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Lehtinen T, Virtanen H, Santala S, Santala V. Production of alkanes from CO2 by engineered bacteria. Biotechnology for Biofuels. 2018 elo 21;11. 228.

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Okonkwo O, Lakaniemi A-M, Santala V, Karp M, Mangayil R. Quantitative Real-time PCR Monitoring Dynamics Of Thermotoga Neapolitana In Synthetic Co-Culture For Biohydrogen Production. International Journal of Hydrogen Energy. 2018 helmi 8;43(6):3133-3141.

Tienaho J, Poikulainen E, Sarjala T, Muilu-Mäkelä R, Santala V, Karp M. A Bioscreening Technique for Ultraviolet Irradiation Protective Natural Substances. Photochemistry and Photobiology. 2018;94(6):1273-1280.

Sippola RJ, Hadipour A, Kastinen T, Vivo P, Hukka TI, Aernouts T et al. Carbazole-based small molecule electron donors: Syntheses, characterization, and material properties. Dyes and Pigments. 2017 marras 8;150:79-88. j.dyepig.2017.11.014.

Lehtinen T, Efimova E, Tremblay PL, Santala S, Zhang T, Santala V. Production of long chain alkyl esters from carbon dioxide and electricity by a two-stage bacterial process. Bioresource Technology. 2017 marras 1;243:30-36.

Doan P, Nguyen T, Yli-Harja O, Candeias NR, Kandhavelu M. Effect of alkylaminophenols on growth inhibition and apoptosis of bone cancer cells. European Journal of Pharmaceutical Sciences. 2017 heinä 17;107:208–216.

Kaartinen T, Laine-Ylijoki J, Ahoranta S, Korhonen T, Neitola R. Arsenic Removal from Mine Waters with Sorption Techniques. Mine Water and the Environment. 2017 kesä;36(2):199-208.

Kaksonen AH, Särkijärvi S, Puhakka JA, Peuraniemi E, Junnikkala S, Tuovinen OH. Solid phase changes in chemically and biologically leached copper smelter slag. Minerals Engineering. 2017 touko 15;106:97-101.

L.K. Sulonen M, Lakaniemi A-M, Kokko ME, Puhakka JA. The effect of anode potential on bioelectrochemical and electrochemical tetrathionate degradation. Bioresource Technology. 2017 helmi;226:173-180.

Kaksonen AH, Särkijärvi S, Peuraniemi E, Junnikkala S, Puhakka JA, Tuovinen OH. Metal biorecovery in acid solutions from a copper smelter slag. Hydrometallurgy. 2017;168:135-140.

Kannisto M, Efimova E, Karp M, Santala V. Growth and wax ester production of an Acinetobacter baylyi ADP1 mutant deficient in exopolysaccharide capsule synthesis. Journal of Industrial Microbiology and Biotechnology. 2016 marras 19;1-7.

Işildar A, van de Vossenberg J, Rene ER, van Hullebusch ED, Lens PNL. Two-step bioleaching of copper and gold from discarded printed circuit boards (PCB). Waste Management. 2016 marras;57:149–157.

Di Capua F, Ahoranta SH, Papirio S, Lens PNL, Esposito G. Impacts of sulfur source and temperature on sulfur-driven denitrification by pure and mixed cultures of Thiobacillus. Process Biochemistry. 2016 loka 1;51(10):1576-1584.

Keipi T, Tolvanen KES, Tolvanen H, Konttinen J. Thermo-catalytic decomposition of methane: The effect of reaction parameters on process design and the utilization possibilities of the produced carbon. Energy Conversion and Management. 2016 loka;126:923-934.

Tampio E, Marttinen S, Rintala J. Liquid fertilizer products from anaerobic digestion of food waste: Mass, nutrient and energy balance of four digestate liquid treatment systems. Journal of Cleaner Production. 2016 heinä;125:22–32.

Dessì P, Jain R, Singh S, Seder-Colomina M, van Hullebusch ED, Rene ER et al. Effect of temperature on selenium removal from wastewater by UASB reactors. Water Research. 2016 touko 1;94:146-154.

Mal J, Nancharaiah YV, Van Hullebusch ED, Lens PNL. Metal chalcogenide quantum dots: Biotechnological synthesis and applications. RSC Advances. 2016 huhti;6(47):41477-41495.

Butti SK, Velvizhi G, Sulonen MLK, Haavisto JM, Oguz Koroglu E, Yusuf Cetinkaya A et al. Microbial electrochemical technologies with the perspective of harnessing bioenergy: Maneuvering towards upscaling. Renewable and Sustainable Energy Reviews. 2016 tammi;53:462-476.

Tolvanen H, Keipi T, Raiko R. A study on raw, torrefied, and steam-exploded wood: Fine grinding, drop-tube reactor combustion tests in N2/O2 and CO2/O2 atmospheres, particle geometry analysis, and numerical kinetics modeling. Fuel. 2016;176:153-164.

Kaksonen AH, Särkijärvi S, Puhakka JA, Peuraniemi E, Junnikkala S, Tuovinen OH. Chemical and bacterial leaching of metals from a smelter slag in acid solutions. Hydrometallurgy. 2016;159:46-53.

Jaatinen S, Lakaniemi A-M, Rintala J. Use of diluted urine for cultivation of Chlorella vulgaris. Environmental Technology. 2016;37(9):1159-1170.

George Abraham B. Fluorescent Protein Toolbox: Protein Engineering Broadens the Range of in vitro and in vivo Applications of Fluorescent Proteins. Tampere University of Technology, 2015. 92 s. (Tampere University of Technology. Publication).

Marjakangas JM, Chen CY, Lakaniemi AM, Puhakka JA, Whang LM, Chang JS. Simultaneous nutrient removal and lipid production with Chlorella vulgaris on sterilized and non-sterilized anaerobically pretreated piggery wastewater. Biochemical Engineering Journal. 2015 marras 5;103:177-184.

Marjakangas JM, Chen C-Y, Lakaniemi A-M, Puhakka JA, Whang L-M, Chang J-S. Selecting an indigenous microalgal strain for lipid production in anaerobically treated piggery wastewater. Bioresource Technology. 2015 syys;191:369-376.

Zou G, Papirio S, Lai X, Wu Z, Zou L, Puhakka J et al. Column leaching of low-grade sulfide ore from Zijinshan copper mine. International Journal of Mineral Processing. 2015 heinä 15;139:11-16. 2730.

Marjakangas JM, Lakaniemi AM, Koskinen PEP, Chang JS, Puhakka JA. Lipid production by eukaryotic microorganisms isolated from palm oil mill effluent. Biochemical Engineering Journal. 2015 heinä 5;99:48-54.

Nybond S, Karp M, Yrjönen T, Tammela P. Bioluminescent whole-cell reporter gene assays as screening tools in the identification of antimicrobial natural product extracts. Journal of Microbiological Methods. 2015 heinä 1;114:54-56.

Nancharaiah YV, Lens PNL. Selenium biomineralization for biotechnological applications. Trends in Biotechnology. 2015 kesä;33(6):323-330.

Santala S. Developing Synthetic Biology Tools and Model Chassis: Production of Bioenergy and High-Value Molecules. Tampere University of Technology, 2015. 99 s. (Tampere University of Technology. Publication).

Mangayil R. Biohydrogen Production: A Protein to Community Level Perspective Study. Tampere University of Technology, 2015. 89 s. (Tampere University of Technology. Publication).

Mangayil R, Aho T, Karp M, Santala V. Improved bioconversion of crude glycerol to hydrogen by statistical optimization of media components. Renewable Energy. 2015 maalis 1;75:583-589.

Nybond S, Ghemtio L, Nawrot DA, Karp M, Xhaard H, Tammela P. Integrated in vitro-in silico screening strategy for the discovery of antibacterial compounds. Assay and Drug Development Technologies. 2015 helmi 1;13(1):25-33.

Rosholm T, Gois PMP, Franzen R, R. Candeias N. Glycerol as an Efficient Medium for the Petasis Borono-Mannich Reaction. Chemistryopen. 2015 helmi;4(1):39-46.

Heiskanen JP, Manninen VM, Pankov D, Omar WAE, Kastinen T, Hukka TI et al. Aryl end-capped quaterthiophenes applied as anode interfacial layers in inverted organic solar cells. Thin Solid Films. 2015 tammi 1;574:196-206.

Di Capua F, Papirio S, Lens PNL, Esposito G. Chemolithotrophic denitrification in biofilm reactors. Chemical Engineering Journal. 2015;280:643-657.

Taskan E, Özkaya B, Hasar H. Combination of a novel electrode material and artificial mediators to enhance power generation in an MFC. Water Science and Technology. 2015;71(3):320-328.

Nancharaiah YV, Venkata Mohan S, Lens PNL. Metals removal and recovery in bioelectrochemical systems: A review. Bioresource Technology. 2015;195:102-114.

Tienaho J, Sarjala T, Franzén R, Karp M. Method with high-throughput screening potential for antioxidative substances using Escherichia coli biosensor katG'::lux. Journal of Microbiological Methods. 2015;118:78-80. 4723.

Warwick MEA, Barreca D, Bontempi E, Carraro G, Gasparotto A, Maccato C et al. Pt-functionalized Fe2O3 photoanodes for solar water splitting: the role of hematite nano-organization and the platinum redox state. Physical Chemistry Chemical Physics. 2015;17(19):12899-12907.

Warwick MEA, Kaunisto K, Barreca D, Carraro G, Gasparotto A, Maccato C et al. Vapor phase processing of α-Fe2O3 photoelectrodes for water splitting: An insight into the structure/property interplay. ACS Applied Materials and Interfaces. 2015;7(16):8667-8676.

Santala S, Karp M, Santala V. Rationally engineered synthetic coculture for improved biomass and product formation. PLoS ONE. 2014 joulu 3;9(12). e113786.

Ciranna A. Biohydrogen production in extreme conditions: A comprehensive study of the fermentative metabolism of a polyextremophilic bacterium. Tampere: Tampere University of Technology, 2014. 220 s. (Tampere University of Technology. Publication).

Raghuwanshi S, Deswal D, Karp M, Kuhad RC. Bioprocessing of enhanced cellulase production from a mutant of Trichoderma asperellum RCK2011 and its application in hydrolysis of cellulose. Fuel. 2014 touko 15;124:183-189.

Ciranna A, Ferrari R, Santala V, Karp M. Inhibitory effects of substrate and soluble end products on biohydrogen production of the alkalithermophile Caloramator celer: Kinetic, metabolic and transcription analyses. International Journal of Hydrogen Energy. 2014 huhti 15;39(12):6391-6401.

Ciranna A, Pawar SS, Santala V, Karp M, van Niel EWJ. Assessment of metabolic flux distribution in the thermophilic hydrogen producer Caloramator celer as affected by external pH and hydrogen partial pressure. Microbial Cell Factories. 2014 maalis 28;13(1). 48.

Santala S, Efimova E, Koskinen P, Karp MT, Santala V. Rewiring the wax ester production pathway of acinetobacter baylyi ADP1. ACS Synthetic Biology. 2014 maalis 21;3(3):145-151.

Seppälä J. Application of Computational Methods for Fermentative Hydrogen Production. Tampere University of Technology, 2014. 116 s. (Tampere University of Techonology. Publication).

Höhn J, Lehtonen E, Rasi S, Rintala J. A geographical information system (GIS) based methodology for determination of potential biomasses and sites for biogas plants in southern Finland. Applied Energy. 2014;113:1-10.

Bevilaqua D, Lahti-Tommila H, Garcia Jr. O, Puhakka JA, Tuovinen OH. Bacterial and chemical leaching of chalcopyrite concentrates as affected by the redox potential and ferric/ferrous iron ratio at 22 C. International Journal of Mineral Processing. 2014;132:1-7.

Virolainen N, Karp M. Biosensors, Antibiotics and Food. julkaisussa Thouand G, Marks R, toimittajat, Bioluminescence: Fundamentals and Applications in Biotechnology - Volume 2. Springer. 2014. s. 153-185. (Advances in biochemical engineering : biotechnology).

Nissilä ME, Lay C-H, Puhakka JA. Dark fermentative hydrogen production from lignocellulosic hydrolyzates - A review. Biomass & Bioenergy. 2014;67:145-159.

Papirio S, Zou G, Ylinen A, Di Capua F, Pirozzi F, Puhakka JA. Effect of arsenic on nitrification of simulated mining water. Bioresource Technology. 2014;164:149-154.

Zou G, Papirio S, Ylinen A, Di Capua F, Lakaniemi AM, Puhakka JA. Fluidized-bed denitrification for mine waters. Part II: effects of Ni and Co. BIODEGRADATION. 2014;25:417-423.

Abraham BG, Santala V, Tkachenko NV, Karp M. Fluorescent protein-based FRET sensor for intracellular monitoring of redox status in bacteria at single cell level. Analytical and Bioanalytical Chemistry. 2014;406(28):7195-7204.

Männistö NM, Ahola N, Karp MT, Veiranto M, Kellomäki M. In vitro bioluminescence used as a method for real-time inhibition zone testing for antibiotic-releasing composites. British Microbiology Research Journal. 2014;4(2):235-254.

Jokela P, Lepistö R. Lamella dissolved air flotation treatment of fish farming effluents as a part of an integrated farming and effluent treatment concept. Environmental Technology. 2014;35(21):2727-2733.

Kinnunen HV, Koskinen PEP, Rintala J. Mesophilic and thermophilic anaerobic laboratory-scale digestion of Nannochloropsis microalga residues. Bioresource Technology. 2014;155:314-322.

Kannisto M, Aho T, Karp M, Santala V. Metabolic engineering of Acinetobacter baylyi ADP1 for improved growth on gluconate and glucose. Applied and Environmental Microbiology. 2014;80(22):7021-7027.

Guglielmetti S, Zanoni I, Balzaretti S, Miriani M, Taverniti V, de Noni I et al. Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain. Applied and Environmental Microbiology. 2014;80(17):5170-5177.

Köroglu EO, Yilmaz Baysoy D, Cetinkaya AY, Özkaya B, Cakmakci M. Novel design of a multitube microbial fuel cell (UM2FC) for energy recovery and treatment of membrane concentrates. Biomass & Bioenergy. 2014;69:58-65.

Stuani L, Lechaplais C, Salminen AV, Segurens B, Durot M, Castelli V et al. Novel metabolic features in Acinetobacter baylyi ADP1 revealed by a multiomics approach. Metabolomics. 2014.

Guglielmetti S, Balzaretti S, Taverniti V, Miriani M, Milani C, Scarafoni A et al. TgaA, a VirB1-like component belonging to a putative type IV secretion system of Bifidobacterium bifidum MIMBb75. Applied and Environmental Microbiology. 2014;80(17):5161-5169.

Rasi S, Läntelä J, Rintala J. Upgrading landfill gas using a high pressure water absorption process. Fuel. 2014;115:539-543.

Kivistö A, Santala V, Karp M. Non-sterile process for biohydrogen and 1,3-propanediol production from raw glycerol. International Journal of Hydrogen Energy. 2013 syys 10;38(27):11749-11755.

Seppälä JJ, Larjo A, Aho T, Yli-Harja O, Karp MT, Santala V. Prospecting hydrogen production of Escherichia coli by metabolic network modeling. International Journal of Hydrogen Energy. 2013 syys 10;38(27):11780-11789.

Hassan SS, Farhan M, Mangayil R, Huttunen H, Aho T. Bioprocess data mining using regularized regression and random forests. BMC Systems Biology. 2013 elo 12;7(Suppl 1). 5.

Bayr S, Kaparaju P, Rintala J. Screening pretreatment methods to enhance thermophilic anaerobic digestion of pulp and paper mill wastewater treatment secondary sludge. Chemical Engineering Journal. 2013 touko 1;223:479-486.

Tähti H, Kaparaju P, Rintala J. Hydrogen and methane production in extreme thermophilic conditions in two-stage (upflow anaerobic sludge bed) UASB reactor system. International Journal of Hydrogen Energy. 2013 huhti 22;38(12):4997-5002.

Rasi S, Seppälä M, Rintala J. Organic silicon compounds in biogases produced from grass silage, grass and maize in laboratory batch assays. Energy. 2013 huhti 1;52:137-142.

Kaparaju P, Rasi S, Rintala J. Biogas upgrading and compression. julkaisussa Korres NE, O´Kiely P, Benzie JAH, West JS, toimittajat, Bioenergy Production by Anaerobic Digestion: Using Agricultural Biomass and Organic Wastes. London: Routledge. 2013. s. 152-182

Lakaniemi A-M, Tuovinen OH, Puhakka JA. Anaerobic conversion of microalgal biomass to sustainable energy carriers - A review. Bioresource Technology. 2013;135(May):222-231.

Ahola N, Männistö N, Veiranto M, Karp M, Rich J, Efimov A et al. An in vitro study of composites of poly(L-lactide-co-e-caprolactone), ß-tricalcium phosphate and ciprofloxacin intended for local treatment of osteomyelitis. Biomatter. 2013;3(2):1-13. e23162.

Nybond S, Karp M, Tammela P. Antimicrobial assay optimization and validation for HTS in 384-well format using a bioluminescent E. coli K-12 strain. European Journal of Pharmaceutical Sciences. 2013;49(4):782-789.

Mäkinen AE, Lay C-H, Nissilä ME, Puhakka JA. Bioelectricity production on xylose with a compost enrichment culture. International Journal of Hydrogen Energy. 2013;38(35):15606-15612.

Seppälä M, Pyykkönen V, Väisänen A, Rintala J. Biomethane production from maize and liquid cow manure - Effect of share of maize, post-methanation potential and digestate characteristics. Fuel. 2013;107:209-216.

Kaartinen T, Sormunen K, Rintala J. Case study on sampling, processing and characterization of landfilled municipal solid waste in the view of landfill mining. Journal of Cleaner Production. 2013;55:56-66.

Privalova E, Rasi S, Mäki-Arvela P, Eränen K, Rintala J, Murzin DY et al. CO2 capture from biogas: absorbent selection. RSC Advances. 2013;3(9):2979-2994.

Lay C-H, Sen B, Chen C-C, Wu J-H, Lee S-C, Lin C-Y. Co-fermentation of water hyacinth and beverage wastewater in powder and pellet form for hydrogen production. Bioresource Technology. 2013;135:610-615.

Zou G, Zengling W, Xiaokang L, Laichang Z, Renman R, Papirio S et al. Column bioleaching of low grade copper sulfide ore at extreme conditions for most mineral processing bacteria. Advanced Materials Research. 2013;825:318-321.

Sormunen K, Laurila T, Rintala J. Determination of waste decay rate for a large Finnish landfill by calibrating methane generation models on the basis of methane recovery and emissions. Waste Management and Research. 2013;31(10):979-985.

Futagami T, Morono Y, Terada T, Kaksonen AH, Inagaki F. Distribution of dehalogenation activity in subseafloor sediments of the Nankai Trough subduction zone. Philosophical Transactions of the Royal Society B: Biological Sciences. 2013;368(1616):1-15. 20120249.

Ciranna A, Larjo A, Kivistö A, Santala V, Roos C, Karp M. Draft genome sequence of the hydrogen- and ethanol-producing anaerobic alkalithermophilic bacterium Caloramator celer. Genome Announcements. 2013;1(4):1-2.

Bevilaqua D, Lahti H, Suegama P, Garcia Jr. O, Benedetti A, Puhakka J et al. Effect of NA-chloride on the bioleaching of a chalcopyrite concentrate in shake flasks and stirred tank bioreactors. Hydrometallurgy. 2013;138:1-13.

Özkaya B, Cetinkaya AY, Cakmakci M, Karadag D, Sahinkaya E. Electricity generation from young landfill leachate in a microbial fuel cell with a new electrode material. Bioprocess and Biosystems Engineering. 2013;36(4):399-405.

Nissilä ME, Sulonen MLK, Puhakka JA. Enrichment of electrogens on xylose from anaerobi digester sample. julkaisussa Proceedings of 13th World Congress on Anaerobic Digestion, 25th-28th June 2013, Santiago de Compostela, Spain. IWA International Water Association. 2013. (Anaerobic Digestion World Congress).

Papirio S, Ylinen A, Zou G, Peltola M, Esposito G, Puhakka JA. Fluidized-bed denitrification for mine waters. Part I: low pH and temperature operation. BIODEGRADATION. 2013;1-11.

Kaparaju P, Rintala J. Generation of heat and power from biogas for stationary applications: boilers, gas engines and turbines, combined heat and power (CHP) plants and fuel cells. julkaisussa Wellinger A, Murphy J, Baxter D, toimittajat, The biogas handbook: Science, production and applications. Woodhead Publishing. 2013. s. 404-427

Kivistö A, Larjo A, Ciranna A, Santala V, Roos C, Karp M. Genome Sequence of Halanaerobium saccharolyticum subsp. saccharolyticum Strain DSM 6643T, a Halophilic Hydrogen-Producing Bacterium. Genome Announcements. 2013;1(2):1-2.

Isohanni P, Huehn S, Aho T, Alter T, Lyhs U. Heat stress adaptation induces cross-protection against lethal acid stress conditions in Arcobacter butzleri but not in Campylobacter jejuni. Food Microbiology. 2013;34(2):431-435.

Zou G, Ylinen A, Di Capua F, Papirio S, Lakaniemi A-M, Puhakka J. Impact of heavy metals on denitrification of simulated mining wastewaters. Advanced Materials Research. 2013;825:500-503.

Efimova E, Marjakangas JM, Lakaniemi A-M, Koskinen PEP, Puhakka JA. Lipid profile characterization of wastewaters from different origins. Water Science and Technology. 2013;68(11):2505-2514.

Seppälä J, Larjo A, Aho T, Kivistö A, Karp M, Santala VI. Modification of the Escherichia coli metabolic model LAF1260 based on anaerobic experiments. julkaisussa Autio R, Shmulevich I, Strimmer K, Wiuf C, Sarbu S, Yli-Harja O, toimittajat, The 10th International Workshop on Computational Systems Biology, WCSB 2013, June 10-12, Tampere, Finland. 2013. s. 80-86. (International Workshop on Computational Systems Biology).

Karadag D, Özkaya B, Ölmez E, Nissilä ME, CakmakCi M, Yildiz S et al. Profiling of bacterial community in a full-scale aerobic composting plant. International Biodeterioration and Biodegradation. 2013;77:85-90.

Seppälä M, Laine A, Rintala J. Screening of novel plants for biogas production in northern conditions. Bioresource Technology. 2013;139:355-362.

Taverniti V, Stuknyte M, Minuzzo M, Arioli S, De Noni I, Scabiosi C et al. S-Layer protein mediates the stimulatory effect of lactobacillus helveticus MIMLh5 on innate immunity. Applied and Environmental Microbiology. 2013;79(4):1221-1231.

Rismani-Yazdi H, Carver SM, Christy AD, Yu Z, Bibby K, Peccia J et al. Suppression of methanogenesis in cellulose-fed microbial fuel cells in relation to performance, metabolite formation, and microbial population. Bioresource Technology. 2013;129:281-288.

Seppälä M, Pyykkönen V, Laine A, Rintala J. Methane production from maize in Finland - Screening for different maize varieties and plant parts. Biomass & Bioenergy. 2012 marras;46(November):282-290.

Bayr S, Rintala J. Thermophilic anaerobic digestion of pulp and paper mill primary sludge and co-digestion of primary and secondary sludge. Water Research. 2012 loka 1;46(15):4713-4720.

Sivula L, Sormunen K, Rintala J. Leachate formation and characteristics from gasification and grate incineration bottom ash under landfill conditions. Waste Management. 2012 huhti;32(4):780-788.

Kivistö A, Santala V, Karp M. 1,3-Propanediol production and tolerance of a halophilic fermentative bacterium, Halanaerobium saccharolyticum subsp saccharolyticum. Journal of Biotechnology. 2012;158(4):242-247.

Mangayil R, Karp M, Santala V. Bioconversion of crude glycerol from biodiesel production to hydrogen. International Journal of Hydrogen Energy. 2012;37(17):12198-12204.

Özkaya B, Akoglu B, Karadag D, Aci G, Taskan E, Hasar H. Bioelectricity production using a new electrode in a microbial fuel cell. Bioprocess and Biosystems Engineering. 2012;35(7):1219-1227.

Virolainen N, Guglielmetti S, Arioli S, Karp M. Bioluminescence-based identification of nisin producers - A rapid and simple screening method for nisinogenic bacteria in food samples. International Journal of Food Microbiology. 2012;158(12):126-132.

Puhakka JA, Karadag D, Nissilä ME. Comparison of mesophilic and thermophilic anaerobic hydrogen production by hot spring enrichment culture. International Journal of Hydrogen Energy. 2012;37(21):16453-16459.

Nissilä ME, Li Y-C, Wu S-Y, Puhakka JA. Dark fermentative hydrogen production from neutralized acid hydrolysates of conifer pulp. Applied Biochemistry and Biotechnology. 2012;168(8):2160-2169.

Mäkinen AE, Nissilä ME, Puhakka JA. Dark fermentative hydrogen production from xylose by a hot spring enrichment culture. International Journal of Hydrogen Energy. 2012;37(17):12234-12240.

Chu C-Y, Sen B, Lay C-H, Lin Y-C, Lin C-Y. Direct fermentation of sweet potato to produce maximal hydrogen and ethanol. Applied Energy. 2012;100:10-18.

Bayr S, Pakarinen O, Korppoo A, Liuksia S, Väisänen A, Kaparaju P et al. Effect of additives on process stability of mesophilic anaerobic monodigestion of pig slaughterhouse waste. Bioresource Technology. 2012;120(September):106-113.

Chen C-C, Sen B, Chuang Y-S, Tsai C-J, Lay C-H. Effect of effluent recycle ratio in a continuous anaerobic biohydrogen production system. Journal of Cleaner Production. 2012;32:236-243.

Hulatt CJ, Lakaniemi A-M, Puhakka JA, Thomas DN. Energy Demands of Nitrogen Supply in Mass Cultivation of Two Commercially Important Microalgal Species, Chlorella vulgaris and Dunaliella tertiolecta. BioEnergy Research. 2012;5(3):669-684.

Ciranna A, Santala V, Karp M. Enhancing biohydrogen production of the alkalithermophile Thermobrachium celere. International Journal of Hydrogen Energy. 2012;37(7):5550-5558.

Lakaniemi A-M, Hulatt CJ, Wakeman KD, Thomas DN, Puhakka JA. Eukaryotic and prokaryotic microbial communities during microalgal biomass production. Bioresource Technology. 2012;124(November):387-393.

Papirio S. Fluidized-bed bioreactor applications for the treatment of metal-, sulfate- and nitrate-contaminated mine waters. Università degli Studi di Cassino e del Lazio Meridionale, 2012. (Università degli Studi di Cassino e del Lazio Meridionale).

Lakaniemi A-M, Intihar VM, Tuovinen OH, Puhakka JA. Growth of Chlorella vulgaris and associated bacteria in photobioreactors. Microbial Biotechnology. 2012;5(1):69-78.

Lakaniemi A-M, Intihar VM, Tuovinen OH, Puhakka JA. Growth of Dunaliella tertiolecta and associated bacteria in photobioreactors. Journal of Industrial Microbiology and Biotechnology. 2012;39(9):1357-1365.

Carver SM, Nelson MC, Lepistö R, Yu Z, Tuovinen OH. Hydrogen and volatile fatty acid production during fermentation of cellulosic sustrates by a thermophilic consortium at 50 and 60 °C. Bioresource Technology. 2012;104(January):424-431.

Nissilä ME, Li Y-C, Wu S-Y, Lin C-Y, Puhakka JA. Hydrogenic and methanogenic fermentation of birch and conifer pulps. Applied Energy. 2012;100(December):58-65.

Taverniti V, Minuzzo M, Arioli S, Junttila I, Hämäläinen S, Turpeinen H et al. In Vitro functional and immunomodulatory properties of the Lactobacillus helveticus MIMLh5-Streptococcus salivarius ST3 association that are relevant to the development of a Pharyngeal probiotic product. Applied and Environmental Microbiology. 2012;78(12):4209-4216.

Läntelä J, Rasi S, Lehtinen J, Rintala J. Landfill gas upgrading with pilot-scale water scrubber: Performance assessment with adsorption water recycling. Applied Energy. 2012;92(April):307-314.

Sharma KK, Sharma S, Karp M, Kuhad RC. Ligninolytic enzymes improve soil DNA purity: Solution to methodological challenges of soil metagenomics. Journal of Molecular Catalysis B: Enzymatic. 2012;83(November):73-79.

Bayr S, Rantanen M, Kaparaju P, Rintala J. Mesophilic and thermophilic anaerobic co-digestion of rendering plant and slaughterhouse wastes. Bioresource Technology. 2012;104(January):28-36.

Halinen A-K, Beecroft NJ, Määttä K, Nurmi P, Laukkanen K, Kaksonen AH et al. Microbial community dynamics during a demonstration-scale bioheap leaching operation. Hydrometallurgy. 2012;125-126:34-41.

Santala S, Karp M, Santala V. Monitoring alkane degradation by single biobrick integration to an optimal cellular framework. ACS Synthetic Biology. 2012;1(2):60-64.

Ahola N, Veiranto M, Männistö N, Karp M, Rich J, Efimov A et al. Processing and sustained in vitro release of rifampicin containing composites to enhance the treatment of osteomyelitis. Biomatter. 2012;2(4):1-13.

Lakaniemi A-M, Tuovinen OH, Puhakka JA. Production of Electricity and Butanol from Microalgal Biomass in Microbial Fuel Cells. BioEnergy Research. 2012;5(2):481-491.

Kumar G, Lay C-H, Chu C-Y, Wu J-H, Lee S-C, Lin C-Y. Seed inocula for biohydrogen production from biodiesel solid residues. International Journal of Hydrogen Energy. 2012;37(29):15489-15495.

Li Y-C, Nissilä ME, Wu S-Y, Lin C-Y, Puhakka JA. Silage as source of bacteria and electrons for dark fermentative hydrogen production. International Journal of Hydrogen Energy. 2012;37(20):15518-15524.

Kandhavelu M, Paturu L, Mizar A, Mahmudov KT, Kopylovich MN, Karp M et al. Synthesis, characterization and antimicrobial activity of arylhydrazones of methylene active compounds. Pharmaceutical Chemistry Journal. 2012;46(3):157-164.

Sivula L, Oikari A, Rintala J. Toxicity of waste gasification bottom ash leachate. Waste Management. 2012;32(6):1171-1178.

Bomberg M, Munster U, Pumpanen J, Ilvesniemi H, Heinonsalo J. Archaeal communities in boreal forest tree rhizospheres respond to changing soil temperatures. Microbial Ecology. 2011;62(1):205-217.

Carver SM, Vuoriranta P, Tuovinen OH. A thermophilic microbial fuel cell design. Journal of Power Sources. 2011;196(8):3757-3760.

Bevilaqua D, Garcia Jr O, Suegama PH, Benedetti AV, Lahti H, Puhakka J et al. Avaliacao eletroquimica de residuos de biolixiviacao da calcopirita (CuFeS2) por acidithiobacillus ferrooxidans. julkaisussa XXIV ENTMME 2011, Encontro Nacional de Tratamento de Minerios e Metalurgia Extrativa, 16 a 19 de outubro de 2011, Salvador/Bahia. Encontro Nacional de Tratamento de Minerios e Metalurgia Extrativa. 2011. s. 1179-1186. (Encontro Nacional de Tratamento de Minerios e Metalurgia Extrativa).

George Abraham B, Tkachenko NV, Santala V, Lemmetyinen H, Karp M. Bidirectional fluorescence resonance energy transfer (FRET) in mutated and chemically modified yellow fluorescent protein (YFP). Bioconjugate Chemistry. 2011;22(2):227-234.

Lakaniemi A-M, Hulatt CJ, Thomas DN, Tuovinen OH, Puhakka JA. Biogenic hydrogen and methane production from Chlorella vulgaris and Dunaliella tertiolecta biomass. Biotechnology for Biofuels. 2011;4(1):1-12. 34.

Lakaniemi A-M, Koskinen PEP, Nevatalo LM, Kaksonen AH, Puhakka JA. Biogenic hydrogen and methane production from reed canary grass. Biomass & Bioenergy. 2011;35(2):773-780.

Kaksonen AH, Lavonen L, Kuusenaho M, Kolli A, Närhi H, Vestola E et al. Bioleaching and recovery of metals from final slag waste of the copper smelting industry. Minerals Engineering. 2011;24(11):1113-1121.

Wakeman KD, Honkavirta P, Puhakka JA. Bioleaching of flotation by-products of talc production permits the separation of nickel and cobalt from iron and arsenic. Process Biochemistry. 2011;46:1589-1598.

Smolander O-P, Kandhavelu M, Mannerström H, Lihavainen E, Kalaichelvan S, Healy S et al. Cell-to-cell diversity in protein levels of a gene driven by a tetracycline inducible promoter. BMC Molecular Biology. 2011;12:1-27. 21.

Kivistö A, Santala V, Karp M. Closing the 1,3-propanediol route enhances hydrogen production from glyserol by Halanaerobium saccharolyticum subsp. saccharolyticum. International Journal of Hydrogen Energy. 2011;36(12):7074-7080.

Santala S, Larjo A, Aho T, Karp M, Santala V. Construction and Modelling of an Artificial Microecosystem. julkaisussa Koeppl H, Acimovic J, Kesseli J, Mäki-Marttunen T, Larjo A, Yli-Harja O, toimittajat, Eight International Workshop on Computational Systems Biology, WCSB 2011, June 6-8, Zurich, Switzerland. TICSP series. Zurich: WCSB 2011. 2011. s. 225-225. (International Workshop on Computational Systems Biology WCSB; 57).

Smolander O-P, Kandhavelu M, Mannerström H, Lihavainen E, Kalaichelvan S, Healy S et al. Dynamics of Gene Expression under Tetracycline Inducible Promoters. julkaisussa Koeppl H, Acimovic J, Kesseli J, Mäki-Marttunen T, Larjo A, Yli-Harja O, toimittajat, Eight International Workshop on Computational Systems Biology, WCSB 2011, June 6-8, Zurich, Switzerland. TICSP series. Zurich: WCSB 2011. 2011. s. 227-227. (International Workshop on Computational Systems Biology WCSB; 57).

Nissilä ME, Tähti HP, Rintala JA, Puhakka JA. Effects of heat treatment on hydrogen production potential and microbial community of thermophilic compost enrichment cultures. Bioresource Technology. 2011;102(6):4501-4506.

Seppälä JJ, Puhakka JA, Yli-Harja O, Karp MT, Santala V. Fermentative hydrogen production by Clostridium butyricum and Escherichia coli in pure and cocultures. International Journal of Hydrogen Energy. 2011;36(17):10701-10708.

Mangayil R, Santala V, Karp M. Fermentative hydrogen production from different sugars by Citrobacter sp. CMC-1 in batch culture. International Journal of Hydrogen Energy. 2011;36:15187-15194.

Kivistö A, Karp MT. Halophilic anaerobic fermentative bacteria: Review. Journal of Biotechnology. 2011;152(4):114-124.

Puhakka J. IEA-HIA Task Semiannual Report 2010 from Finland. IEA, 2011. 4 s.

Santala S, Efimova E, Kivinen V, Larjo A, Aho T, Karp M et al. Improved triacylglycerol production in Acinetobacter baylyi ADP1 by metabolic engineering. Microbial Cell Factories. 2011;10(36):1-10.

Lindsasy MBJ, Wakeman KD, Rowe OF, Grail BM, Ptacek CJ, Blowes DW et al. Microbiology and geochemistry of mine tailings amended with organic carbon for passive treatment of pore water. Geomicrobiology Journal. 2011;28(3):229-241.

Tolvanen KES, Karp MT. Molecular methods for characterizing mixed microbial communities in hydrogen-fermenting systems. International Journal of Hydrogen Energy. 2011;36(9):5280-5288.

Santala S, Efimova E, Karp M, Santala V. Real-Time monitoring of intracellular wax ester metabolism. Microbial Cell Factories. 2011;10(1):1-8. 75.

Tolvanen KES, Mangayil RK, Karp MT, Santala VP. Simple enrichment system for hydrogen producers. Applied and Environmental Microbiology. 2011;77(12):4246-4248.

Carver SM, Hulatt CJ, Thomas DN, Tuovinen OH. Thermophilic, anaerobic co-digestion of microalgal biomass and cellulose for H2 production. BIODEGRADATION. 2011;22(4):805-814.

Nissilä ME, Tähti HP, Rintala JA, Puhakka JA. Thermophilic hydrogen production from cellulose with rumen fluid enrichment cultures: Effects of different heat treatments. International Journal of Hydrogen Energy. 2011;36(2):1482-1490.

Bhatti TM, Bigham JM, Vuorinen A, Tuovinen OH. Weathering of biotite in Acidithiobacillus ferrooxidans cultures. Geomicrobiology Journal. 2011;28(2):130-134.

Bhatti TM, Bigham JM, Vuorinen A, Tuovinen OH. Weathering of phlogopite in simulated bioleaching solutions. International Journal of Mineral Processing. 2011;98(1-2):30-34.

Nevatalo L. Bioreactor applications utilizing mesophilic sulfate-reducing bacteria for treatment of mine wastewaters at 9-35 oC. Tampere: Tampere University of Technology, 2010. 92 s. (Tampere University of Technology. Publication).

Vestola EA, Kuusenaho MK, Närhi HM, Tuovinen OH, Puhakka JA, Plumb JJ et al. Acid bioleaching of solid waste materials from copper, steel and recycling industries. Hydrometallurgy. 2010;103(1-4):74-79.

Guglielmetti S, Taverniti V, Minuzzo M, Arioli S, Zanoni I, Stuknyte M et al. A dairy bacterium displays in vitro probiotic propesties for the pharyngeal mucosa by antagonizing group a streptococci and modulating the immune response. Infection and Immunity. 2010;78(11):4734-4743.

Arioli S, Ragg E, Scaglioni L, Fessas D, Signorelli M, Karp M et al. Alkalizing reactions streamline cellular metabolism in acidogenic microorganisms. PLoS ONE. 2010;5(11, e15520):1-8.

Bhatti TM, Bigham JM, Riekkola-Vanhanen M, Tuovinen OH. Altered mineralogy associated with stirred tank bioreactor leaching of a black schist ore. Hydrometallurgy. 2010;100(3-4):181-184.

Välimaa A-L, Kivistö AT, Leskinen PI, Karp MT. A novel biosensor for the detection of zearalenone family mycotoxins in milk. Journal of Microbiological Methods. 2010;80(1):44-48.

Pikkemaat MG, Rapallini MLBA, Karp MT, Elferink JWA. Application of a luminescent bacterial biosensor for the detection of tetracyclines in routine analysis of poultry muscle samples. Food Additives and Contaminants Part A: Chemistry Analysis Control Exposure and Risk Assessment. 2010;27(8):1112-1117.

Tao J, Mancl KM, Tuovinen OH. Attenuation of pollutants in sanitary sewer overflow: Comparative evaluation of treatment with fixed media bioreactors. Bioresource Technology. 2010;101(6):1781-1786.

Kolehmainen RE, Crochet LM, Kortelainen NM, Langwaldt JH, Puhakka JA. Biodegradation of aqueous organic matter over seasonal changes: bioreactor experiments with indigenous lake water bacteria. Journal of Environmental Engineering: ASCE. 2010;136(6):607-615.

Kivistö A, Santala V, Karp M. Biohydrogen and 1,3-Propanediol production using halophilic fermentative bacteria. julkaisussa ESF-Bielefeld-CeBiTec Conference, Microbes and Industrial Biotechnology, Bielefeld, Germany, 21-24 November 2010, Booklet of Abstracts. 2010. s. 21-21

Nevatalo LM, Mäkinen AE, Kaksonen AH, Puhakka JA. Biological hydrogen slufide production in an ethanol-lactate fed fluidized-bed bioreactor. Bioresource Technology. 2010;101(1):276-284.

Nurmi P, Özkaya B, Sasaki K, Kaksonen AH, Riekkola-Vanhanen M, Tuovinen OH et al. Biooxidation and precipitation for iron and sulfate removal from heap bioleaching effluent streams. Hydrometallurgy. 2010;101(1-2):7-14.

Bigham JM, Jones FS, Özkaya B, Sahinkaya E, Puhakka JA, Tuovinen OH. Characterization of jarosites produced by chemical synthesis over a temperature gradient from 2 to 40 °C. International Journal of Mineral Processing. 2010;94(3-4):121-128.

Sasaki K, Takatsugi K, Kaneko K, Kozai N, Ohnuki T, Tuovinen OH et al. Characterization of secondary arsenic-bearing precipitates formed in the bioleaching of enargite by Acidithiobacillus ferrooxidans. Hydrometallurgy. 2010;104(3-4):424-431.

Karadag D, Puhakka JA. Direction of glucose fermentation towards hydrogen or ethanol production through on-line pH control. International Journal of Hydrogen Energy. 2010;35(19):10245-10251.

Karadag D, Puhakka JA. Effect of changing temperature on anaerobic hydrogen production and microbial community composition in an open-mixed culture bioreactor. International Journal of Hydrogen Energy. 2010;35(20):10954-10959.

Karadag D, Puhakka JA. Enhancement of anaerobic hydrogen production by iron and nickel. International Journal of Hydrogen Energy. 2010;35(16):8554-8560.

Tolvanen KES, Santala VP, Karp MT. [FeFe]-hydrogenase gene quantification and melting curve analysis from hydrogen-fermenting bioreactor samples. International Journal of Hydrogen Energy. 2010;35(8):3433-3439.

Gramp JP, Bigham JM, Jones FS, Tuovinen OH. Formation of Fe-sulfides in cultures of sulfate-reducing bacteria. Journal of Hazardous Materials. 2010;175(1-3):1062-1067.

Nevatalo LM, Bijmans MFM, Lens PNL, Kaksonen AH, Puhakka JA. Hydrogenotrophic sulfate reduction in a gas-lift bioreactor operated at 9°C. Journal of Microbiology and Biotechnology. 2010;20(3):615-621.

Kivistö A, Santala V, Karp M. Hydrogen production from glycerol using halophilic fermentative bacteria. Bioresource Technology. 2010;101:8671-8677.

Carver SM, Lepistö R, Tuovinen OH. Hydrolysis and metabolism of cellulose by an anaerobic, thermophilic consortium. julkaisussa Third International Symposium on Energy from Biomass and Waste, Venice, Italy, 8-11 November 2010. 2010. s. 1-9

Välimaa A-L. In vitro bioassays in bioactivity and residue assessments. Tampere: Tampere University of Technology, 2010. (Tampereen teknillinen yliopisto. Julkaisu).

Virolainen N, Välimaa A-L. Kehittämishanke: Tenttiin lukemisesta jatkuvaan oppimiseen - Tapausesimerkkinä Tampereen teknillisen yliopiston Nanobioteknologian opintojakso. julkaisussa Rutanen P, Rahkonen A, Jutila S, toimittajat, Tunnista, kehitä, arvioi - vaikuttavia käytäntöjä opetuksen ja opetussuunnitelman kehittämiseen. Uutisia opetuksen kehittämisestä Oulun yliopiston laitoksilla. 2010. s. 33-40

Wang H, Tolvanen K, Lehtomäki A, Puhakka J, Rintala J. Microbial community structure in anaerobic co-digestion of grass silage and cow manure in a laboratory continuously stirred tank reactor. BIODEGRADATION. 2010;21(1):135-146.

Lakaniemi A-M, Nevatalo LM, Kaksonen AH, Puhakka JA. Mine wastewater treatment using Phalaris arundinacea plant material hydrolyzate as substrate for sulfate-reducing bioreactor. Bioresource Technology. 2010;101(11):3931-3939.

Tolvanen K. Molecular methods for studying mixed hydrogen-fermenting microbial communities. Tampere: Tampere University of Technology, 2010. (Tampereen teknillinen yliopisto. Julkaisu).

Guglielmetti S, Taverniti V, Minuzzo M, Arioli S, Stuknyte M, Karp M et al. Oral bacteria as potential probiotics for the pharyngeal mucosa. Applied and Environmental Microbiology. 2010;76(12):3048-3058.

Bevilaqua D, Garcia Jr. O, Tuovinen OH. Oxidative dissolution of bornite by Acidithiobacillus ferrooxidans. Process Biochemistry. 2010;45(1):101-106.

Nurmi P, Özkaya B, Kaksonen AH, Tuovinen OH, Puhakka JA. Predictive modelling of Fe(III) precipitation in iron removal process for bioleaching circuits. Bioprocess and Biosystems Engineering. 2010;33(4):449-456.

Singh Gaur R, Cai L, Tuovinen OH, Mancl KM. Pretreatment of turkey fat-containing wastewater in coarse sand and gravel/coarse sand bioreactors. Bioresource Technology. 2010;101(3):1106-1110.

Wakeman KD, Erving L, Riekkola-Vanhanen ML, Puhakka JA. Silage supports sulfate reduction in the treatment of metals- and sulfate-containing waste waters. Water Research. 2010;44(17):4932-4939.

Kaksonen AH, Robertson WJ, Plumb JJ, Wylie JT, Bastow TP, Douglas GB et al. Sulfate-reducing fluidized-bed bioreactor processes for acidic metal- and sulfate-containing waters. julkaisussa SME Annual Meeting Feb. 28-Mar. 03, 2010, Phoenix, AZ, USA. 2010. s. 1-6

Ojala J, Wakeman K, Määttä K, Tiirola M, Puhakka J. TEVA-tutkimusprojekti jatkaa tekopohjavesitiedon täydentämistä. Vesitalous. 2010;(5):22-25.

Nevatalo LM, Bijmans MFM, Lens PNL, Kaksonen AH, Puhakka JA. The effect of sub-optimal temperature on specific sulfidogenic activity of mesophilic SRB in an H2-fed membrane bioreactor. Process Biochemistry. 2010;45(3):363-368.

Li C, Blencke H-M, Smith LC, Karp MT, Stensvåg K. Two recombinant peptides, SpStrongylocins 1 and 2, from Strongylocentrotus purpuratus, show antimicrobial activity against Gram-positive and Gram-negative bacteria. Developmental and Comparative Immunology. 2010;34(3):286-292.

Lappalainen JO, Karp MT, Juvonen R, Virta MPJ, Nurmi J. Comparison of the total mercury content in sediment samples with a mercury sensor bacteria test and Vibrio fischeri toxicity test. Environmental Toxicology. 2000 joulu;15(5):443-448.<443::AID-TOX12>3.0.CO;2-L

Tauriainen SM, Virta MPJ, Karp MT. Detecting bioavailable toxic metals and metalloids from natural water samples using luminescent sensor bacteria. Water Research. 2000 heinä;34(10):2661-2666.

Korpela MT, Kurittu JS, Karvinen JT, Karp MT. A recombinant Escherichia coli sensor strain for the detection of tetracyclines. Analytical Chemistry. 1998 marras 1;70(21):4457-4462.

Suominen AI, Karp MT, Mäntsälä PI. Fractionation of DNA with Sephacryl S-1000(R). Biochemistry Research International. 1984 helmi;8(2):209-215.

Karp MT, Hemmilä I, Mäntsälä PI, Suominen AI. Time-resolved europium fluorescence in enzyme activity measurements: a sensitive protease assay. Journal of applied biochemistry. 1983 joulu;5(6):399-403.

Karp MT, Raunio RP, Lövgren TN-E. Simultaneous extraction and combined bioluminescent assay of NAD+ and NADH. ANALYTICAL BIOCHEMISTRY. 1983 tammi;128(1):175-180.