Johansson, JK, Karema-Jokinen, VI, Hakanen, S, Jylhä, A, Uusitalo, H, Vihinen-Ranta, M, Skottman, H, Ihalainen, TO & Nymark, S 2019, 'Sodium channels enable fast electrical signaling and regulate phagocytosis in the retinal pigment epithelium', BMC BIOLOGY, Vuosikerta. 17, Nro 1, 63.

Manna, M, Nieminen, T & Vattulainen, I 2019, 'Understanding the Role of Lipids in Signaling Through Atomistic and Multiscale Simulations of Cell Membranes', ANNUAL REVIEW OF BIOPHYSICS, Vuosikerta. 48, Sivut 421-439.

Liimatainen, K, Kananen, L, Latonen, L & Ruusuvuori, P 2019, 'Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks', BMC Bioinformatics, Vuosikerta. 20, Nro 1, 80.

Startceva, S, Kandavalli, VK, Visa, A & Ribeiro, AS 2019, 'Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression', Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, Vuosikerta. 1862, Nro 2, Sivut 119-128.

Laulumaa, S, Nieminen, T, Raasakka, A, Krokengen, OC, Safaryan, A, Hallin, EI, Brysbaert, G, Lensink, MF, Ruskamo, S, Vattulainen, I & Kursula, P 2018, 'Structure and dynamics of a human myelin protein P2 portal region mutant indicate opening of the β barrel in fatty acid binding proteins', BMC Structural Biology, Vuosikerta. 18, Nro 1, 8.

Neeli-Venkata, R, Oliveira, SMD, Martins, L, Startceva, S, Bahrudeen, M, Fonseca, JM, Minoia, M & Ribeiro, AS 2018, 'The precision of the symmetry in Z-ring placement in Escherichia coli is hampered at critical temperatures', Physical Biology, Vuosikerta. 15, Nro 5, 056002.

Ferreira, ARV, Haapanen, J, Mäkelä, JM, Bratvold, JE, Nilsen, O, Tuominen, M, Alves, VD & Coelhoso, IM 2017, 'Comparison of different coating techniques on the properties of FucoPol films', International Journal of Biological Macromolecules, Vuosikerta. 103, Sivut 268-274.

Tripathi, S, Lloyd-Price, J, Ribeiro, A, Yli-Harja, O, Dehmer, M & Emmert-Streib, F 2017, 'sgnesR: An R package for simulating gene expression data from an underlying real gene network structure considering delay parameters', BMC Bioinformatics, Vuosikerta. 18, Nro 1, 325.

Rahmatallah, Y, Zybailov, B, Emmert-Streib, F & Glazko, G 2017, 'GSAR: Bioconductor package for Gene Set analysis in R', BMC Bioinformatics, Vuosikerta. 18, Nro 1, 61.

Kandavalli, VK, Tran, H & Ribeiro, AS 2016, 'Effects of σ factor competition are promoter initiation kinetics dependent', Biochimica et Biophysica Acta: Gene Regulatory Mechanisms, Vuosikerta. 1859, Nro 10, Sivut 1281-1288.

Koivuniemi, A & Vattulainen, I 2015, 'Biogenesis of Nascent High Density Lipoprotein Particles', Structure, Vuosikerta. 23, Nro 7, 3212, Sivut 1153-1154.

Matos Simoes, RD, Dalleau, S, Williamson, KE & Emmert-Streib, F 2015, 'Urothelial cancer gene regulatory networks inferred from large-scale RNAseq, Bead and Oligo gene expression data', BMC Systems Biology, Vuosikerta. 9, 21.

Moriya, T, Acar, E, Cheng, RH & Ruotsalainen, U 2015, 'A Bayesian approach for suppression of limited angular sampling artifacts in single particle 3D reconstruction', Journal of Structural Biology, Vuosikerta. 191, Nro 3, Sivut 318–331.

Rahmatallah, Y, Emmert-Streib, F & Glazko, G 2014, 'Comparative evaluation of gene set analysis approaches for RNA-Seq data', BMC Bioinformatics, Vuosikerta. 15, Nro 1, 397.

Kokkola, T, Suuronen, T, Molnár, F, Määttä, J, Salminen, A, Jarho, EM & Lahtela-Kakkonen, M 2014, 'AROS has a context-dependent effect on SIRT1', FEBS Letters, Vuosikerta. 588, Nro 9, Sivut 1523-1528.

Rangl, M, Leitner, M, Riihimäki, T, Lehtonen, S, Hytönen, VP, Gruber, HJ, Kulomaa, M, Hinterdorfer, P & Ebner, A 2014, 'Investigating the binding behaviour of two avidin-based testosterone binders using molecular recognition force spectroscopy', Journal of Molecular Recognition, Vuosikerta. 27, Nro 2, Sivut 92-97.

Emmert-Streib, F, de Matos Simoes, R, Glazko, G, McDade, S, Haibe-Kains, B, Holzinger, A, Dehmer, M & Campbell, F 2014, 'Functional and genetic analysis of the colon cancer network.', BMC Bioinformatics, Vuosikerta. 15, Nro Suppl 6, S6.

Anantharajan, J, Koski, MK, Kursula, P, Hieta, R, Bergmann, U, Myllyharju, J & Wierenga, RK 2013, 'The structural motifs for substrate binding and dimerization of the α subunit of collagen prolyl 4-hydroxylase', Structure, Vuosikerta. 21, Nro 12, Sivut 2107-2118.

Sharma, V & Misteli, T 2013, 'Non-coding RNAs in DNA damage and repair', FEBS Letters, Vuosikerta. 587, Nro 13, Sivut 1832-1839.

Tossavainen, H, Helppolainen, SH, Määttä, JAE, Pihlajamaa, T, Hytönen, VP, Kulomaa, MS & Permi, P 2013, 'Resonance assignments of the 56 kDa chimeric avidin in the biotin-bound and free forms', BIOMOLECULAR NMR ASSIGNMENTS, Vuosikerta. 7, Nro 1, Sivut 35-38.

Lisitsyna, ES, Durandin, NA, Ivanov, AA, Streltsov, SA, Susova, OY, Shtil, AA, Zhuze, AL & Kuzmin, VA 2012, 'Characteristics of complex formation between monomeric and dimeric bisbenzimidazoles and AT-containing polynucleotide', MOLECULAR BIOLOGY, Vuosikerta. 46, Nro 6, Sivut 823-827.

de Matos Simoes, R, Tripathi, S & Emmert-Streib, F 2012, 'Organizational structure and the periphery of the gene regulatory network in B-cell lymphoma.', BMC Systems Biology, Vuosikerta. 6, 38.

Mueller, LAJ, Kugler, KG, Graber, A, Emmert-Streib, F & Dehmer, M 2011, 'Structural Measures for Network Biology Using QuACN', BMC Bioinformatics, Vuosikerta. 12, Nro 1, 492.

Altay, G & Emmert-Streib, F 2010, 'Inferring the conservative causal core of gene regulatory networks', BMC Systems Biology, Vuosikerta. 4, 132.

Emmert-Streib, F & Dehmer, M 2009, 'Hierarchical coordination of periodic genes in the cell cycle of Saccharomyces cerevisiae', BMC Systems Biology, Vuosikerta. 3, 76.

Emmert-Streib, F & Dehmer, M 2009, 'Information processing in the transcriptional regulatory network of yeast: Functional robustness', BMC Systems Biology, Vuosikerta. 3, 35.

Dehmer, M & Emmert-Streib, F 2008, 'Structural information content of networks: Graph entropy based on local vertex functionals', Computational Biology and Chemistry, Vuosikerta. 32, Nro 2, Sivut 131-138.

Emmert-Streib, F & Mushegian, A 2007, 'A topological algorithm for identification of structural domains of proteins', BMC Bioinformatics, Vuosikerta. 8, 237.