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Hänninen, A., Salpavaara, T., Lyyra, I., Kroon, M., Lekkala, J., & Kellomäki, M. (2018). Bioresorbable Conductive Wire with Minimal Metal Content. ACS Biomaterials Science & Engineering, 5(2), 1134-1140. https://doi.org/10.1021/acsbiomaterials.8b01292

Santala, S., Efimova, E., & Santala, V. (2018). Dynamic decoupling of biomass and wax ester biosynthesis in Acinetobacter baylyi by an autonomously regulated switch. Metabolic Engineering Communications, 7, [e00078]. https://doi.org/10.1016/j.mec.2018.e00078

Lehtinen, T. (2018). Solar Fuels and Chemicals: Engineering Bacterial Platform for the Production of Long-Chain Hydrocarbons from Carbon Dioxide and Electricity. (Tampere University of Technology. Publication; Vuosikerta 1574). Tampere University of Technology.

Ryynänen, T., Pekkanen-Mattila, M., Shah, D., Kreutzer, J., Kallio, P., Lekkala, J., & Aalto-Setälä, K. (2018). Microelectrode array for noninvasive analysis of cardiomyocytes at the single-cell level. Japanese Journal of Applied Physics, 57(11), [117001]. https://doi.org/10.7567/JJAP.57.117001

Mehrang, S., Jauhiainen, M., Pietilä, J., Puustinen, J., Ruokolainen, J., & Nieminen, H. (2018). Identification of Parkinson's Disease Utilizing a Single Self-recorded 20-step Walking Test Acquired by Smartphone's Inertial Measurement Unit. teoksessa 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018 (Vuosikerta 2018-July, Sivut 2913-2916). [8512921] Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/EMBC.2018.8512921

Tarniceriu, A., Harju, J., Yousefi, Z. R., Vehkaoja, A., Parak, J., Yli-Hankala, A., & Korhonen, I. (2018). The Accuracy of Atrial Fibrillation Detection from Wrist Photoplethysmography. A Study on Post-Operative Patients. teoksessa 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018 (Vuosikerta 2018-July, Sivut 4844-4847). [8513197] IEEE. https://doi.org/10.1109/EMBC.2018.8513197

Bermejo-Velasco, D., Varghese, O. P., P. Oommen, O., Hilborn, J., & Nawale, G. N. (2018). Thiazolidine chemistry revisited: a fast, efficient and stable click-type reaction at physiological pH. Chemical Communications, 12507-12510. https://doi.org/10.1039/c8cc05405c

Jäntti, V., Ylinen, T., Subramaniyam, N. P., Kamata, K., Yli-Hankala, A., Kauppinen, P., & Sonkajärvi, E. (2018). Electroencephalographic signals during anesthesia recorded from surface and depth electrodes. International Journal of Radiation Biology, 94(10), 934-943. https://doi.org/10.1080/09553002.2018.1478159

Lehtinen, T., Virtanen, H., Santala, S., & Santala, V. (2018). Production of alkanes from CO2 by engineered bacteria. Biotechnology for Biofuels, 11, [228]. https://doi.org/10.1186/s13068-018-1229-2

Salmela, M., Sanmark, H., Efimova, E., Efimov, A., Hytönen, V. P., Lamminmäki, U., ... Santala, V. (2018). Molecular tools for selective recovery and detection of lignin-derived molecules. Green Chemistry, 20(12), 2829-2839. https://doi.org/10.1039/c8gc00490k

Gumulya, Y., Boxall, N. J., Khaleque, H. N., Santala, V., Carlson, R. P., & Kaksonen, A. H. (2018). In a quest for engineering acidophiles for biomining applications: Challenges and opportunities. Genes, 9(2), [116]. https://doi.org/10.3390/genes9020116

Kainulainen, T. P., Sirviö, J. A., Sethi, J., Hukka, T. I., & Heiskanen, J. P. (2018). UV-Blocking Synthetic Biopolymer from Biomass-Based Bifuran Diester and Ethylene Glycol. Macromolecules, 51(5), 1822-1829. https://doi.org/10.1021/acs.macromol.7b02457

Lehtinen, T., Efimova, E., Santala, S., & Santala, V. (2018). Improved fatty aldehyde and wax ester production by overexpression of fatty acyl-CoA reductases. Microbial Cell Factories, 17(1), [19]. https://doi.org/10.1186/s12934-018-0869-z

Okonkwo, O., Lakaniemi, A-M., Santala, V., Karp, M., & Mangayil, R. (2018). Quantitative Real-time PCR Monitoring Dynamics Of Thermotoga Neapolitana In Synthetic Co-Culture For Biohydrogen Production. International Journal of Hydrogen Energy, 43(6), 3133-3141. https://doi.org/10.1016/j.ijhydene.2017.12.002

Tienaho, J., Poikulainen, E., Sarjala, T., Muilu-Mäkelä, R., Santala, V., & Karp, M. (2018). A Bioscreening Technique for Ultraviolet Irradiation Protective Natural Substances. Photochemistry and Photobiology, 94(6), 1273-1280. https://doi.org/10.1111/php.12954

Sippola, R. J., Hadipour, A., Kastinen, T., Vivo, P., Hukka, T. I., Aernouts, T., & Heiskanen, J. P. (2017). Carbazole-based small molecule electron donors: Syntheses, characterization, and material properties. Dyes and Pigments, 150, 79-88. [j.dyepig.2017.11.014]. https://doi.org/10.1016/j.dyepig.2017.11.014

Lehtinen, T., Efimova, E., Tremblay, P. L., Santala, S., Zhang, T., & Santala, V. (2017). Production of long chain alkyl esters from carbon dioxide and electricity by a two-stage bacterial process. Bioresource Technology, 243, 30-36. https://doi.org/10.1016/j.biortech.2017.06.073

Doan, P., Nguyen, T., Yli-Harja, O., Candeias, N. R., & Kandhavelu, M. (2017). Effect of alkylaminophenols on growth inhibition and apoptosis of bone cancer cells. European Journal of Pharmaceutical Sciences, 107, 208–216. https://doi.org/10.1016/j.ejps.2017.07.016

Kaartinen, T., Laine-Ylijoki, J., Ahoranta, S., Korhonen, T., & Neitola, R. (2017). Arsenic Removal from Mine Waters with Sorption Techniques. Mine Water and the Environment, 36(2), 199-208. https://doi.org/10.1007/s10230-017-0450-8

Kaksonen, A. H., Särkijärvi, S., Puhakka, J. A., Peuraniemi, E., Junnikkala, S., & Tuovinen, O. H. (2017). Solid phase changes in chemically and biologically leached copper smelter slag. Minerals Engineering, 106, 97-101. https://doi.org/10.1016/j.mineng.2016.08.029

L.K. Sulonen, M., Lakaniemi, A-M., Kokko, M. E., & Puhakka, J. A. (2017). The effect of anode potential on bioelectrochemical and electrochemical tetrathionate degradation. Bioresource Technology, 226, 173-180. https://doi.org/10.1016/j.biortech.2016.12.023

Kaksonen, A. H., Särkijärvi, S., Peuraniemi, E., Junnikkala, S., Puhakka, J. A., & Tuovinen, O. H. (2017). Metal biorecovery in acid solutions from a copper smelter slag. Hydrometallurgy, 168, 135-140. https://doi.org/10.1016/j.hydromet.2016.08.014

Kannisto, M., Efimova, E., Karp, M., & Santala, V. (2016). Growth and wax ester production of an Acinetobacter baylyi ADP1 mutant deficient in exopolysaccharide capsule synthesis. Journal of Industrial Microbiology and Biotechnology, 1-7. https://doi.org/10.1007/s10295-016-1872-1

Işildar, A., van de Vossenberg, J., Rene, E. R., van Hullebusch, E. D., & Lens, P. N. L. (2016). Two-step bioleaching of copper and gold from discarded printed circuit boards (PCB). Waste Management, 57, 149–157. https://doi.org/10.1016/j.wasman.2015.11.033

Di Capua, F., Ahoranta, S. H., Papirio, S., Lens, P. N. L., & Esposito, G. (2016). Impacts of sulfur source and temperature on sulfur-driven denitrification by pure and mixed cultures of Thiobacillus. Process Biochemistry, 51(10), 1576-1584. https://doi.org/10.1016/j.procbio.2016.06.010

Keipi, T., Tolvanen, K. E. S., Tolvanen, H., & Konttinen, J. (2016). Thermo-catalytic decomposition of methane: The effect of reaction parameters on process design and the utilization possibilities of the produced carbon. Energy Conversion and Management, 126, 923-934. https://doi.org/10.1016/j.enconman.2016.08.060

Tampio, E., Marttinen, S., & Rintala, J. (2016). Liquid fertilizer products from anaerobic digestion of food waste: Mass, nutrient and energy balance of four digestate liquid treatment systems. Journal of Cleaner Production, 125, 22–32. https://doi.org/10.1016/j.jclepro.2016.03.127

Dessì, P., Jain, R., Singh, S., Seder-Colomina, M., van Hullebusch, E. D., Rene, E. R., ... Lens, P. N. L. (2016). Effect of temperature on selenium removal from wastewater by UASB reactors. Water Research, 94, 146-154. https://doi.org/10.1016/j.watres.2016.02.007

Mal, J., Nancharaiah, Y. V., Van Hullebusch, E. D., & Lens, P. N. L. (2016). Metal chalcogenide quantum dots: Biotechnological synthesis and applications. RSC Advances, 6(47), 41477-41495. https://doi.org/10.1039/c6ra08447h

Butti, S. K., Velvizhi, G., Sulonen, M. L. K., Haavisto, J. M., Oguz Koroglu, E., Yusuf Cetinkaya, A., ... Venkata Mohan, S. (2016). Microbial electrochemical technologies with the perspective of harnessing bioenergy: Maneuvering towards upscaling. Renewable and Sustainable Energy Reviews, 53, 462-476. https://doi.org/10.1016/j.rser.2015.08.058

Tolvanen, H., Keipi, T., & Raiko, R. (2016). A study on raw, torrefied, and steam-exploded wood: Fine grinding, drop-tube reactor combustion tests in N2/O2 and CO2/O2 atmospheres, particle geometry analysis, and numerical kinetics modeling. Fuel, 176, 153-164. https://doi.org/10.1016/j.fuel.2016.02.071

Kaksonen, A. H., Särkijärvi, S., Puhakka, J. A., Peuraniemi, E., Junnikkala, S., & Tuovinen, O. H. (2016). Chemical and bacterial leaching of metals from a smelter slag in acid solutions. Hydrometallurgy, 159, 46-53. https://doi.org/10.1016/j.hydromet.2015.10.032

Jaatinen, S., Lakaniemi, A-M., & Rintala, J. (2016). Use of diluted urine for cultivation of Chlorella vulgaris. Environmental Technology, 37(9), 1159-1170. https://doi.org/10.1080/09593330.2015.1105300

George Abraham, B. (2015). Fluorescent Protein Toolbox: Protein Engineering Broadens the Range of in vitro and in vivo Applications of Fluorescent Proteins. (Tampere University of Technology. Publication; Vuosikerta 1351). Tampere University of Technology.

Marjakangas, J. M., Chen, C. Y., Lakaniemi, A. M., Puhakka, J. A., Whang, L. M., & Chang, J. S. (2015). Simultaneous nutrient removal and lipid production with Chlorella vulgaris on sterilized and non-sterilized anaerobically pretreated piggery wastewater. Biochemical Engineering Journal, 103, 177-184. https://doi.org/10.1016/j.bej.2015.07.011

Marjakangas, J. M., Chen, C-Y., Lakaniemi, A-M., Puhakka, J. A., Whang, L-M., & Chang, J-S. (2015). Selecting an indigenous microalgal strain for lipid production in anaerobically treated piggery wastewater. Bioresource Technology, 191, 369-376. https://doi.org/10.1016/j.biortech.2015.02.075

Zou, G., Papirio, S., Lai, X., Wu, Z., Zou, L., Puhakka, J., & Ruan, R. (2015). Column leaching of low-grade sulfide ore from Zijinshan copper mine. International Journal of Mineral Processing, 139, 11-16. [2730]. https://doi.org/10.1016/j.minpro.2015.04.005

Marjakangas, J. M., Lakaniemi, A. M., Koskinen, P. E. P., Chang, J. S., & Puhakka, J. A. (2015). Lipid production by eukaryotic microorganisms isolated from palm oil mill effluent. Biochemical Engineering Journal, 99, 48-54. https://doi.org/10.1016/j.bej.2015.03.006

Nybond, S., Karp, M., Yrjönen, T., & Tammela, P. (2015). Bioluminescent whole-cell reporter gene assays as screening tools in the identification of antimicrobial natural product extracts. Journal of Microbiological Methods, 114, 54-56. https://doi.org/10.1016/j.mimet.2015.04.014

Nancharaiah, Y. V., & Lens, P. N. L. (2015). Selenium biomineralization for biotechnological applications. Trends in Biotechnology, 33(6), 323-330. https://doi.org/10.1016/j.tibtech.2015.03.004

Santala, S. (2015). Developing Synthetic Biology Tools and Model Chassis: Production of Bioenergy and High-Value Molecules. (Tampere University of Technology. Publication; Vuosikerta 1288). Tampere University of Technology.

Mangayil, R. (2015). Biohydrogen Production: A Protein to Community Level Perspective Study. (Tampere University of Technology. Publication; Vuosikerta 1282). Tampere University of Technology.

Mangayil, R., Aho, T., Karp, M., & Santala, V. (2015). Improved bioconversion of crude glycerol to hydrogen by statistical optimization of media components. Renewable Energy, 75, 583-589. https://doi.org/10.1016/j.renene.2014.10.051

Nybond, S., Ghemtio, L., Nawrot, D. A., Karp, M., Xhaard, H., & Tammela, P. (2015). Integrated in vitro-in silico screening strategy for the discovery of antibacterial compounds. Assay and Drug Development Technologies, 13(1), 25-33. https://doi.org/10.1089/adt.2014.625

Rosholm, T., Gois, P. M. P., Franzen, R., & R. Candeias, N. (2015). Glycerol as an Efficient Medium for the Petasis Borono-Mannich Reaction. Chemistryopen, 4(1), 39-46. https://doi.org/10.1002/open.201402066

Heiskanen, J. P., Manninen, V. M., Pankov, D., Omar, W. A. E., Kastinen, T., Hukka, T. I., ... Hormi, O. E. O. (2015). Aryl end-capped quaterthiophenes applied as anode interfacial layers in inverted organic solar cells. Thin Solid Films, 574, 196-206. https://doi.org/10.1016/j.tsf.2014.12.007

Di Capua, F., Papirio, S., Lens, P. N. L., & Esposito, G. (2015). Chemolithotrophic denitrification in biofilm reactors. Chemical Engineering Journal, 280, 643-657. https://doi.org/10.1016/j.cej.2015.05.131

Taskan, E., Özkaya, B., & Hasar, H. (2015). Combination of a novel electrode material and artificial mediators to enhance power generation in an MFC. Water Science and Technology, 71(3), 320-328. https://doi.org/10.2166/wst.2014.487

Nancharaiah, Y. V., Venkata Mohan, S., & Lens, P. N. L. (2015). Metals removal and recovery in bioelectrochemical systems: A review. Bioresource Technology, 195, 102-114. https://doi.org/10.1016/j.biortech.2015.06.058

Tienaho, J., Sarjala, T., Franzén, R., & Karp, M. (2015). Method with high-throughput screening potential for antioxidative substances using Escherichia coli biosensor katG'::lux. Journal of Microbiological Methods, 118, 78-80. [4723]. https://doi.org/10.1016/j.mimet.2015.08.018

Warwick, M. E. A., Barreca, D., Bontempi, E., Carraro, G., Gasparotto, A., Maccato, C., ... Mathur, S. (2015). Pt-functionalized Fe2O3 photoanodes for solar water splitting: the role of hematite nano-organization and the platinum redox state. Physical Chemistry Chemical Physics, 17(19), 12899-12907. https://doi.org/10.1039/c5cp01636c

Warwick, M. E. A., Kaunisto, K., Barreca, D., Carraro, G., Gasparotto, A., Maccato, C., ... Van Tendeloo, G. (2015). Vapor phase processing of α-Fe2O3 photoelectrodes for water splitting: An insight into the structure/property interplay. ACS Applied Materials and Interfaces, 7(16), 8667-8676. https://doi.org/10.1021/acsami.5b00919

Santala, S., Karp, M., & Santala, V. (2014). Rationally engineered synthetic coculture for improved biomass and product formation. PLoS ONE, 9(12), [e113786]. https://doi.org/10.1371/journal.pone.0113786

Ciranna, A. (2014). Biohydrogen production in extreme conditions: A comprehensive study of the fermentative metabolism of a polyextremophilic bacterium. (Tampere University of Technology. Publication; Vuosikerta 1228). Tampere: Tampere University of Technology.

Raghuwanshi, S., Deswal, D., Karp, M., & Kuhad, R. C. (2014). Bioprocessing of enhanced cellulase production from a mutant of Trichoderma asperellum RCK2011 and its application in hydrolysis of cellulose. Fuel, 124, 183-189. https://doi.org/10.1016/j.fuel.2014.01.107

Ciranna, A., Ferrari, R., Santala, V., & Karp, M. (2014). Inhibitory effects of substrate and soluble end products on biohydrogen production of the alkalithermophile Caloramator celer: Kinetic, metabolic and transcription analyses. International Journal of Hydrogen Energy, 39(12), 6391-6401. https://doi.org/10.1016/j.ijhydene.2014.02.047

Ciranna, A., Pawar, S. S., Santala, V., Karp, M., & van Niel, E. W. J. (2014). Assessment of metabolic flux distribution in the thermophilic hydrogen producer Caloramator celer as affected by external pH and hydrogen partial pressure. Microbial Cell Factories, 13(1), [48]. https://doi.org/10.1186/1475-2859-13-48

Santala, S., Efimova, E., Koskinen, P., Karp, M. T., & Santala, V. (2014). Rewiring the wax ester production pathway of acinetobacter baylyi ADP1. ACS Synthetic Biology, 3(3), 145-151. https://doi.org/10.1021/sb4000788

Seppälä, J. (2014). Application of Computational Methods for Fermentative Hydrogen Production. (Tampere University of Techonology. Publication; Vuosikerta 1191). Tampere University of Technology.

Höhn, J., Lehtonen, E., Rasi, S., & Rintala, J. (2014). A geographical information system (GIS) based methodology for determination of potential biomasses and sites for biogas plants in southern Finland. Applied Energy, 113, 1-10. https://doi.org/10.1016/j.apenergy.2013.07.005

Bevilaqua, D., Lahti-Tommila, H., Garcia Jr., O., Puhakka, J. A., & Tuovinen, O. H. (2014). Bacterial and chemical leaching of chalcopyrite concentrates as affected by the redox potential and ferric/ferrous iron ratio at 22 C. International Journal of Mineral Processing, 132, 1-7. https://doi.org/10.1016/j.minpro.2014.08.008

Virolainen, N., & Karp, M. (2014). Biosensors, Antibiotics and Food. teoksessa G. Thouand, & R. Marks (Toimittajat), Bioluminescence: Fundamentals and Applications in Biotechnology - Volume 2 (Sivut 153-185). (Advances in biochemical engineering : biotechnology; Vuosikerta 145). Springer. https://doi.org/10.1007/978-3-662-43619-6_5

Nissilä, M. E., Lay, C-H., & Puhakka, J. A. (2014). Dark fermentative hydrogen production from lignocellulosic hydrolyzates - A review. Biomass & Bioenergy, 67, 145-159. https://doi.org/10.1016/j.biombioe.2014.04.035

Papirio, S., Zou, G., Ylinen, A., Di Capua, F., Pirozzi, F., & Puhakka, J. A. (2014). Effect of arsenic on nitrification of simulated mining water. Bioresource Technology, 164, 149-154. https://doi.org/10.1016/j.biortech.2014.04.072

Zou, G., Papirio, S., Ylinen, A., Di Capua, F., Lakaniemi, A. M., & Puhakka, J. A. (2014). Fluidized-bed denitrification for mine waters. Part II: effects of Ni and Co. BIODEGRADATION, 25, 417-423. https://doi.org/10.1007/s10532-013-9670-1

Abraham, B. G., Santala, V., Tkachenko, N. V., & Karp, M. (2014). Fluorescent protein-based FRET sensor for intracellular monitoring of redox status in bacteria at single cell level. Analytical and Bioanalytical Chemistry, 406(28), 7195-7204. https://doi.org/10.1007/s00216-014-8165-1

Männistö, N. M., Ahola, N., Karp, M. T., Veiranto, M., & Kellomäki, M. (2014). In vitro bioluminescence used as a method for real-time inhibition zone testing for antibiotic-releasing composites. British Microbiology Research Journal, 4(2), 235-254. https://doi.org/10.9734/BMRJ/2014/6661

Jokela, P., & Lepistö, R. (2014). Lamella dissolved air flotation treatment of fish farming effluents as a part of an integrated farming and effluent treatment concept. Environmental Technology, 35(21), 2727-2733. https://doi.org/10.1080/09593330.2014.919035

Kinnunen, H. V., Koskinen, P. E. P., & Rintala, J. (2014). Mesophilic and thermophilic anaerobic laboratory-scale digestion of Nannochloropsis microalga residues. Bioresource Technology, 155, 314-322. https://doi.org/10.1016/j.biortech.2013.12.115

Kannisto, M., Aho, T., Karp, M., & Santala, V. (2014). Metabolic engineering of Acinetobacter baylyi ADP1 for improved growth on gluconate and glucose. Applied and Environmental Microbiology, 80(22), 7021-7027. https://doi.org/10.1128/AEM.01837-14

Guglielmetti, S., Zanoni, I., Balzaretti, S., Miriani, M., Taverniti, V., de Noni, I., ... Granucci, F. (2014). Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain. Applied and Environmental Microbiology, 80(17), 5170-5177. https://doi.org/10.1128/AEM.00761-14

Köroglu, E. O., Yilmaz Baysoy, D., Cetinkaya, A. Y., Özkaya, B., & Cakmakci, M. (2014). Novel design of a multitube microbial fuel cell (UM2FC) for energy recovery and treatment of membrane concentrates. Biomass & Bioenergy, 69, 58-65. https://doi.org/10.1016/j.biombioe.2014.07.014

Stuani, L., Lechaplais, C., Salminen, A. V., Segurens, B., Durot, M., Castelli, V., ... Perret, A. (2014). Novel metabolic features in Acinetobacter baylyi ADP1 revealed by a multiomics approach. Metabolomics. https://doi.org/10.1007/s11306-014-0662-x

Guglielmetti, S., Balzaretti, S., Taverniti, V., Miriani, M., Milani, C., Scarafoni, A., ... Karp, M. (2014). TgaA, a VirB1-like component belonging to a putative type IV secretion system of Bifidobacterium bifidum MIMBb75. Applied and Environmental Microbiology, 80(17), 5161-5169. https://doi.org/10.1128/AEM.01413-14

Rasi, S., Läntelä, J., & Rintala, J. (2014). Upgrading landfill gas using a high pressure water absorption process. Fuel, 115, 539-543. https://doi.org/10.1016/j.fuel.2013.07.082

Kivistö, A., Santala, V., & Karp, M. (2013). Non-sterile process for biohydrogen and 1,3-propanediol production from raw glycerol. International Journal of Hydrogen Energy, 38(27), 11749-11755. https://doi.org/10.1016/j.ijhydene.2013.06.119

Seppälä, J. J., Larjo, A., Aho, T., Yli-Harja, O., Karp, M. T., & Santala, V. (2013). Prospecting hydrogen production of Escherichia coli by metabolic network modeling. International Journal of Hydrogen Energy, 38(27), 11780-11789. https://doi.org/10.1016/j.ijhydene.2013.07.002

Hassan, S. S., Farhan, M., Mangayil, R., Huttunen, H., & Aho, T. (2013). Bioprocess data mining using regularized regression and random forests. BMC Systems Biology, 7(Suppl 1), [5]. https://doi.org/10.1186/1752-0509-7-S1-S5

Bayr, S., Kaparaju, P., & Rintala, J. (2013). Screening pretreatment methods to enhance thermophilic anaerobic digestion of pulp and paper mill wastewater treatment secondary sludge. Chemical Engineering Journal, 223, 479-486. https://doi.org/10.1016/j.cej.2013.02.119

Tähti, H., Kaparaju, P., & Rintala, J. (2013). Hydrogen and methane production in extreme thermophilic conditions in two-stage (upflow anaerobic sludge bed) UASB reactor system. International Journal of Hydrogen Energy, 38(12), 4997-5002. https://doi.org/10.1016/j.ijhydene.2013.02.058

Rasi, S., Seppälä, M., & Rintala, J. (2013). Organic silicon compounds in biogases produced from grass silage, grass and maize in laboratory batch assays. Energy, 52, 137-142. https://doi.org/10.1016/j.energy.2013.01.015

Kaparaju, P., Rasi, S., & Rintala, J. (2013). Biogas upgrading and compression. teoksessa N. E. Korres, P. O´Kiely, J. A. H. Benzie, & J. S. West (Toimittajat), Bioenergy Production by Anaerobic Digestion: Using Agricultural Biomass and Organic Wastes (Sivut 152-182). London: Routledge. https://doi.org/10.4324/9780203137697

Lakaniemi, A-M., Tuovinen, O. H., & Puhakka, J. A. (2013). Anaerobic conversion of microalgal biomass to sustainable energy carriers - A review. Bioresource Technology, 135(May), 222-231. https://doi.org/10.1016/j.biortech.2012.08.096

Ahola, N., Männistö, N., Veiranto, M., Karp, M., Rich, J., Efimov, A., ... Kellomäki, M. (2013). An in vitro study of composites of poly(L-lactide-co-e-caprolactone), ß-tricalcium phosphate and ciprofloxacin intended for local treatment of osteomyelitis. Biomatter, 3(2), 1-13. [e23162]. https://doi.org/10.4161/biom.23162

Nybond, S., Karp, M., & Tammela, P. (2013). Antimicrobial assay optimization and validation for HTS in 384-well format using a bioluminescent E. coli K-12 strain. European Journal of Pharmaceutical Sciences, 49(4), 782-789. https://doi.org/10.1016/j.ejps.2013.05.024

Mäkinen, A. E., Lay, C-H., Nissilä, M. E., & Puhakka, J. A. (2013). Bioelectricity production on xylose with a compost enrichment culture. International Journal of Hydrogen Energy, 38(35), 15606-15612. https://doi.org/10.1016/j.ijhydene.2013.04.137

Seppälä, M., Pyykkönen, V., Väisänen, A., & Rintala, J. (2013). Biomethane production from maize and liquid cow manure - Effect of share of maize, post-methanation potential and digestate characteristics. Fuel, 107, 209-216. https://doi.org/10.1016/j.fuel.2012.12.069

Kaartinen, T., Sormunen, K., & Rintala, J. (2013). Case study on sampling, processing and characterization of landfilled municipal solid waste in the view of landfill mining. Journal of Cleaner Production, 55, 56-66. https://doi.org/10.1016/j.jclepro.2013.02.036

Privalova, E., Rasi, S., Mäki-Arvela, P., Eränen, K., Rintala, J., Murzin, D. Y., & Mikkola, J-P. (2013). CO2 capture from biogas: absorbent selection. RSC Advances, 3(9), 2979-2994. https://doi.org/10.1039/C2RA23013E

Lay, C-H., Sen, B., Chen, C-C., Wu, J-H., Lee, S-C., & Lin, C-Y. (2013). Co-fermentation of water hyacinth and beverage wastewater in powder and pellet form for hydrogen production. Bioresource Technology, 135, 610-615. https://doi.org/10.1016/j.biortech.2012.06.094

Zou, G., Zengling, W., Xiaokang, L., Laichang, Z., Renman, R., Papirio, S., & Puhakka, J. (2013). Column bioleaching of low grade copper sulfide ore at extreme conditions for most mineral processing bacteria. Advanced Materials Research, 825, 318-321. https://doi.org/10.4028/www.scientific.net/AMR.825.318

Sormunen, K., Laurila, T., & Rintala, J. (2013). Determination of waste decay rate for a large Finnish landfill by calibrating methane generation models on the basis of methane recovery and emissions. Waste Management and Research, 31(10), 979-985. https://doi.org/10.1177/0734242X13490980

Futagami, T., Morono, Y., Terada, T., Kaksonen, A. H., & Inagaki, F. (2013). Distribution of dehalogenation activity in subseafloor sediments of the Nankai Trough subduction zone. Philosophical Transactions of the Royal Society B: Biological Sciences, 368(1616), 1-15. [20120249]. https://doi.org/10.1098/rstb.2012.0249

Ciranna, A., Larjo, A., Kivistö, A., Santala, V., Roos, C., & Karp, M. (2013). Draft genome sequence of the hydrogen- and ethanol-producing anaerobic alkalithermophilic bacterium Caloramator celer. Genome Announcements, 1(4), 1-2. https://doi.org/10.1128/genomeA.00471-13

Bevilaqua, D., Lahti, H., Suegama, P., Garcia Jr., O., Benedetti, A., Puhakka, J., & Tuovinen, O. (2013). Effect of NA-chloride on the bioleaching of a chalcopyrite concentrate in shake flasks and stirred tank bioreactors. Hydrometallurgy, 138, 1-13. https://doi.org/10.1016/j.hydromet.2013.06.008

Özkaya, B., Cetinkaya, A. Y., Cakmakci, M., Karadag, D., & Sahinkaya, E. (2013). Electricity generation from young landfill leachate in a microbial fuel cell with a new electrode material. Bioprocess and Biosystems Engineering, 36(4), 399-405. https://doi.org/10.1007/s00449-012-0796-z

Nissilä, M. E., Sulonen, M. L. K., & Puhakka, J. A. (2013). Enrichment of electrogens on xylose from anaerobi digester sample. teoksessa Proceedings of 13th World Congress on Anaerobic Digestion, 25th-28th June 2013, Santiago de Compostela, Spain (Anaerobic Digestion World Congress). IWA International Water Association.

Papirio, S., Ylinen, A., Zou, G., Peltola, M., Esposito, G., & Puhakka, J. A. (2013). Fluidized-bed denitrification for mine waters. Part I: low pH and temperature operation. BIODEGRADATION, 1-11. https://doi.org/10.1007/s10532-013-9671-0

Kaparaju, P., & Rintala, J. (2013). Generation of heat and power from biogas for stationary applications: boilers, gas engines and turbines, combined heat and power (CHP) plants and fuel cells. teoksessa A. Wellinger, J. Murphy, & D. Baxter (Toimittajat), The biogas handbook: Science, production and applications (Sivut 404-427). Woodhead Publishing.

Kivistö, A., Larjo, A., Ciranna, A., Santala, V., Roos, C., & Karp, M. (2013). Genome Sequence of Halanaerobium saccharolyticum subsp. saccharolyticum Strain DSM 6643T, a Halophilic Hydrogen-Producing Bacterium. Genome Announcements, 1(2), 1-2. https://doi.org/10.1128/genomeA.00187-13

Isohanni, P., Huehn, S., Aho, T., Alter, T., & Lyhs, U. (2013). Heat stress adaptation induces cross-protection against lethal acid stress conditions in Arcobacter butzleri but not in Campylobacter jejuni. Food Microbiology, 34(2), 431-435. https://doi.org/10.1016/j.fm.2013.02.001

Zou, G., Ylinen, A., Di Capua, F., Papirio, S., Lakaniemi, A-M., & Puhakka, J. (2013). Impact of heavy metals on denitrification of simulated mining wastewaters. Advanced Materials Research, 825, 500-503. https://doi.org/10.4028/www.scientific.net/AMR.825.500

Efimova, E., Marjakangas, J. M., Lakaniemi, A-M., Koskinen, P. E. P., & Puhakka, J. A. (2013). Lipid profile characterization of wastewaters from different origins. Water Science and Technology, 68(11), 2505-2514. https://doi.org/10.2166/wst.2013.538

Seppälä, J., Larjo, A., Aho, T., Kivistö, A., Karp, M., & Santala, VI. (2013). Modification of the Escherichia coli metabolic model LAF1260 based on anaerobic experiments. teoksessa R. Autio, I. Shmulevich, K. Strimmer, C. Wiuf, S. Sarbu, & O. Yli-Harja (Toimittajat), The 10th International Workshop on Computational Systems Biology, WCSB 2013, June 10-12, Tampere, Finland (Sivut 80-86). (International Workshop on Computational Systems Biology).

Karadag, D., Özkaya, B., Ölmez, E., Nissilä, M. E., CakmakCi, M., Yildiz, S., & Puhakka, J. A. (2013). Profiling of bacterial community in a full-scale aerobic composting plant. International Biodeterioration and Biodegradation, 77, 85-90. https://doi.org/10.1016/j.ibiod.2012.10.011

Seppälä, M., Laine, A., & Rintala, J. (2013). Screening of novel plants for biogas production in northern conditions. Bioresource Technology, 139, 355-362. https://doi.org/10.1016/j.biortech.2013.04.014

Taverniti, V., Stuknyte, M., Minuzzo, M., Arioli, S., De Noni, I., Scabiosi, C., ... Guglielmetti, S. (2013). S-Layer protein mediates the stimulatory effect of lactobacillus helveticus MIMLh5 on innate immunity. Applied and Environmental Microbiology, 79(4), 1221-1231. https://doi.org/10.1128/AEM.03056-12

Rismani-Yazdi, H., Carver, S. M., Christy, A. D., Yu, Z., Bibby, K., Peccia, J., & Tuovinen, O. H. (2013). Suppression of methanogenesis in cellulose-fed microbial fuel cells in relation to performance, metabolite formation, and microbial population. Bioresource Technology, 129, 281-288. https://doi.org/10.1016/j.biortech.2012.10.137

Seppälä, M., Pyykkönen, V., Laine, A., & Rintala, J. (2012). Methane production from maize in Finland - Screening for different maize varieties and plant parts. Biomass & Bioenergy, 46(November), 282-290. https://doi.org/10.1016/j.biombioe.2012.08.016

Bayr, S., & Rintala, J. (2012). Thermophilic anaerobic digestion of pulp and paper mill primary sludge and co-digestion of primary and secondary sludge. Water Research, 46(15), 4713-4720. https://doi.org/10.1016/j.watres.2012.06.033

Sivula, L., Sormunen, K., & Rintala, J. (2012). Leachate formation and characteristics from gasification and grate incineration bottom ash under landfill conditions. Waste Management, 32(4), 780-788. https://doi.org/10.1016/j.wasman.2011.11.012

Kivistö, A., Santala, V., & Karp, M. (2012). 1,3-Propanediol production and tolerance of a halophilic fermentative bacterium, Halanaerobium saccharolyticum subsp saccharolyticum. Journal of Biotechnology, 158(4), 242-247. https://doi.org/10.1016/j.jbiotec.2011.10.013

Mangayil, R., Karp, M., & Santala, V. (2012). Bioconversion of crude glycerol from biodiesel production to hydrogen. International Journal of Hydrogen Energy, 37(17), 12198-12204. https://doi.org/10.1016/j.ijhydene.2012.06.010

Özkaya, B., Akoglu, B., Karadag, D., Aci, G., Taskan, E., & Hasar, H. (2012). Bioelectricity production using a new electrode in a microbial fuel cell. Bioprocess and Biosystems Engineering, 35(7), 1219-1227. https://doi.org/10.1007/s00449-012-0709-1

Virolainen, N., Guglielmetti, S., Arioli, S., & Karp, M. (2012). Bioluminescence-based identification of nisin producers - A rapid and simple screening method for nisinogenic bacteria in food samples. International Journal of Food Microbiology, 158(12), 126-132. https://doi.org/10.1016/j.ijfoodmicro.2012.07.007

Puhakka, J. A., Karadag, D., & Nissilä, M. E. (2012). Comparison of mesophilic and thermophilic anaerobic hydrogen production by hot spring enrichment culture. International Journal of Hydrogen Energy, 37(21), 16453-16459. https://doi.org/10.1016/j.ijhydene.2012.02.121

Nissilä, M. E., Li, Y-C., Wu, S-Y., & Puhakka, J. A. (2012). Dark fermentative hydrogen production from neutralized acid hydrolysates of conifer pulp. Applied Biochemistry and Biotechnology, 168(8), 2160-2169. https://doi.org/10.1007/s12010-012-9925-z

Mäkinen, A. E., Nissilä, M. E., & Puhakka, J. A. (2012). Dark fermentative hydrogen production from xylose by a hot spring enrichment culture. International Journal of Hydrogen Energy, 37(17), 12234-12240. https://doi.org/10.1016/j.ijhydene.2012.05.158

Chu, C-Y., Sen, B., Lay, C-H., Lin, Y-C., & Lin, C-Y. (2012). Direct fermentation of sweet potato to produce maximal hydrogen and ethanol. Applied Energy, 100, 10-18. https://doi.org/10.1016/j.apenergy.2012.06.023

Bayr, S., Pakarinen, O., Korppoo, A., Liuksia, S., Väisänen, A., Kaparaju, P., & Rintala, J. (2012). Effect of additives on process stability of mesophilic anaerobic monodigestion of pig slaughterhouse waste. Bioresource Technology, 120(September), 106-113. https://doi.org/10.1016/j.biortech.2012.06.009

Chen, C-C., Sen, B., Chuang, Y-S., Tsai, C-J., & Lay, C-H. (2012). Effect of effluent recycle ratio in a continuous anaerobic biohydrogen production system. Journal of Cleaner Production, 32, 236-243. https://doi.org/10.1016/j.jclepro.2012.04.006

Hulatt, C. J., Lakaniemi, A-M., Puhakka, J. A., & Thomas, D. N. (2012). Energy Demands of Nitrogen Supply in Mass Cultivation of Two Commercially Important Microalgal Species, Chlorella vulgaris and Dunaliella tertiolecta. BioEnergy Research, 5(3), 669-684. https://doi.org/10.1007/s12155-011-9175-x

Ciranna, A., Santala, V., & Karp, M. (2012). Enhancing biohydrogen production of the alkalithermophile Thermobrachium celere. International Journal of Hydrogen Energy, 37(7), 5550-5558. https://doi.org/10.1016/j.ijhydene.2011.12.105

Lakaniemi, A-M., Hulatt, C. J., Wakeman, K. D., Thomas, D. N., & Puhakka, J. A. (2012). Eukaryotic and prokaryotic microbial communities during microalgal biomass production. Bioresource Technology, 124(November), 387-393. https://doi.org/10.1016/j.biortech.2012.08.048

Papirio, S. (2012). Fluidized-bed bioreactor applications for the treatment of metal-, sulfate- and nitrate-contaminated mine waters. (Università degli Studi di Cassino e del Lazio Meridionale). Università degli Studi di Cassino e del Lazio Meridionale.

Lakaniemi, A-M., Intihar, V. M., Tuovinen, O. H., & Puhakka, J. A. (2012). Growth of Chlorella vulgaris and associated bacteria in photobioreactors. Microbial Biotechnology, 5(1), 69-78. https://doi.org/10.1111/j.1751-7915.2011.00298.x

Lakaniemi, A-M., Intihar, V. M., Tuovinen, O. H., & Puhakka, J. A. (2012). Growth of Dunaliella tertiolecta and associated bacteria in photobioreactors. Journal of Industrial Microbiology and Biotechnology, 39(9), 1357-1365. https://doi.org/10.1007/s10295-012-1133-x

Carver, S. M., Nelson, M. C., Lepistö, R., Yu, Z., & Tuovinen, O. H. (2012). Hydrogen and volatile fatty acid production during fermentation of cellulosic sustrates by a thermophilic consortium at 50 and 60 °C. Bioresource Technology, 104(January), 424-431. https://doi.org/10.1016/j.biortech.2011.11.013

Nissilä, M. E., Li, Y-C., Wu, S-Y., Lin, C-Y., & Puhakka, J. A. (2012). Hydrogenic and methanogenic fermentation of birch and conifer pulps. Applied Energy, 100(December), 58-65. https://doi.org/10.1016/j.apenergy.2012.06.015

Taverniti, V., Minuzzo, M., Arioli, S., Junttila, I., Hämäläinen, S., Turpeinen, H., ... Guglielmetti, S. (2012). In Vitro functional and immunomodulatory properties of the Lactobacillus helveticus MIMLh5-Streptococcus salivarius ST3 association that are relevant to the development of a Pharyngeal probiotic product. Applied and Environmental Microbiology, 78(12), 4209-4216. https://doi.org/10.1128/AEM.00325-12

Läntelä, J., Rasi, S., Lehtinen, J., & Rintala, J. (2012). Landfill gas upgrading with pilot-scale water scrubber: Performance assessment with adsorption water recycling. Applied Energy, 92(April), 307-314. https://doi.org/10.1016/j.apenergy.2011.10.011

Sharma, K. K., Sharma, S., Karp, M., & Kuhad, R. C. (2012). Ligninolytic enzymes improve soil DNA purity: Solution to methodological challenges of soil metagenomics. Journal of Molecular Catalysis B: Enzymatic, 83(November), 73-79. https://doi.org/10.1016/j.molcatb.2012.07.010

Bayr, S., Rantanen, M., Kaparaju, P., & Rintala, J. (2012). Mesophilic and thermophilic anaerobic co-digestion of rendering plant and slaughterhouse wastes. Bioresource Technology, 104(January), 28-36. https://doi.org/10.1016/j.biortech.2011.09.104

Halinen, A-K., Beecroft, N. J., Määttä, K., Nurmi, P., Laukkanen, K., Kaksonen, A. H., ... Puhakka, J. A. (2012). Microbial community dynamics during a demonstration-scale bioheap leaching operation. Hydrometallurgy, 125-126, 34-41. https://doi.org/10.1016/j.hydromet.2012.05.001

Santala, S., Karp, M., & Santala, V. (2012). Monitoring alkane degradation by single biobrick integration to an optimal cellular framework. ACS Synthetic Biology, 1(2), 60-64. https://doi.org/10.1021/sb2000066

Ahola, N., Veiranto, M., Männistö, N., Karp, M., Rich, J., Efimov, A., ... Kellomäki, M. (2012). Processing and sustained in vitro release of rifampicin containing composites to enhance the treatment of osteomyelitis. Biomatter, 2(4), 1-13. https://doi.org/10.4161/biom.22793

Lakaniemi, A-M., Tuovinen, O. H., & Puhakka, J. A. (2012). Production of Electricity and Butanol from Microalgal Biomass in Microbial Fuel Cells. BioEnergy Research, 5(2), 481-491. https://doi.org/10.1007/s12155-012-9186-2

Kumar, G., Lay, C-H., Chu, C-Y., Wu, J-H., Lee, S-C., & Lin, C-Y. (2012). Seed inocula for biohydrogen production from biodiesel solid residues. International Journal of Hydrogen Energy, 37(29), 15489-15495. https://doi.org/10.1016/j.ijhydene.2012.04.016

Li, Y-C., Nissilä, M. E., Wu, S-Y., Lin, C-Y., & Puhakka, J. A. (2012). Silage as source of bacteria and electrons for dark fermentative hydrogen production. International Journal of Hydrogen Energy, 37(20), 15518-15524. https://doi.org/10.1016/j.ijhydene.2012.04.060

Kandhavelu, M., Paturu, L., Mizar, A., Mahmudov, K. T., Kopylovich, M. N., Karp, M., ... Ribeiro, A. S. (2012). Synthesis, characterization and antimicrobial activity of arylhydrazones of methylene active compounds. Pharmaceutical Chemistry Journal, 46(3), 157-164. https://doi.org/10.1007/s11094-012-0751-y

Sivula, L., Oikari, A., & Rintala, J. (2012). Toxicity of waste gasification bottom ash leachate. Waste Management, 32(6), 1171-1178. https://doi.org/10.1016/j.wasman.2012.01.002

Bomberg, M., Munster, U., Pumpanen, J., Ilvesniemi, H., & Heinonsalo, J. (2011). Archaeal communities in boreal forest tree rhizospheres respond to changing soil temperatures. Microbial Ecology, 62(1), 205-217. https://doi.org/10.1007/s00248-011-9837-4

Carver, S. M., Vuoriranta, P., & Tuovinen, O. H. (2011). A thermophilic microbial fuel cell design. Journal of Power Sources, 196(8), 3757-3760. https://doi.org/10.1016/j.jpowsour.2010.12.088

Bevilaqua, D., Garcia Jr, O., Suegama, P. H., Benedetti, A. V., Lahti, H., Puhakka, J., & Tuovinen, O. H. (2011). Avaliacao eletroquimica de residuos de biolixiviacao da calcopirita (CuFeS2) por acidithiobacillus ferrooxidans. teoksessa XXIV ENTMME 2011, Encontro Nacional de Tratamento de Minerios e Metalurgia Extrativa, 16 a 19 de outubro de 2011, Salvador/Bahia (Sivut 1179-1186). (Encontro Nacional de Tratamento de Minerios e Metalurgia Extrativa). Encontro Nacional de Tratamento de Minerios e Metalurgia Extrativa.

George Abraham, B., Tkachenko, N. V., Santala, V., Lemmetyinen, H., & Karp, M. (2011). Bidirectional fluorescence resonance energy transfer (FRET) in mutated and chemically modified yellow fluorescent protein (YFP). Bioconjugate Chemistry, 22(2), 227-234. https://doi.org/10.1021/bc100372u

Lakaniemi, A-M., Hulatt, C. J., Thomas, D. N., Tuovinen, O. H., & Puhakka, J. A. (2011). Biogenic hydrogen and methane production from Chlorella vulgaris and Dunaliella tertiolecta biomass. Biotechnology for Biofuels, 4(1), 1-12. [34]. https://doi.org/10.1186/1754-6834-4-34

Lakaniemi, A-M., Koskinen, P. E. P., Nevatalo, L. M., Kaksonen, A. H., & Puhakka, J. A. (2011). Biogenic hydrogen and methane production from reed canary grass. Biomass & Bioenergy, 35(2), 773-780. https://doi.org/10.1016/j.biombioe.2010.10.032

Kaksonen, A. H., Lavonen, L., Kuusenaho, M., Kolli, A., Närhi, H., Vestola, E., ... Tuovinen, O. H. (2011). Bioleaching and recovery of metals from final slag waste of the copper smelting industry. Minerals Engineering, 24(11), 1113-1121. https://doi.org/10.1016/j.mineng.2011.02.011

Wakeman, K. D., Honkavirta, P., & Puhakka, J. A. (2011). Bioleaching of flotation by-products of talc production permits the separation of nickel and cobalt from iron and arsenic. Process Biochemistry, 46, 1589-1598. https://doi.org/10.1016/j.procbio.2011.04.016

Smolander, O-P., Kandhavelu, M., Mannerström, H., Lihavainen, E., Kalaichelvan, S., Healy, S., ... Ribeiro, A. S. (2011). Cell-to-cell diversity in protein levels of a gene driven by a tetracycline inducible promoter. BMC Molecular Biology, 12, 1-27. [21]. https://doi.org/10.1186/1471-2199-12-21

Kivistö, A., Santala, V., & Karp, M. (2011). Closing the 1,3-propanediol route enhances hydrogen production from glyserol by Halanaerobium saccharolyticum subsp. saccharolyticum. International Journal of Hydrogen Energy, 36(12), 7074-7080. https://doi.org/10.1016/j.ijhydene.2011.03.012

Santala, S., Larjo, A., Aho, T., Karp, M., & Santala, V. (2011). Construction and Modelling of an Artificial Microecosystem. teoksessa H. Koeppl, J. Acimovic, J. Kesseli, T. Mäki-Marttunen, A. Larjo, & O. Yli-Harja (Toimittajat), Eight International Workshop on Computational Systems Biology, WCSB 2011, June 6-8, Zurich, Switzerland. TICSP series (Sivut 225-225). (International Workshop on Computational Systems Biology WCSB; Nro 57). Zurich: WCSB 2011.

Smolander, O-P., Kandhavelu, M., Mannerström, H., Lihavainen, E., Kalaichelvan, S., Healy, S., ... Ribeiro, A. S. (2011). Dynamics of Gene Expression under Tetracycline Inducible Promoters. teoksessa H. Koeppl, J. Acimovic, J. Kesseli, T. Mäki-Marttunen, A. Larjo, & O. Yli-Harja (Toimittajat), Eight International Workshop on Computational Systems Biology, WCSB 2011, June 6-8, Zurich, Switzerland. TICSP series (Sivut 227-227). (International Workshop on Computational Systems Biology WCSB; Nro 57). Zurich: WCSB 2011.

Nissilä, M. E., Tähti, H. P., Rintala, J. A., & Puhakka, J. A. (2011). Effects of heat treatment on hydrogen production potential and microbial community of thermophilic compost enrichment cultures. Bioresource Technology, 102(6), 4501-4506. https://doi.org/10.1016/j.biortech.2010.12.072

Seppälä, J. J., Puhakka, J. A., Yli-Harja, O., Karp, M. T., & Santala, V. (2011). Fermentative hydrogen production by Clostridium butyricum and Escherichia coli in pure and cocultures. International Journal of Hydrogen Energy, 36(17), 10701-10708. https://doi.org/10.1016/j.ijhydene.2011.05.189

Mangayil, R., Santala, V., & Karp, M. (2011). Fermentative hydrogen production from different sugars by Citrobacter sp. CMC-1 in batch culture. International Journal of Hydrogen Energy, 36, 15187-15194. https://doi.org/10.1016/j.ijhydene.2011.08.076

Kivistö, A., & Karp, M. T. (2011). Halophilic anaerobic fermentative bacteria: Review. Journal of Biotechnology, 152(4), 114-124. https://doi.org/10.1016/j.jbiotec.2010.08.014

Puhakka, J. (2011). IEA-HIA Task Semiannual Report 2010 from Finland. IEA.

Santala, S., Efimova, E., Kivinen, V., Larjo, A., Aho, T., Karp, M., & Santala, V. (2011). Improved triacylglycerol production in Acinetobacter baylyi ADP1 by metabolic engineering. Microbial Cell Factories, 10(36), 1-10. https://doi.org/10.1186/1475-2859-10-36

Lindsasy, M. B. J., Wakeman, K. D., Rowe, O. F., Grail, B. M., Ptacek, C. J., Blowes, D. W., & Johnson, D. B. (2011). Microbiology and geochemistry of mine tailings amended with organic carbon for passive treatment of pore water. Geomicrobiology Journal, 28(3), 229-241. https://doi.org/10.1080/01490451.2010.493570

Tolvanen, K. E. S., & Karp, M. T. (2011). Molecular methods for characterizing mixed microbial communities in hydrogen-fermenting systems. International Journal of Hydrogen Energy, 36(9), 5280-5288. https://doi.org/10.1016/j.ijhydene.2011.01.029

Santala, S., Efimova, E., Karp, M., & Santala, V. (2011). Real-Time monitoring of intracellular wax ester metabolism. Microbial Cell Factories, 10(1), 1-8. [75]. https://doi.org/10.1186/1475-2859-10-75

Tolvanen, K. E. S., Mangayil, R. K., Karp, M. T., & Santala, V. P. (2011). Simple enrichment system for hydrogen producers. Applied and Environmental Microbiology, 77(12), 4246-4248. https://doi.org/10.1128/AEM.05150-11

Carver, S. M., Hulatt, C. J., Thomas, D. N., & Tuovinen, O. H. (2011). Thermophilic, anaerobic co-digestion of microalgal biomass and cellulose for H2 production. BIODEGRADATION, 22(4), 805-814. https://doi.org/10.1007/s10532-010-9419-z

Nissilä, M. E., Tähti, H. P., Rintala, J. A., & Puhakka, J. A. (2011). Thermophilic hydrogen production from cellulose with rumen fluid enrichment cultures: Effects of different heat treatments. International Journal of Hydrogen Energy, 36(2), 1482-1490. https://doi.org/10.1016/j.hydene.2010.11.010

Bhatti, T. M., Bigham, J. M., Vuorinen, A., & Tuovinen, O. H. (2011). Weathering of biotite in Acidithiobacillus ferrooxidans cultures. Geomicrobiology Journal, 28(2), 130-134. https://doi.org/10.1080/01490451003720901

Bhatti, T. M., Bigham, J. M., Vuorinen, A., & Tuovinen, O. H. (2011). Weathering of phlogopite in simulated bioleaching solutions. International Journal of Mineral Processing, 98(1-2), 30-34. https://doi.org/10.1016/j.minpro.2010.10.004

Nevatalo, L. (2010). Bioreactor applications utilizing mesophilic sulfate-reducing bacteria for treatment of mine wastewaters at 9-35 oC. (Tampere University of Technology. Publication; Vuosikerta 910). Tampere: Tampere University of Technology.

Vestola, E. A., Kuusenaho, M. K., Närhi, H. M., Tuovinen, O. H., Puhakka, J. A., Plumb, J. J., & Kaksonen, A. H. (2010). Acid bioleaching of solid waste materials from copper, steel and recycling industries. Hydrometallurgy, 103(1-4), 74-79. https://doi.org/10.1016/j.hydromet.2010.02.017

Guglielmetti, S., Taverniti, V., Minuzzo, M., Arioli, S., Zanoni, I., Stuknyte, M., ... Mora, D. (2010). A dairy bacterium displays in vitro probiotic propesties for the pharyngeal mucosa by antagonizing group a streptococci and modulating the immune response. Infection and Immunity, 78(11), 4734-4743. https://doi.org/10.1128/IAI.00559-10

Arioli, S., Ragg, E., Scaglioni, L., Fessas, D., Signorelli, M., Karp, M., ... Mora, D. (2010). Alkalizing reactions streamline cellular metabolism in acidogenic microorganisms. PLoS ONE, 5(11, e15520), 1-8. https://doi.org/10.1371/journal.pone.0015520

Bhatti, T. M., Bigham, J. M., Riekkola-Vanhanen, M., & Tuovinen, O. H. (2010). Altered mineralogy associated with stirred tank bioreactor leaching of a black schist ore. Hydrometallurgy, 100(3-4), 181-184. https://doi.org/10.1016/j.hydromet.2009.11.010

Välimaa, A-L., Kivistö, A. T., Leskinen, P. I., & Karp, M. T. (2010). A novel biosensor for the detection of zearalenone family mycotoxins in milk. Journal of Microbiological Methods, 80(1), 44-48. https://doi.org/10.1016/j.mimet.2009.10.017

Pikkemaat, M. G., Rapallini, M. L. B. A., Karp, M. T., & Elferink, J. W. A. (2010). Application of a luminescent bacterial biosensor for the detection of tetracyclines in routine analysis of poultry muscle samples. Food Additives and Contaminants Part A: Chemistry Analysis Control Exposure and Risk Assessment, 27(8), 1112-1117. https://doi.org/10.1080/19440041003794866

Tao, J., Mancl, K. M., & Tuovinen, O. H. (2010). Attenuation of pollutants in sanitary sewer overflow: Comparative evaluation of treatment with fixed media bioreactors. Bioresource Technology, 101(6), 1781-1786. https://doi.org/10.1016/j.biortech.2009.10.038

Kolehmainen, R. E., Crochet, L. M., Kortelainen, N. M., Langwaldt, J. H., & Puhakka, J. A. (2010). Biodegradation of aqueous organic matter over seasonal changes: bioreactor experiments with indigenous lake water bacteria. Journal of Environmental Engineering: ASCE, 136(6), 607-615. https://doi.org/10.1061/(ASCE)EE.1943-7870.0000197

Kivistö, A., Santala, V., & Karp, M. (2010). Biohydrogen and 1,3-Propanediol production using halophilic fermentative bacteria. teoksessa ESF-Bielefeld-CeBiTec Conference, Microbes and Industrial Biotechnology, Bielefeld, Germany, 21-24 November 2010, Booklet of Abstracts (Sivut 21-21)

Nevatalo, L. M., Mäkinen, A. E., Kaksonen, A. H., & Puhakka, J. A. (2010). Biological hydrogen slufide production in an ethanol-lactate fed fluidized-bed bioreactor. Bioresource Technology, 101(1), 276-284. https://doi.org/10.1016/j.biortech.2009.07.042

Nurmi, P., Özkaya, B., Sasaki, K., Kaksonen, A. H., Riekkola-Vanhanen, M., Tuovinen, O. H., & Puhakka, J. A. (2010). Biooxidation and precipitation for iron and sulfate removal from heap bioleaching effluent streams. Hydrometallurgy, 101(1-2), 7-14. https://doi.org/10.1016/j.hydromet.2009.11.004

Bigham, J. M., Jones, F. S., Özkaya, B., Sahinkaya, E., Puhakka, J. A., & Tuovinen, O. H. (2010). Characterization of jarosites produced by chemical synthesis over a temperature gradient from 2 to 40 °C. International Journal of Mineral Processing, 94(3-4), 121-128. https://doi.org/10.1016/j.minpro.2010.01.005

Sasaki, K., Takatsugi, K., Kaneko, K., Kozai, N., Ohnuki, T., Tuovinen, O. H., & Hirajima, T. (2010). Characterization of secondary arsenic-bearing precipitates formed in the bioleaching of enargite by Acidithiobacillus ferrooxidans. Hydrometallurgy, 104(3-4), 424-431. https://doi.org/10.1016/j.hydromet.2009.12.012

Karadag, D., & Puhakka, J. A. (2010). Direction of glucose fermentation towards hydrogen or ethanol production through on-line pH control. International Journal of Hydrogen Energy, 35(19), 10245-10251. https://doi.org/10.1016/j.ijhydene.2010.07.139

Karadag, D., & Puhakka, J. A. (2010). Effect of changing temperature on anaerobic hydrogen production and microbial community composition in an open-mixed culture bioreactor. International Journal of Hydrogen Energy, 35(20), 10954-10959. https://doi.org/10.1016/j.ijhydene.2010.07.070

Karadag, D., & Puhakka, J. A. (2010). Enhancement of anaerobic hydrogen production by iron and nickel. International Journal of Hydrogen Energy, 35(16), 8554-8560. https://doi.org/10.1016/j.ijhydene.2010.04.174

Tolvanen, K. E. S., Santala, V. P., & Karp, M. T. (2010). [FeFe]-hydrogenase gene quantification and melting curve analysis from hydrogen-fermenting bioreactor samples. International Journal of Hydrogen Energy, 35(8), 3433-3439. https://doi.org/10.1016/j.ijhydene.2010.01.132

Gramp, J. P., Bigham, J. M., Jones, F. S., & Tuovinen, O. H. (2010). Formation of Fe-sulfides in cultures of sulfate-reducing bacteria. Journal of Hazardous Materials, 175(1-3), 1062-1067. https://doi.org/10.1016/j.jhazmat.2009.10.119

Nevatalo, L. M., Bijmans, M. F. M., Lens, P. N. L., Kaksonen, A. H., & Puhakka, J. A. (2010). Hydrogenotrophic sulfate reduction in a gas-lift bioreactor operated at 9°C. Journal of Microbiology and Biotechnology, 20(3), 615-621. https://doi.org/10.4014/jmb.0906.06016

Kivistö, A., Santala, V., & Karp, M. (2010). Hydrogen production from glycerol using halophilic fermentative bacteria. Bioresource Technology, 101, 8671-8677. https://doi.org/10.1016/j.biortech.2010.06.066

Carver, S. M., Lepistö, R., & Tuovinen, O. H. (2010). Hydrolysis and metabolism of cellulose by an anaerobic, thermophilic consortium. teoksessa Third International Symposium on Energy from Biomass and Waste, Venice, Italy, 8-11 November 2010 (Sivut 1-9)

Välimaa, A-L. (2010). In vitro bioassays in bioactivity and residue assessments. (Tampereen teknillinen yliopisto. Julkaisu; Vuosikerta 933). Tampere: Tampere University of Technology.

Virolainen, N., & Välimaa, A-L. (2010). Kehittämishanke: Tenttiin lukemisesta jatkuvaan oppimiseen - Tapausesimerkkinä Tampereen teknillisen yliopiston Nanobioteknologian opintojakso. teoksessa P. Rutanen, A. Rahkonen, & S. Jutila (Toimittajat), Tunnista, kehitä, arvioi - vaikuttavia käytäntöjä opetuksen ja opetussuunnitelman kehittämiseen. Uutisia opetuksen kehittämisestä Oulun yliopiston laitoksilla (Sivut 33-40)

Wang, H., Tolvanen, K., Lehtomäki, A., Puhakka, J., & Rintala, J. (2010). Microbial community structure in anaerobic co-digestion of grass silage and cow manure in a laboratory continuously stirred tank reactor. BIODEGRADATION, 21(1), 135-146. https://doi.org/10.1007/s10532-009-9288-5

Lakaniemi, A-M., Nevatalo, L. M., Kaksonen, A. H., & Puhakka, J. A. (2010). Mine wastewater treatment using Phalaris arundinacea plant material hydrolyzate as substrate for sulfate-reducing bioreactor. Bioresource Technology, 101(11), 3931-3939. https://doi.org/10.1016/j.biortech.2010.01.020

Tolvanen, K. (2010). Molecular methods for studying mixed hydrogen-fermenting microbial communities. (Tampereen teknillinen yliopisto. Julkaisu; Vuosikerta 911). Tampere: Tampere University of Technology.

Guglielmetti, S., Taverniti, V., Minuzzo, M., Arioli, S., Stuknyte, M., Karp, M., & Mora, D. (2010). Oral bacteria as potential probiotics for the pharyngeal mucosa. Applied and Environmental Microbiology, 76(12), 3048-3058. https://doi.org/10.1128/AEM.00109-10

Bevilaqua, D., Garcia Jr., O., & Tuovinen, O. H. (2010). Oxidative dissolution of bornite by Acidithiobacillus ferrooxidans. Process Biochemistry, 45(1), 101-106. https://doi.org/10.1016/j.procbio.2009.08.013

Nurmi, P., Özkaya, B., Kaksonen, A. H., Tuovinen, O. H., & Puhakka, J. A. (2010). Predictive modelling of Fe(III) precipitation in iron removal process for bioleaching circuits. Bioprocess and Biosystems Engineering, 33(4), 449-456. https://doi.org/10.1007/s00449-009-0346-5

Singh Gaur, R., Cai, L., Tuovinen, O. H., & Mancl, K. M. (2010). Pretreatment of turkey fat-containing wastewater in coarse sand and gravel/coarse sand bioreactors. Bioresource Technology, 101(3), 1106-1110. https://doi.org/10.1016/j.biortech.2009.08.078

Wakeman, K. D., Erving, L., Riekkola-Vanhanen, M. L., & Puhakka, J. A. (2010). Silage supports sulfate reduction in the treatment of metals- and sulfate-containing waste waters. Water Research, 44(17), 4932-4939. https://doi.org/10.1016/j.watres.2010.07.025

Kaksonen, A. H., Robertson, W. J., Plumb, J. J., Wylie, J. T., Bastow, T. P., Douglas, G. B., ... Puhakka, J. (2010). Sulfate-reducing fluidized-bed bioreactor processes for acidic metal- and sulfate-containing waters. teoksessa SME Annual Meeting Feb. 28-Mar. 03, 2010, Phoenix, AZ, USA (Sivut 1-6)

Ojala, J., Wakeman, K., Määttä, K., Tiirola, M., & Puhakka, J. (2010). TEVA-tutkimusprojekti jatkaa tekopohjavesitiedon täydentämistä. Vesitalous, (5), 22-25.

Nevatalo, L. M., Bijmans, M. F. M., Lens, P. N. L., Kaksonen, A. H., & Puhakka, J. A. (2010). The effect of sub-optimal temperature on specific sulfidogenic activity of mesophilic SRB in an H2-fed membrane bioreactor. Process Biochemistry, 45(3), 363-368. https://doi.org/10.1016/j.procbio.2009.10.007

Li, C., Blencke, H-M., Smith, L. C., Karp, M. T., & Stensvåg, K. (2010). Two recombinant peptides, SpStrongylocins 1 and 2, from Strongylocentrotus purpuratus, show antimicrobial activity against Gram-positive and Gram-negative bacteria. Developmental and Comparative Immunology, 34(3), 286-292. https://doi.org/10.1016/j.dci.2009.10.006

Lappalainen, J. O., Karp, M. T., Juvonen, R., Virta, M. P. J., & Nurmi, J. (2000). Comparison of the total mercury content in sediment samples with a mercury sensor bacteria test and Vibrio fischeri toxicity test. Environmental Toxicology, 15(5), 443-448. https://doi.org/10.1002/1522-7278(2000)15:5<443::AID-TOX12>3.0.CO;2-L

Tauriainen, S. M., Virta, M. P. J., & Karp, M. T. (2000). Detecting bioavailable toxic metals and metalloids from natural water samples using luminescent sensor bacteria. Water Research, 34(10), 2661-2666. https://doi.org/10.1016/S0043-1354(00)00005-1

Korpela, M. T., Kurittu, J. S., Karvinen, J. T., & Karp, M. T. (1998). A recombinant Escherichia coli sensor strain for the detection of tetracyclines. Analytical Chemistry, 70(21), 4457-4462. https://doi.org/10.1021/ac980740e

Suominen, A. I., Karp, M. T., & Mäntsälä, P. I. (1984). Fractionation of DNA with Sephacryl S-1000(R). Biochemistry Research International, 8(2), 209-215.

Karp, M. T., Hemmilä, I., Mäntsälä, P. I., & Suominen, A. I. (1983). Time-resolved europium fluorescence in enzyme activity measurements: a sensitive protease assay. Journal of applied biochemistry, 5(6), 399-403.

Karp, M. T., Raunio, R. P., & Lövgren, T. N-E. (1983). Simultaneous extraction and combined bioluminescent assay of NAD+ and NADH. ANALYTICAL BIOCHEMISTRY, 128(1), 175-180. https://doi.org/10.1016/0003-2697(83)90359-7