Mechanics: Theory and Experiment. 2015. 2015(5).

Safdari, Hadiseh et al. "Aging scaled Brownian motion". Physical Review E. 2015. 91(4).

Blavatska, V. ja R. Metzler. "Conformational properties of complex polymers: Rosette versus star-like structures". Journal of Physics A: Mathematical and Theoretical. 2015. 48(13).

Subramaniyam, Narayan Puthanmadam ja Jari Hyttinen. "Dynamics of intracranial electroencephalographic recordings from epilepsy patients using univariate and bivariate recurrence networks". Physical Review E. 2015. 91(2).

Häkkinen, Antti ja Andre S. Ribeiro. "Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data". Bioinformatics. 2015, 31(1). 69-75.

Yang, Zhirong, Jaakko Peltonen ja Samuel Kaski. "Majorization-minimization for manifold embedding". Journal of Machine Learning Research. 2015, 38. 1088-1097.

Tripathi, Shailesh, Matthias Dehmer, ja Frank Emmert-Streib. "NetBioV: An R package for visualizing large network data in biology and medicine". Bioinformatics. 2014, 30(19). 2834-2836.

Rahmatallah, Yasir, Frank Emmert-Streib ja Galina Glazko. "Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets". Bioinformatics. 2014, 30(3). 360-368.

Rodrigues, Paulo C. et al. "Structured orthogonal families of one and two strata prime basis factorial models". Statistical Papers. 2014, 55(3). 603-614.

Peltonen, Jaakko ja Ziyuan Lin. "Information retrieval perspective to meta-visualization". Journal of Machine Learning Research. 2013, 29. 165-180.

Rahmatallah, Y., F. Emmert-Streib ja G. Glazko. "Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses". Bioinformatics. 2012, 28(23). 3073-3080.

Pereira, Dulce G. et al. "A comparison between joint regression analysis and the AMMI model: A case study with barley". JOURNAL OF STATISTICAL COMPUTATION AND SIMULATION. 2012, 82(2). 193-207.

Wu, Grace Hui Min et al. "A stochastic model for survival of early prostate cancer with adjustments for leadtime, length bias, and over-detection". Biometrical Journal. 2012, 54(1). 20-44.

Pearlman, Alexander et al. "Clustering-based method for developing a genomic copy number alteration signature for predicting the metastatic potential of prostate cancer". JOURNAL OF PROBABILITY AND STATISTICS. 2012.

Assanto, Gaetano et al. "Reorientational versus Kerr dark and gray solitary waves using modulation theory". Physical Review E. 2011. 84(6).

Yu, Guoqiang et al. "BACOM: In silico detection of genomic deletion types and correction of normal cell contamination in copy number data". Bioinformatics. 2011, 27(11). 1473-1480.

Potapov, I., E. Volkov ja A. Kuznetsov. "Dynamics of coupled repressilators: The role of mRNA kinetics and transcription cooperativity". Physical Review E. 2011. 83(3).

Peltonen, Jaakko ja Samuel Kaski. "Generative modeling for maximizing precision and recall in information visualization". Journal of Machine Learning Research. 2011, 15. 579-587.

Altay, Gökmen ja Frank Emmert-Streib. "Revealing differences in gene network inference algorithms on the network level by ensemble methods". Bioinformatics. 2010, 26(14). 1738-1744.

Emmert-Streib, Frank. "Exploratory analysis of spatiotemporal patterns of cellular automata by clustering compressibility". Physical Review E. 2010. 81(2).

Glazko, Galina V. ja Frank Emmert-Streib. "Unite and conquer: Univariate and multivariate approaches for finding differentially expressed gene sets". Bioinformatics. 2009, 25(18). 2348-2354.

Emmert-Streib, Frank ja Matthias Dehmer. "Fault tolerance of information processing in gene networks". Physica A: Statistical Mechanics and Its Applications. 2009, 388(4). 541-548.

Knuuti, Mika ja Tim Länsivaara "Performance of Variable Partial Factor approach in a slope design". 13th International Conference on Applications of Statistics and Probability in Civil Engineering(ICASP13), Seoul, South Korea, May 26-30, 2019. 2019.