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Tienaho, J., Poikulainen, E., Sarjala, T., Muilu-Mäkelä, R., Santala, V., & Karp, M. (2018). A Bioscreening Technique for Ultraviolet Irradiation Protective Natural Substances. Photochemistry and Photobiology, 94(6), 1273-1280. https://doi.org/10.1111/php.12954

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Ojansivu, M., Wang, X., Hyväri, L., Kellomäki, M., Hupa, L., Vanhatupa, S., & Miettinen, S. (2018). Bioactive glass induced osteogenic differentiation of human adipose stem cells is dependent on cell attachment mechanism and mitogen-activated protein kinases. European Cells and Materials, 35, 53-71. https://doi.org/10.22203/eCM.v035a05

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Khanongnuch, R., Di Capua, F., Lakaniemi, A-M., Rene, E. R., & Lens, P. N. L. (2018). Effect of N/S ratio on anoxic thiosulfate oxidation in a fluidized bed reactor: Experimental and artificial neural network model analysis. Process Biochemistry, 68, 171-181. https://doi.org/10.1016/j.procbio.2018.02.018

Rokade, S. S., Joshi, K. A., Mahajan, K., Patil, S., Tomar, G., Dubal, D. S., ... Ghosh, S. (2018). Gloriosa superba Mediated Synthesis of Platinum and Palladium Nanoparticles for Induction of Apoptosis in Breast Cancer. Bioinorganic Chemistry and Applications, 2018, [4924186]. https://doi.org/10.1155/2018/4924186

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Björk, S., Ojala, E. A., Nordström, T., Ahola, A., Liljeström, M., Hyttinen, J., ... Mervaala, E. (2017). Evaluation of optogenetic electrophysiology tools in human stem cell-derived cardiomyocytes. Frontiers in Physiology, 8(NOV), [884]. https://doi.org/10.3389/fphys.2017.00884

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Granberg, K. J., Annala, M., Lehtinen, B., Kesseli, J., Haapasalo, J., Ruusuvuori, P., ... Zhang, W. (2017). Strong FGFR3 staining is a marker for FGFR3 fusions in diffuse gliomas. Neuro-Oncology, 19(9), 1206-1216. https://doi.org/10.1093/neuonc/nox028

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Juchheim, J., Annighöfer, P., Ammer, C., Calders, K., Raumonen, P., & Seidel, D. (2017). How management intensity and neighborhood composition affect the structure of beech (Fagus sylvatica L.) trees. TREES-STRUCTURE AND FUNCTION, 31(5), 1723–1735. https://doi.org/10.1007/s00468-017-1581-z

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Mokkila, S., Postila, P. A., Rissanen, S., Juhola, H., Vattulainen, I., & Róg, T. (2017). Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles. ACS Chemical Neuroscience, 8(6), 1242-1250. https://doi.org/10.1021/acschemneuro.6b00395

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Kahraman, M., Ozbay, A., Yuksel, H., Solmaz, R., Demir, B., & Caglayan, H. (Hyväksytty/painossa). Tunable Plasmonic Silver Nanodomes for Surface-Enhanced Raman Scattering. Plasmonics, 1-11. https://doi.org/10.1007/s11468-017-0573-6

Higashino, T., Nakatsuji, H., Fukuda, R., Okamoto, H., Imai, H., Matsuda, T., ... Imahori, H. (2017). Hexaphyrin as a Potential Theranostic Dye for Photothermal Therapy and 19F Magnetic Resonance Imaging. ChemBioChem, 18(10), 951-959. https://doi.org/10.1002/cbic.201700071

Bilkova, E., Pleskot, R., Rissanen, S., Sun, S., Czogalla, A., Cwiklik, L., ... Coskun, Ü. (2017). Calcium Directly Regulates Phosphatidylinositol 4,5-Bisphosphate Headgroup Conformation and Recognition. Journal of the American Chemical Society, 139(11), 4019-4024. https://doi.org/10.1021/jacs.6b11760

Milani, R., Houbenov, N., Fernandez-Palacio, F., Cavallo, G., Luzio, A., Haataja, J., ... Ikkala, O. (2017). Hierarchical Self-Assembly of Halogen-Bonded Block Copolymer Complexes into Upright Cylindrical Domains. CheM, 2(3), 417-426. https://doi.org/10.1016/j.chempr.2017.02.003

Euro, L., Haapanen, O., Róg, T., Vattulainen, I., Suomalainen, A., & Sharma, V. (2017). Atomistic Molecular Dynamics Simulations of Mitochondrial DNA Polymerase γ: Novel Mechanisms of Function and Pathogenesis. Biochemistry, 56(9), 1227-1238. https://doi.org/10.1021/acs.biochem.6b00934

Lehtinen, T., Santala, V., & Santala, S. (2017). Twin-layer biosensor for real-time monitoring of alkane metabolism. FEMS Microbiology Letters, 364(6), [fnx053]. https://doi.org/10.1093/femsle/fnx053

Guixà-González, R., Albasanz, J. L., Rodriguez-Espigares, I., Pastor, M., Sanz, F., Martí-Solano, M., ... Selent, J. (2017). Membrane cholesterol access into a G-protein-coupled receptor. Nature Communications, 8, [14505]. https://doi.org/10.1038/ncomms14505

Izdebskaya, Y., Shvedov, V., Assanto, G., & Krolikowski, W. (2017). Magnetic routing of light-induced waveguides. Nature Communications, 8, [14452]. https://doi.org/10.1038/ncomms14452

Sislian, R., da Silva, F. V., Gedraite, R., Jokinen, H., & Rajan, D. K. (2017). The use of mathematical modeling for the development of a low cost fuzzy gain schedule neutralization control system. teoksessa Transactions on Engineering Technologies: World Congress on Engineering and Computer Science 2015 (Sivut 525-539). Springer Singapore. https://doi.org/10.1007/978-981-10-2717-8_37

Kuuliala, L., Abatih, E., Ioannidis, A. G., Vanderroost, M., De Meulenaer, B., Ragaert, P., & Devlieghere, F. (2017). Multivariate statistical analysis for the identification of potential seafood spoilage indicators. Food Control, 84, 49-60. https://doi.org/10.1016/j.foodcont.2017.07.018

Balanta, M. A. G., Orsi Gordo, V., Carvalho, A. R. H., Puustinen, J., Alghamdi, H. M., Henini, M., ... Galvão Gobato, Y. (2017). Polarization resolved photoluminescence in GaAs1−xBix/GaAs quantum wells. Journal of Luminescence, 182, 49-52. https://doi.org/10.1016/j.jlumin.2016.10.008

Rahmatallah, Y., Zybailov, B., Emmert-Streib, F., & Glazko, G. (2017). GSAR: Bioconductor package for Gene Set analysis in R. BMC Bioinformatics, 18(1), [61]. https://doi.org/10.1186/s12859-017-1482-6

Hyysalo, A., Ristola, M., Joki, T., Honkanen, M., Vippola, M., & Narkilahti, S. (2017). Aligned Poly(ε-caprolactone) Nanofibers Guide the Orientation and Migration of Human Pluripotent Stem Cell-Derived Neurons, Astrocytes, and Oligodendrocyte Precursor Cells In Vitro. MACROMOLECULAR BIOSCIENCE, 17(7), [1600517]. https://doi.org/10.1002/mabi.201600517

Grabon, A., Orłowski, A., Tripathi, A., Vuorio, J., Javanainen, M., Róg, T., ... Bankaitis, V. A. (2017). Dynamics and energetics of the mammalian phosphatidylinositol transfer protein phospholipid exchange cycle. Journal of Biological Chemistry, 292(35), 14438-14455. https://doi.org/10.1074/jbc.M117.791467

Khorramdel, B., Torkkeli, A., & Mäntysalo, M. (2017). Electrical Contacts in SOI MEMS Using Aerosol Jet Printing. IEEE Journal of the Electron Devices Society, 6, 34-40. https://doi.org/10.1109/JEDS.2017.2764498

Glazko, G., Rahmatallah, Y., Zybailov, B., & Emmert-Streib, F. (2017). Extracting the strongest signals from omics data: Differentially expressed pathways and beyond. teoksessa Methods in Molecular Biology (Sivut 125-159). (Methods in Molecular Biology; Vuosikerta 1613). HUMANA PRESS INC. https://doi.org/10.1007/978-1-4939-7027-8_7

Valkonen, M., Kartasalo, K., Liimatainen, K., Nykter, M., Latonen, L., & Ruusuvuori, P. (2017). Metastasis detection from whole slide images using local features and random forests. Cytometry Part A, 91(6), 555-565. https://doi.org/10.1002/cyto.a.23089

Wnętrzak, A., Makyła-Juzak, K., Filiczkowska, A., Kulig, W., & Dynarowicz-Łątka, P. (2017). Oxysterols Versus Cholesterol in Model Neuronal Membrane. I. The Case of 7-Ketocholesterol. The Langmuir Monolayer Study. Journal of Membrane Biology, 250(5), 553–564. https://doi.org/10.1007/s00232-017-9984-8

Lahbib, I., Valkonen, A., Rzaigui, M., & Smirani, W. (2017). Synthesis, Structural Characterization, Hirshfeld Surface and Antioxidant Activity Analysis of a Novel Organic Cation Antimonate Complex. Journal of Cluster Science, 28(4), 2239–2252. https://doi.org/10.1007/s10876-017-1217-x

Wu, X., Bhattarai, A., Korkola, P., Pertovaara, H., Eskola, H., & Kellokumpu-Lehtinen, P. L. (2017). The Association Between Liver and Tumor [18F]FDG Uptake in Patients with Diffuse Large B Cell Lymphoma During Chemotherapy. Molecular Imaging and Biology, 19(5), 787–794. https://doi.org/10.1007/s11307-017-1044-3

Kalli, A. C., Rog, T., Vattulainen, I., Campbell, I. D., & Sansom, M. S. P. (2017). The Integrin Receptor in Biologically Relevant Bilayers: Insights from Molecular Dynamics Simulations. Journal of Membrane Biology, 250, 337-351. https://doi.org/10.1007/s00232-016-9908-z

Kandavalli, V., Startceva, S., & Sanches Ribeiro, A. (2017). Transcription Initiation Controls Skewness of the Distribution of Intervals Between RNA Productions. teoksessa G. Paulo J.S (Toimittaja), 31st European Simulation and Modelling Conference: ESM'2017 (Sivut 397-403). Portugal: EUROSIS.

Halonen, H., Kyllönen, L., Ihalainen, T. O., Miettinen, S., & Hyttinen, J. (2016). Abstract: Direction as a vibration loading parameter in bone tissue engineering. Julkaisun esittämispaikka: BioMediTech Research Day 2016, Tampere, Suomi.

Stupnikov, A., Tripathi, S., De Matos Simoes, R., McArt, D., Salto-Tellez, M., Glazko, G., ... Emmert-Streib, F. (2016). SamExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files. Bioinformatics, 32(21), 3345-3347. https://doi.org/10.1093/bioinformatics/btw475

Will, O. M., Purcz, N., Chalaris, A., Heneweer, C., Boretius, S., Purcz, L., ... Tiwari, S. (2016). Increased survival rate by local release of diclofenac in a murine model of recurrent oral carcinoma. International Journal of Nanomedicine, 11, 5311-5321. https://doi.org/10.2147/IJN.S109199

Kandavalli, V. K., Tran, H., & Ribeiro, A. S. (2016). Effects of σ factor competition are promoter initiation kinetics dependent. Biochimica et Biophysica Acta: Gene Regulatory Mechanisms, 1859(10), 1281-1288. https://doi.org/10.1016/j.bbagrm.2016.07.011

Kuleta, P., Sarewicz, M., Postila, P., Róg, T., & Osyczka, A. (2016). Identifying involvement of Lys251/Asp252 pair in electron transfer and associated proton transfer at the quinone reduction site of Rhodobacter capsulatus cytochrome bc1. Biochimica et Biophysica Acta: Bioenergetics, 1857(10), 1661-1668. https://doi.org/10.1016/j.bbabio.2016.07.003

Vattulainen, I., & Róg, T. (2016). Lipid membranes: Theory and simulations bridged to experiments. Biochimica et Biophysica Acta: Biomembranes, 1858(10), 2251-2253. https://doi.org/10.1016/j.bbamem.2016.06.007

Javanainen, M., & Martinez-Seara, H. (2016). Efficient preparation and analysis of membrane and membrane protein systems. Biochimica et Biophysica Acta: Biomembranes, 1858(10), 2468-2482. https://doi.org/10.1016/j.bbamem.2016.02.036

Kepczynski, M., & Róg, T. (2016). Functionalized lipids and surfactants for specific applications. Biochimica et Biophysica Acta: Biomembranes, 1858(10), 2362-2379. https://doi.org/10.1016/j.bbamem.2016.02.038

Zhou, Q., Sariola, V., Latifi, K., & Liimatainen, V. (2016). Controlling the motion of multiple objects on a Chladni plate. Nature Communications, 7, [12764]. https://doi.org/10.1038/ncomms12764

Korpinen, L., Kuisti, H., & Elovaara, J. (2016). Current densities and total contact currents during forest clearing tasks under 400kV power lines. Bioelectromagnetics, 37(6), 423-428. https://doi.org/10.1002/bem.21980

Kaurola, P., Sharma, V., Vonk, A., Vattulainen, I., & Róg, T. (2016). Distribution and dynamics of quinones in the lipid bilayer mimicking the inner membrane of mitochondria. Biochimica et Biophysica Acta: Biomembranes, 1858(9), 2116-2122. https://doi.org/10.1016/j.bbamem.2016.06.016

Tan, L. C., Nancharaiah, Y. V., van Hullebusch, E. D., & Lens, P. N. L. (2016). Selenium: environmental significance, pollution, and biological treatment technologies. Biotechnology Advances, 34(5), 886-907. https://doi.org/10.1016/j.biotechadv.2016.05.005

Emmert-Streib, F., Dehmer, M., & Yli-Harja, O. (2016). Against dataism and for data sharing of big biomedical and clinical data with research parasites. Frontiers in Genetics, 7(AUG), [154]. https://doi.org/10.3389/fgene.2016.00154

Sharma, V., & Wikström, M. (2016). The role of the K-channel and the active-site tyrosine in the catalytic mechanism of cytochrome c oxidase. Biochimica et Biophysica Acta: Bioenergetics, 1857(8), 1111-1115. https://doi.org/10.1016/j.bbabio.2016.02.008

Halonen, H., Kyllönen, L., Ihalainen, T. O., Miettinen, S., & Hyttinen, J. (2016). Abstract: Direction as a vibration loading parameter in osteogenic differentiation of adipose stem cells. Julkaisun esittämispaikka: Congress of the European Society of biomechanics ESB2016, Lyon, Ranska.

Santala, V., Karp, M., & Santala, S. (2016). Bioluminescence-based system for rapid detection of natural transformation. FEMS Microbiology Letters, 363(13), [fnw125]. https://doi.org/10.1093/femsle/fnw125

Roszak, J., Catalán, J., Järventaus, H., Lindberg, H. K., Suhonen, S., Vippola, M., ... Norppa, H. (2016). Effect of particle size and dispersion status on cytotoxicity and genotoxicity of zinc oxide in human bronchial epithelial cells. Mutation Research: Genetic Toxicology and Environmental Mutagenesis, 805, 7-18. https://doi.org/10.1016/j.mrgentox.2016.05.008

Lajunen, T., Kontturi, L-S., Viitala, L., Manna, M., Cramariuc, O., Róg, T., ... Urtti, A. (2016). Indocyanine Green-Loaded Liposomes for Light-Triggered Drug Release. Molecular Pharmaceutics, 13(6), 2095-2107. https://doi.org/10.1021/acs.molpharmaceut.6b00207

Razavi, A., Valkama, M., & Lohan, E. S. (2016). Robust statistical approaches for RSS-based floor detection in indoor localization. Sensors, 16(6), [793]. https://doi.org/10.3390/s16060793

Häkkinen, A., & Ribeiro, A. S. (2016). Characterizing rate limiting steps in transcription from RNA production times in live cells. Bioinformatics, 32(9), 1346-1352. https://doi.org/10.1093/bioinformatics/btv744

Emmert-Streib, F., Tuomisto, L., & Yli-Harja, O. (2016). The need for formally defining "modern medicine" by means of experimental design. Frontiers in Genetics, 7(APR), [60]. https://doi.org/10.3389/fgene.2016.00060

Vuornos, K., Björninen, M., Talvitie, E., Paakinaho, K., Kellomäki, M., Huhtala, H., ... Haimi, S. (2016). Human Adipose Stem Cells Differentiated on Braided Polylactide Scaffolds is a Potential Approach for Tendon Tissue Engineering. Tissue Engineering Part A, 22(5-6), 513-523. https://doi.org/10.1089/ten.tea.2015.0276

Nanni, L., Paci, M., Dos Santos, F. L. C., Skottman, H., Juuti-Uusitalo, K., & Hyttinen, J. (2016). Texture descriptors ensembles enable image-based classification of maturation of human stem cell-derived retinal pigmented epithelium. PLoS ONE, 11(2), [e0149399]. https://doi.org/10.1371/journal.pone.0149399

Järvinen, P., Nybond, S., Marcourt, L., Ferreira Queiroz, E., Wolfender, J. L., Mettälä, A., ... Tammela, P. (2016). Cell-based bioreporter assay coupled to HPLC micro-fractionation in the evaluation of antimicrobial properties of the basidiomycete fungus Pycnoporus cinnabarinus. Pharmaceutical Biology, 54(6), 1-8. https://doi.org/10.3109/13880209.2015.1103754

Nancharaiah, Y. V., Mohan, S. V., & Lens, P. N. L. (2016). Biological and Bioelectrochemical Recovery of Critical and Scarce Metals. Trends in Biotechnology, 34(2), 137-155. https://doi.org/10.1016/j.tibtech.2015.11.003

Kulig, W., Cwiklik, L., Jurkiewicz, P., Rog, T., & Vattulainen, I. (2016). Cholesterol oxidation products and their biological importance. Chemistry and Physics of Lipids, 199, 144-160. https://doi.org/10.1016/j.chemphyslip.2016.03.001

Lahti, J., Lavonen, J., Lahtinen, K., Johansson, P., Seppänen, T., & Cameron, D. C. (2016). Improved properties for packaging materials by nanoscale surface modification and ALD barrier coating. teoksessa TAPPI International Conference on Nanotechnology for Renewable Materials 2016 (Vuosikerta 2, Sivut 684-706). TAPPI Press.

Teppola, H., Sarkanen, J. R., Jalonen, T. O., & Linne, M-L. (2016). Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol. Neurochemical Research, 41(4), 731-747. https://doi.org/10.1007/s11064-015-1743-6

Metzler, R., Jeon, J. H., & Cherstvy, A. G. (2016). Non-Brownian diffusion in lipid membranes: Experiments and simulations. Biochimica et Biophysica Acta: Biomembranes, 215, 173–185. https://doi.org/10.1016/j.bbamem.2016.01.022

Neeli-Venkata, R., Martikainen, A., Gupta, A., Goncalves, N., Fonseca, J., & Ribeiro, A. S. (2016). Robustness of the process of nucleoid exclusion of protein aggregates in Escherichia coli. Journal of Bacteriology, 198(6), 898-906. https://doi.org/10.1128/JB.00848-15

Pöyry, S., & Vattulainen, I. (2016). Role of charged lipids in membrane structures: Insight given by simulations. Biochimica et Biophysica Acta: Biomembranes, 2322–2333. https://doi.org/10.1016/j.bbamem.2016.03.016

Saarinen, J. J., Valtakari, D., Bollström, R., Stepien, M., Haapanen, J., Mäkelä, J. M., & Toivakka, M. (2016). Roll-to-roll application of photocatalytic TiO2 nanoparticles for printed functionality. teoksessa Advanced Manufacturing, Electronics and Microsystems: TechConnect Briefs 2016 (Vuosikerta 4, Sivut 47-50). TechConnect.

Rog, T., & Koivuniemi, A. (2016). The biophysical properties of ethanolamine plasmalogens revealed by atomistic molecular dynamics simulations. Biochimica et Biophysica Acta: Biomembranes, 1858(1), 97-103. https://doi.org/10.1016/j.bbamem.2015.10.023

Kuusela, J., Kim, J., Räsänen, E., & Aalto-Setälä, K. (2016). The Effects of Pharmacological Compounds on Beat Rate Variations in Human Long QT-Syndrome Cardiomyocytes. Stem Cell Reviews and Reports, 12(6), 698–707. https://doi.org/10.1007/s12015-016-9686-0

Ruddock, M. W., De Matos Simoes, R., O'Rourke, D., Duggan, B., Stevenson, M., O'Kane, H. F., ... Williamson, K. E. (2016). Urinary thrombomodulin levels were significantly higher following occupational exposure to chemicals, in the presence of dipstick protein, but not in the presence of dipstick blood. Biology and Medicine, 8(1), [1000260]. https://doi.org/10.4172/0974-8369.1000260

Linnanmäki, L., Göransson, H., Havulinna, J., Sippola, P., Karjalainen, T., & Leppänen, O. V. (2016). Validity of parameters in static linear testing of flexor tendon repair. Journal of Biomechanics, 49(13), 2785–2790. https://doi.org/10.1016/j.jbiomech.2016.06.022

Manzini, S., Viiri, L. E., Marttila, S., & Aalto-Setälä, K. (2015). A Comparative View on Easy to Deploy non-Integrating Methods for Patient-Specific iPSC Production. Stem Cell Reviews and Reports, 11(6), 900-908. https://doi.org/10.1007/s12015-015-9619-3

Cervinka, T., Sievänen, H., Lala, D., Cheung, A. M., Giangregorio, L., & Hyttinen, J. (2015). A new algorithm to improve assessment of cortical bone geometry in pQCT. Bone, 81, 721-730. https://doi.org/10.1016/j.bone.2015.09.015

Vanhatupa, S., Ojansivu, M., Autio, R., Juntunen, M., & Miettinen, S. (2015). Bone morphogenetic protein-2 induces donor-dependent osteogenic and adipogenic differentiation in human adipose stem cells. Stem Cells Translational Medicine, 4(12), 1391-1402. https://doi.org/10.5966/sctm.2015-0042

Friis, S., Kesminiene, A., Espina, C., Auvinen, A., Straif, K., & Schüz, J. (2015). European Code against Cancer 4th Edition: Medical exposures, including hormone therapy, and cancer. CANCER EPIDEMIOLOGY, 39, S107-S119. https://doi.org/10.1016/j.canep.2015.08.003

McColl, N., Auvinen, A., Kesminiene, A., Espina, C., Erdmann, F., de Vries, E., ... Schüz, J. (2015). European Code against Cancer 4th Edition: Ionising and non-ionising radiation and cancer. CANCER EPIDEMIOLOGY, 39, S93-S100. https://doi.org/10.1016/j.canep.2015.03.016

Greinert, R., de Vries, E., Erdmann, F., Espina, C., Auvinen, A., Kesminiene, A., & Schüz, J. (2015). European Code against Cancer 4th Edition: Ultraviolet radiation and cancer. CANCER EPIDEMIOLOGY, 39, S75-S83. https://doi.org/10.1016/j.canep.2014.12.014

Jia, L., Sun, Z., Wu, X., Misteli, T., & Sharma, V. (2015). Gene expression analysis upon lncRNA DDSR1 knockdown in human fibroblasts. Genomics Data, 6, 277-279. https://doi.org/10.1016/j.gdata.2015.10.017

Liao, T. Y. A., Lau, A., Joseph, S., Hytönen, V., & Hmama, Z. (2015). Improving the Immunogenicity of the Mycobacterium bovis BCG Vaccine by Non-Genetic Bacterial Surface Decoration Using the Avidin-Biotin System. PLoS ONE, 10(12), [e0145833]. https://doi.org/10.1371/journal.pone.0145833

Kannisto, M. S., Mangayil, R. K., Shrivastava-Bhattacharya, A., Pletschke, B. I., Karp, M. T., & Santala, V. P. (2015). Metabolic engineering of Acinetobacter baylyi ADP1 for removal of Clostridium butyricum growth inhibitors produced from lignocellulosic hydrolysates. Biotechnology for Biofuels, 8(1), [198]. https://doi.org/10.1186/s13068-015-0389-6

Ravi, A., Luthra, A., Teixeira, F. L., Berger, P. R., & Coe, J. V. (2015). Tuning the Plasmonic Extinction Resonances of Hexagonal Arrays of Ag Nanoparticles. Plasmonics, 10(6), 1505-1512. https://doi.org/10.1007/s11468-015-9963-9

Marjakangas, J. M., Chen, C. Y., Lakaniemi, A. M., Puhakka, J. A., Whang, L. M., & Chang, J. S. (2015). Simultaneous nutrient removal and lipid production with Chlorella vulgaris on sterilized and non-sterilized anaerobically pretreated piggery wastewater. Biochemical Engineering Journal, 103, 177-184. https://doi.org/10.1016/j.bej.2015.07.011

Abeshouse, A., Ahn, J., Akbani, R., Ally, A., Amin, S., Andry, C. D., ... Zmuda, E. (2015). The Molecular Taxonomy of Primary Prostate Cancer. Cell, 163(4), 1011-1025. https://doi.org/10.1016/j.cell.2015.10.025

Sharma, V., Khurana, S., Kubben, N., Abdelmohsen, K., Oberdoerffer, P., Gorospe, M., & Misteli, T. (2015). A BRCA1-interacting lncRNA regulates homologous recombination. EMBO REPORTS, 16(11), 1520-1534. https://doi.org/10.15252/embr.201540437

Zorzi, G. K., Párraga, J. E., Seijo, B., & Sanchez, A. (2015). Comparison of different cationized proteins as biomaterials for nanoparticle-based ocular gene delivery. Colloids and Surfaces B: Biointerfaces, 135, 533-541. https://doi.org/10.1016/j.colsurfb.2015.08.008

Vapaavuori, J., Laventure, A., Bazuin, C. G., Lebel, O., & Pellerin, C. (2015). Submolecular Plasticization Induced by Photons in Azobenzene Materials. Journal of the American Chemical Society, 137(42), 13510-13517. https://doi.org/10.1021/jacs.5b06611

Ryödi, E., Metso, S., Jaatinen, P., Huhtala, H., Saaristo, R., Välimäki, M., & Auvinen, A. (2015). Cancer incidence and mortality in patients treated either with RAI or thyroidectomy for hyperthyroidism. Journal of Clinical Endocrinology and Metabolism, 100(10), 3710-3717. https://doi.org/10.1210/jc.2015-1874

Hietanen, T., Pitkänen, M., Kapanen, M., & Kellokumpu-Lehtinen, P. L. (2015). Effects of single and fractionated irradiation on natural killer cell populations: Radiobiological characteristics of viability and cytotoxicity in vitro. Anticancer Research, 35(10), 5193-5200.

Tamminen, P., Viheriäkoski, T., Sydänheimo, L., & Ukkonen, L. (2015). ESD qualification data used as the basis for building electrostatic discharge protected areas. Journal of Electrostatics, 77, 174-181. [3024]. https://doi.org/10.1016/j.elstat.2015.08.009

Al Olama, A. A., Dadaev, T., Hazelett, D. J., Li, Q., Leongamornlert, D., Saunders, E. J., ... Kote-Jarai, Z. (2015). Multiple novel prostate cancer susceptibility signals identified by fine-mapping of known risk loci among Europeans. HUMAN MOLECULAR GENETICS, 24(19), 5589-5602. [ddv203]. https://doi.org/10.1093/hmg/ddv203

Ylipää, A., Kivinummi, K., Kohvakka, A., Annala, M., Latonen, L., Scaravilli, M., ... Nykter, M. (2015). Transcriptome sequencing reveals PCAT5 as a Novel ERG-Regulated long Noncoding RNA in prostate cancer. Cancer Research, 75(19), 4026-4031. https://doi.org/10.1158/0008-5472.CAN-15-0217

Moradi, M., Enkavi, G., & Tajkhorshid, E. (2015). Atomic-level characterization of transport cycle thermodynamics in the glycerol-3-phosphate: Phosphate antiporter. Nature Communications, 6, [8393]. https://doi.org/10.1038/ncomms9393

Pashayan, N., Pharoah, P. D. P., Schleutker, J., Talala, K., Tammela, T. L. J., Määttänen, L., ... Auvinen, A. (2015). Reducing overdiagnosis by polygenic risk-stratified screening: Findings from the Finnish section of the ERSPC. British Journal of Cancer, 113(7), 1086-1093. https://doi.org/10.1038/bjc.2015.289

Umbehr, M. H., Gurel, B., Murtola, T. J., Sutcliffe, S., Peskoe, S. B., Tangen, C. M., ... Platz, E. A. (2015). Intraprostatic inflammation is positively associated with serum PSA in men with PSA <4 ngml-1, normal DRE and negative for prostate cancer. PROSTATE CANCER AND PROSTATIC DISEASES, 18(3), 264-269. https://doi.org/10.1038/pcan.2015.19

Kokko, M. E., Mäkinen, A. E., Sulonen, M. L. K., & Puhakka, J. A. (2015). Effects of anode potentials on bioelectrogenic conversion of xylose and microbial community compositions. Biochemical Engineering Journal, 101, 248-252. https://doi.org/10.1016/j.bej.2015.06.007

Vicentini, C., Tylcz, J. B., Betrouni, N., Mortier, L., & Mordon, S. (2015). Is Daylight-PDT a good treatment option during solar eclipse? PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, 12(3), 376-377. https://doi.org/10.1016/j.pdpdt.2015.04.002

Kaapu, K. J., Ahti, J., Tammela, T. L. J., Auvinen, A., & Murtola, T. J. (2015). Sotalol, but not digoxin is associated with decreased prostate cancer risk: A population-based case-control study. International Journal of Cancer, 137(5), 1187-1195. https://doi.org/10.1002/ijc.29470

Sorkio, A., Porter, P. J., Juuti-Uusitalo, K., Meenan, B. J., Skottman, H., & Burke, G. A. (2015). Surface Modified Biodegradable Electrospun Membranes as a Carrier for Human Embryonic Stem Cell-Derived Retinal Pigment Epithelial Cells. Tissue Engineering Part A, 21(17-18), 2301-2314. https://doi.org/10.1089/ten.tea.2014.0640

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Sorkio, A., Hongisto, H., Kaarniranta, K., Uusitalo, H., Juuti-Uusitalo, K., & Skottman, H. (2014). Structure and barrier properties of human embryonic stem cell-derived retinal pigment epithelial cells are affected by extracellular matrix protein coating. Tissue Engineering Part A, 20(3-4), 622-634. https://doi.org/10.1089/ten.tea.2013.0049

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Ji, J., Sharma, V., Qi, S., Guarch, M. E., Zhao, P., Luo, Z., ... Batada, N. N. (2014). Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells. Stem Cell Reports, 2(1), 44-51. https://doi.org/10.1016/j.stemcr.2013.11.004

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Maria Cherian, R., Gaunitz, S., Nilsson, A., Liu, J., Karlsson, N. G., & Holgersson, J. (2014). Shiga-like toxin binds with high avidity to multivalent O-linked blood group P1 determinants on mucin-type fusion proteins. GLYCOBIOLOGY, 24(1), 26-38. https://doi.org/10.1093/glycob/cwt086

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Křížek, T., Kubíčková, A., Hladílková, J., Coufal, P., Heyda, J., & Jungwirth, P. (2014). Electrophoretic mobilities of neutral analytes and electroosmotic flow markers in aqueous solutions of Hofmeister salts. ELECTROPHORESIS, 35(5), 617-624. https://doi.org/10.1002/elps.201300544

Emmert-Streib, F. (2014). Enhancing our understanding of ways to analyze metagenomes. Frontiers in Genetics, 5(APR), [Article 108]. https://doi.org/10.3389/fgene.2014.00108

Kannan, K., Vijayan, D., MubarakAli, D., Praveenkumar, R., Ahamed, A. P., & Thajuddin, N. (2014). Evidence-based analysis of a novel symbiotic and epiphytic cyanobacteria associated with Azolla by cyto and molecular taxonomy. Biotechnology, 13(2), 46-53. https://doi.org/10.3923/biotech.2014.46.53

Emmert-Streib, F., de Matos Simoes, R., Glazko, G., McDade, S., Haibe-Kains, B., Holzinger, A., ... Campbell, F. (2014). Functional and genetic analysis of the colon cancer network. BMC Bioinformatics, 15(Suppl 6), [S6].

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Olsen, C., Fleming, K., Prendergast, N., Rubio, R., Emmert-Streib, F., Bontempi, G., ... Quackenbush, J. (2014). Inference and validation of predictive gene networks from biomedical literature and gene expression data. Genomics, 103(5-6), 329-336. https://doi.org/10.1016/j.ygeno.2014.03.004

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Kannisto, M., Aho, T., Karp, M., & Santala, V. (2014). Metabolic engineering of Acinetobacter baylyi ADP1 for improved growth on gluconate and glucose. Applied and Environmental Microbiology, 80(22), 7021-7027. https://doi.org/10.1128/AEM.01837-14

Guglielmetti, S., Zanoni, I., Balzaretti, S., Miriani, M., Taverniti, V., de Noni, I., ... Granucci, F. (2014). Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain. Applied and Environmental Microbiology, 80(17), 5170-5177. https://doi.org/10.1128/AEM.00761-14

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Veitonmäki, T., Murtola, T. J., Määttänen, L., Taari, K., Stenman, U. H., Tammela, T. L., & Auvinen, A. (2014). Prostate cancer risk and nonsteroidal antiinflammatory drug use in the Finnish prostate cancer screening trial. British Journal of Cancer, 111(7), 1421-1431. https://doi.org/10.1038/bjc.2014.381

Hakala, T., Sand, J., Kellokumpu-Lehtinen, P. L., Huhtala, H., Leinonen, R., & Kholová, I. (2014). Recurrent thyroid cancers have more peritumoural lymphatic vasculature than nonrecurrent thyroid cancers. European Journal of Clinical Investigation, 44(9), 825-832. https://doi.org/10.1111/eci.12301

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Emmert-Streib, F., Zhang, S. D., & Hamilton, P. (2014). Report from the 2nd Summer School in Computational Biology organized by the Queen's University of Belfast. Genomics Data, 2, 37-39. https://doi.org/10.1016/j.gdata.2013.12.001

Pinon, P., Pärssinen, J., Vazquez, P., Bachmann, M., Rahikainen, R., Jacquier, M. C., ... Wehrle-Haller, B. (2014). Talin-bound NPLY motif recruits integrin-signaling adapters to regulate cell spreading and mechanosensing. Journal of Cell Biology, 205(2), 265-281. https://doi.org/10.1083/jcb.201308136

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Emmert-Streib, F., Simoes, R. D. M., Mullan, P., Haibe-Kains, B., & Dehmer, M. (2014). The gene regulatory network for breast cancer: Integrated regulatory landscape of cancer hallmarks. Frontiers in Genetics, 5(FEB), [Article 15]. https://doi.org/10.3389/fgene.2014.00015

Emmert-Streib, F., Dehmer, M., & Haibe-Kains, B. (2014). Untangling statistical and biological models to understand network inference: The need for a genomics network ontology. Frontiers in Genetics, 5(AUG), [article 229]. https://doi.org/10.3389/fgene.2014.00299

Dehmer, M., Emmert-Streib, F., & Tripathi, S. (2013). Large-scale evaluation of molecular descriptors by means of clustering. PLoS ONE, 8(12), [e83956]. https://doi.org/10.1371/journal.pone.0083956

Häkkinen, M. R., Roine, A., Auriola, S., Tuokko, A., Veskimäe, E., Keinänen, T. A., ... Vepsäläinen, J. (2013). Analysis of free, mono- and diacetylated polyamines from human urine by LC-MS/MS. JOURNAL OF CHROMATOGRAPHY B: ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 941, 81-89. https://doi.org/10.1016/j.jchromb.2013.10.009

Altay, G., Kurt, Z., Dehmer, M., & Emmert-Streib, F. (2013). Netmes: Assessing gene network inference algorithms by network-based measures. Evolutionary Bioinformatics, 10. https://doi.org/10.4137/EBO.S13481

Anantharajan, J., Koski, M. K., Kursula, P., Hieta, R., Bergmann, U., Myllyharju, J., & Wierenga, R. K. (2013). The structural motifs for substrate binding and dimerization of the α subunit of collagen prolyl 4-hydroxylase. Structure, 21(12), 2107-2118. https://doi.org/10.1016/j.str.2013.09.005

Oksala, N., Pärssinen, J., Seppälä, I., Raitoharju, E., Ivana, K., Hernesniemi, J., ... Lehtimäki, T. (2013). Association of neuroimmune guidance cue netrin-1 and its chemorepulsive receptor UNC5B with atherosclerotic plaque expression signatures and stability in human(s) Tampere Vascular Study (TVS). Circulation: Cardiovascular Genetics, 6(6), 579-587. https://doi.org/10.1161/CIRCGENETICS.113.000141

Raitoharju, E., Oksala, N., & Lehtimäki, T. (2013). MicroRNAs in the atherosclerotic plaque. Clinical Chemistry, 59(12), 1708-1721. https://doi.org/10.1373/clinchem.2013.204917

Laurila, E. M., & Kallioniemi, A. (2013). The diverse role of miR-31 in regulating cancer associated phenotypes. Genes Chromosomes and Cancer, 52(12), 1103-1113. https://doi.org/10.1002/gcc.22107

Poojari, C., Xiao, D., Batista, V. S., & Strodel, B. (2013). Membrane permeation induced by aggregates of human islet amyloid polypeptides. Biophysical Journal, 105(10), 2323-2332. https://doi.org/10.1016/j.bpj.2013.09.045

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Poojari, C., & Strodel, B. (2013). Stability of transmembrane amyloid β-peptide and membrane integrity tested by molecular modeling of site-specific Aβ42 mutations. PLoS ONE, 8(11), [e78399]. https://doi.org/10.1371/journal.pone.0078399

Kellokumpu-Lehtinen, P. L., Tuunanen, T., Kautio, A. L., Lehtinen, I., & Tanner, M. (2013). Bi-weekly paclitaxel and capecitabine as a second- Or third-line treatment for advanced breast cancer: A pilot study. Anticancer Research, 33(11), 4941-4945.

Taskinen, B., Zmurko, J., Ojanen, M., Kukkurainen, S., Parthiban, M., Määttä, J. A. E., ... Hytönen, V. P. (2013). Zebavidin - An Avidin-Like Protein from Zebrafish. PLoS ONE, 8(10), [e77207]. https://doi.org/10.1371/journal.pone.0077207

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Kyllönen, L., Haimi, S., Säkkinen, J., Kuokkanen, H., Mannerström, B., Sándor, G. K. B., & Miettinen, S. (2013). Exogenously added BMP-6, BMP-7 and VEGF may not enhance the osteogenic differentiation of human adipose stem cells. GROWTH FACTORS, 31(5), 141-153. https://doi.org/10.3109/08977194.2013.817404

Kurttio, P., Seppä, K., Pasanen, K., Patama, T., Auvinen, A., Pukkala, E., ... Hakulinen, T. (2013). Fallout from the Chernobyl accident and overall cancer incidence in Finland. CANCER EPIDEMIOLOGY, 37(5), 585-592. https://doi.org/10.1016/j.canep.2013.05.006

Nurminen, R., Lehtonen, R., Auvinen, A., Tammela, T. L. J., Wahlfors, T., & Schleutker, J. (2013). Fine mapping of 11q13.5 identifies regions associated with prostate cancer and prostate cancer death. EUROPEAN JOURNAL OF CANCER, 49(15), 3335-3343. https://doi.org/10.1016/j.ejca.2013.06.006

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Ampuja, M., Jokimäki, R., Juuti-Uusitalo, K., Rodriguez-Martinez, A., Alarmo, E. L., & Kallioniemi, A. (2013). BMP4 inhibits the proliferation of breast cancer cells and induces an MMP-dependent migratory phenotype in MDA-MB-231 cells in 3D environment. BMC Cancer, 13, [429]. https://doi.org/10.1186/1471-2407-13-429

Lindström, M. S., & Latonen, L. (2013). The nucleolus as a stress response organelle. teoksessa Proteins of the Nucleolus: Regulation, Translocation, & Biomedical Functions (Vuosikerta 9789400758186, Sivut 251-273). Springer Netherlands. https://doi.org/10.1007/978-94-007-5818-6_11

Högnäs, G., Hämälistö, S., Rilla, K., Laine, J. O., Vilkki, V., Murumägi, A., ... Ivaska, J. (2013). Aneuploidy facilitates oncogenic transformation via specific genetic alterations, including Twist2 upregulation. Carcinogenesis, 34(9), 2000-2009. https://doi.org/10.1093/carcin/bgt171

Bozzini, G., Colin, P., Betrouni, N., Maurage, C. A., Leroy, X., Simonin, S., ... Mordon, S. (2013). Efficiency of 5-ALA mediated photodynamic therapy on hypoxic prostate cancer: A preclinical study on the dunning R3327-AT2 rat tumor model. PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, 10(3), 296-303. https://doi.org/10.1016/j.pdpdt.2013.01.003

Rahu, K., Hakulinen, T., Smailyte, G., Stengrevics, A., Auvinen, A., Inskip, P. D., ... Rahu, M. (2013). Site-specific cancer risk in the Baltic cohort of Chernobyl cleanup workers, 1986-2007. EUROPEAN JOURNAL OF CANCER, 49(13), 2926-2933. https://doi.org/10.1016/j.ejca.2013.04.014

Nickerson, M. L., Im, K. M., Misner, K. J., Tan, W., Lou, H., Gold, B., ... Bova, G. S. (2013). Somatic alterations contributing to metastasis of a castration-resistant prostate cancer. HUMAN MUTATION, 34(9), 1231-1241. https://doi.org/10.1002/humu.22346

Dixit, D., Ghildiyal, R., Anto, N. P., Ghosh, S., Sharma, V., & Sen, E. (2013). Guggulsterone sensitizes glioblastoma cells to Sonic hedgehog inhibitor SANT-1 induced apoptosis in a Ras/NFκB dependent manner. Cancer Letters, 336(2), 347-358. https://doi.org/10.1016/j.canlet.2013.03.025

Stirnemann, G., Wernersson, E., Jungwirth, P., & Laage, D. (2013). Mechanisms of acceleration and retardation of water dynamics by ions. Journal of the American Chemical Society, 135(32), 11824-11831. https://doi.org/10.1021/ja405201s

Chen, J., Xi, J., Tian, Y., Bova, G. S., & Zhang, H. (2013). Identification, prioritization, and evaluation of glycoproteins for aggressive prostate cancer using quantitative glycoproteomics and antibody-based assays on tissue specimens. Proteomics, 13(15), 2268-2277. https://doi.org/10.1002/pmic.201200541

Venojärvi, M., Oksala, N., Kinnunen, S., & Atalay, M. (2013). Stress Proteins and Heat Shock Proteins: Role in Muscle Building and Sports Nutrition. teoksessa Nutrition and Enhanced Sports Performance: Muscle Building, Endurance, and Strength (Sivut 229-235). Elsevier Inc.. https://doi.org/10.1016/B978-0-12-396454-0.00023-0

Loi, S., Michiels, S., Lambrechts, D., Fumagalli, D., Claes, B., Kellokumpu-Lehtinen, P. L., ... Sotiriou, C. (2013). Somatic mutation profiling and associations with prognosis and trastuzumab benefit in early breast cancer. JOURNAL OF THE NATIONAL CANCER INSTITUTE, 105(13), 960-967. https://doi.org/10.1093/jnci/djt121

Diban, N., Haimi, S., Bolhuis-Versteeg, L., Teixeira, S., Miettinen, S., Poot, A., ... Stamatialis, D. (2013). Development and characterization of poly(ε-caprolactone) hollow fiber membranes for vascular tissue engineering. Journal of Membrane Science, 438, 29-37. https://doi.org/10.1016/j.memsci.2013.03.024

Liu, W., Xie, C. C., Thomas, C. Y., Kim, S. T., Lindberg, J., Egevad, L., ... Xu, J. (2013). Genetic markers associated with early cancer-specific mortality following prostatectomy. Cancer, 119(13), 2405-2412. https://doi.org/10.1002/cncr.27954

Kosola, J., Vaara, J. P., Ahotupa, M., Kyröläinen, H., Santtila, M., Oksala, N., ... Vasankari, T. (2013). Elevated concentration of oxidized LDL together with poor cardiorespiratory and abdominal muscle fitness predicts metabolic syndrome in young men. METABOLISM: CLINICAL AND EXPERIMENTAL, 62(7), 992-999. https://doi.org/10.1016/j.metabol.2013.01.013

Leppiniemi, J., Meir, A., Kahkonen, N., Kukkurainen, S., Maatta, J. A., Ojanen, M., ... Hytonen, V. P. (2013). The highly dynamic oligomeric structure of bradavidin II is unique among avidin proteins. PROTEIN SCIENCE, 22(7), 980-994. https://doi.org/10.1002/pro.2281

Sharma, V., & Misteli, T. (2013). Non-coding RNAs in DNA damage and repair. FEBS Letters, 587(13), 1832-1839. https://doi.org/10.1016/j.febslet.2013.05.006

Kiiski, H., Äänismaa, R., Tenhunen, J., Hagman, S., Ylä-Outinen, L., Aho, A., ... Narkilahti, S. (2013). Healthy human CSF promotes glial differentiation of hESC-derived neural cells while retaining spontaneous activity in existing neuronal networks. Biology Open, 2(6), 605-612. https://doi.org/10.1242/bio.20134648

Ryan Geyer, R., Musa-Aziz, R., Enkavi, G., Mahinthichaichan, P., Tajkhorshid, E., & Boron, W. F. (2013). Movement of NH3 through the human urea transporter B: A new gas channel. AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY, 304(12), 1447-1457. https://doi.org/10.1152/ajprenal.00609.2012

Mordon, S. R., Vuylsteke, M. E., Mahieu, P., & Betrouni, N. (2013). Endovenous laser treatment of the great saphenous vein: Measurement of the pullback speed of the fiber by magnetic tracking. IRBM, 34(3), 252-256. https://doi.org/10.1016/j.irbm.2012.10.004

Kellokumpu-Lehtinen, P., Tuunanen, T., Asola, R., Elomaa, L., Heikkinen, M., Kokko, R., ... Ala-Luhtala, T. (2013). Weekly paclitaxel-An effective treatment for advanced breast cancer. Anticancer Research, 33(6), 2623-2628.

Kilpeläinen, T. P., Tammela, T. L., Malila, N., Hakama, M., Santti, H., Määttänen, L., ... Auvinen, A. (2013). Prostate cancer mortality in the finnish randomized screening trial. JOURNAL OF THE NATIONAL CANCER INSTITUTE, 105(10), 719-725. https://doi.org/10.1093/jnci/djt038

Matos Simoes, R. D., Dehmer, M., & Emmert-Streib, F. (2013). Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information. BMC Genomics, 14(1), [324]. https://doi.org/10.1186/1471-2164-14-324

Emmert-Streib, F., De Matos Simoes, R., Tripathi, S., & Dehmer, M. (2013). Overview of Public Cancer Databases, Resources, and Visualization Tools. teoksessa Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data (Vuosikerta 3, Sivut 27-40). Wiley-VCH. https://doi.org/10.1002/9783527665471.ch2

Emmert-Streib, F., & Dehmer, M. (Toimittajat) (2013). Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data. Wiley-VCH. https://doi.org/10.1002/9783527665471

Tripathi, S., Glazko, G. V., & Emmert-Streib, F. (2013). Ensuring the statistical soundness of competitive gene set approaches: Gene filtering and genome-scale coverage are essential. Nucleic Acids Research, 41(7). https://doi.org/10.1093/nar/gkt054

Simpson, C. L., Cropp, C. D., Wahlfors, T., George, A., Jones, M. S., Harper, U., ... Bailey-Wilson, J. E. (2013). Genetic heterogeneity in Finnish hereditary prostate cancer using ordered subset analysis. EUROPEAN JOURNAL OF HUMAN GENETICS, 21(4), 437-443. https://doi.org/10.1038/ejhg.2012.185

Eeles, R. A., Olama, A. A. A., Benlloch, S., Saunders, E. J., Leongamornlert, D. A., Tymrakiewicz, M., ... Easton, D. F. (2013). Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. Nature Genetics, 45(4), 385-391. https://doi.org/10.1038/ng.2560

Elme, A., Utriainen, M., Kellokumpu-Lehtinen, P., Palva, T., Luoto, R., Nikander, R., ... Saarto, T. (2013). Obesity and physical inactivity are related to impaired physical health of breast cancer survivors. Anticancer Research, 33(4), 1595-1602.

Tossavainen, H., Helppolainen, S. H., Määttä, J. A. E., Pihlajamaa, T., Hytönen, V. P., Kulomaa, M. S., & Permi, P. (2013). Resonance assignments of the 56 kDa chimeric avidin in the biotin-bound and free forms. BIOMOLECULAR NMR ASSIGNMENTS, 7(1), 35-38. https://doi.org/10.1007/s12104-012-9371-4

Elamin, E., Masclee, A., Juuti-Uusitalo, K., van IJzendoorn, S., Troost, F., Pieters, H. J., ... Jonkers, D. (2013). Fatty Acid Ethyl Esters Induce Intestinal Epithelial Barrier Dysfunction via a Reactive Oxygen Species-Dependent Mechanism in a Three-Dimensional Cell Culture Model. PLoS ONE, 8(3), [e58561]. https://doi.org/10.1371/journal.pone.0058561

Bruchmann, A., Roller, C., Walther, T. V., Schäfer, G., Lehmusvaara, S., Visakorpi, T., ... Maddalo, D. (2013). Bcl-2 associated athanogene 5 (Bag5) is overexpressed in prostate cancer and inhibits ER-stress induced apoptosis. BMC Cancer, 13, [96]. https://doi.org/10.1186/1471-2407-13-96

Veitonmäki, T., Tammela, T. L. J., Auvinen, A., & Murtola, T. J. (2013). Use of aspirin, but not other non-steroidal anti-inflammatory drugs is associated with decreased prostate cancer risk at the population level. EUROPEAN JOURNAL OF CANCER, 49(4), 938-945. https://doi.org/10.1016/j.ejca.2012.09.030

Emmert-Streib, F. (2013). Structural Properties and Complexity of a New Network Class: Collatz Step Graphs. PLoS ONE, 8(2), [e56461]. https://doi.org/10.1371/journal.pone.0056461

Betrouni, N., Nevoux, P., Leroux, B., Colin, P., Puech, P., & Mordon, S. (2013). An anatomically realistic and adaptable prostate phantom for laser thermotherapy treatment planning. Medical Physics, 40(2), [022701]. https://doi.org/10.1118/1.4788673

Poojari, C., Kukol, A., & Strodel, B. (2013). How the amyloid-β peptide and membranes affect each other: An extensive simulation study. Biochimica et Biophysica Acta: Biomembranes, 1828(2), 327-339. https://doi.org/10.1016/j.bbamem.2012.09.001

Betrouni, N., Colin, P., Bozzini, G., & Mordon, S. (2013). Image-guided laser therapies for prostate cancer. IRBM, 34(1), 28-32. https://doi.org/10.1016/j.irbm.2012.12.006

Shaikh, S. A., Li, J., Enkavi, G., Wen, P. C., Huang, Z., & Tajkhorshid, E. (2013). Visualizing functional motions of membrane transporters with molecular dynamics simulations. Biochemistry, 52(4), 569-587. https://doi.org/10.1021/bi301086x

Blake, J. A., Dolan, M., Drabkin, H., Hill, D. P., Ni, L., Sitnikov, D., ... Westerfield, M. (2013). Gene ontology annotations and resources. Nucleic Acids Research, 41(D1). https://doi.org/10.1093/nar/gks1050

Apweiler, R., Martin, M. J., O'Donovan, C., Magrane, M., Alam-Faruque, Y., Alpi, E., ... Zhang, J. (2013). Update on activities at the Universal Protein Resource (UniProt) in 2013. Nucleic Acids Research, 41(D1). https://doi.org/10.1093/nar/gks1068

Al Olama, A. A., Kote-Jarai, Z., Schumacher, F. R., Wiklund, F., Berndt, S. I., Benlloch, S., ... Eeles, R. A. (2013). A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease. HUMAN MOLECULAR GENETICS, 22(2), 408-415. [dds425]. https://doi.org/10.1093/hmg/dds425

Xu, J., Lange, E. M., Lu, L., Zheng, S. L., Wang, Z., Thibodeau, S. N., ... Isaacs, W. B. (2013). HOXB13 is a susceptibility gene for prostate cancer: Results from the International Consortium for Prostate Cancer Genetics (ICPCG). HUMAN GENETICS, 132(1), 5-14. https://doi.org/10.1007/s00439-012-1229-4

Rauhala, H. E., Teppo, S., Niemelä, S., & Kallioniemi, A. (2013). Silencing of the arp2/3 complex disturbs pancreatic cancer cell migration. Anticancer Research, 33(1), 45-52.

Ikonen, L., Kerkelä, E., Metselaar, G., Stuart, M. C. A., De Jong, M. R., & Aalto-Setälä, K. (2013). 2D and 3D self-assembling nanofiber hydrogels for cardiomyocyte culture. BioMed Research International, 2013, [285678]. https://doi.org/10.1155/2013/285678

Simoes, R. D. M., Dehmer, M., & Emmert-Streib, F. (2013). B-cell lymphoma gene regulatory networks: Biological consistency among inference methods. Frontiers in Genetics, 4(DEC), [00281]. https://doi.org/10.3389/fgene.2013.00281

Rantanen, T., Kauttu, T., Åkerla, J., Honkanen, T., Krogerus, L., Salo, J., ... Oksala, N. (2013). CIP2A expression and prognostic role in patients with esophageal adenocarcinoma. MEDICAL ONCOLOGY, 30(3), [684]. https://doi.org/10.1007/s12032-013-0684-7

Toivonen, S., Ojala, M., Hyysalo, A., Ilmarinen, T., Rajala, K., Pekkanen-Mattila, M., ... Otonkoski, T. (2013). Comparative analysis of targeted differentiation of human induced pluripotent stem cells (hiPSCs) and human embryonic stem cells reveals variability associated with incomplete transgene silencing in retrovirally derived hiPSCs lines. Stem Cells Translational Medicine, 2(2), 83-93. https://doi.org/10.5966/sctm.2012-0047

Kong, L., Aho, K. L., Granberg, K., Roos, C., & Autio, R. (2013). DBComposer: An R package for integrative analysis and management of gene expression microarray data. teoksessa 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings (Sivut 92-93). [6735944] https://doi.org/10.1109/GENSIPS.2013.6735944

Patrikoski, M., Juntunen, M., Boucher, S., Campbell, A., Vemuri, M. C., Mannerström, B., & Miettinen, S. (2013). Development of fully defined xeno-free culture system for the preparation and propagation of cell therapy-compliant human adipose stem cells. STEM CELL RESEARCH & THERAPY, 4(2), [27]. https://doi.org/10.1186/scrt175

Kyllönen, L., Haimi, S., Mannerström, B., Huhtala, H., Rajala, K. M., Skottman, H., ... Miettinen, S. (2013). Effects of different serum conditions on osteogenic differentiation of human adipose stem cells in vitro. STEM CELL RESEARCH & THERAPY, 4(1), [17]. https://doi.org/10.1186/scrt165

Chen, J., Eshghi, S. T., Bova, G. S., Li, Q. K., Li, X., & Zhang, H. (2013). Epithelium percentage estimation facilitates epithelial quantitative protein measurement in tissue specimens. CLINICAL PROTEOMICS, 10(1), [18]. https://doi.org/10.1186/1559-0275-10-18

Alimi, N. A., Bink, M. C. A. M., Dieleman, J. A., Nicolaï, M., Wubs, M., Heuvelink, E., ... van Eeuwijk, F. A. (2013). Genetic and QTL analyses of yield and a set of physiological traits in pepper. EUPHYTICA, 190(2), 181-201. https://doi.org/10.1007/s10681-012-0767-0

Diban, N., Haimi, S., Bolhuis-Versteeg, L., Teixeira, S., Miettinen, S., Poot, A., ... Stamatialis, D. (2013). Hollow fibers of poly(lactide-co-glycolide) and poly(ε-caprolactone) blends for vascular tissue engineering applications. Acta Biomaterialia, 9(5), 6450-6458. https://doi.org/10.1016/j.actbio.2013.01.005

Emmert-Streib, F. (2013). Influence of the experimental design of gene expression studies on the inference of gene regulatory networks: Environmental factors. PeerJ, 2013(1), [e10]. https://doi.org/10.7717/peerj.10

Ylilauri, M., Mattila, E., Nurminen, E. M., Käpylä, J., Niinivehmas, S. P., Määttä, J. A., ... Pentikäinen, O. T. (2013). Molecular mechanism of T-cell protein tyrosine phosphatase (TCPTP) activation by mitoxantrone. Biochimica et biophysica acta: proteins and proteomics, 1834(10), 1988-1997. https://doi.org/10.1016/j.bbapap.2013.07.001

Magarkar, A., Stepniewski, M., Karakas, E., Rog, T., Yliperttula, M., Urtti, A., & Bunker, A. (2013). Molecular modeling of the PEGylated bilayer as a model for the PEGylated liposome surface in the bloodstream. teoksessa Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013 (Vuosikerta 2, Sivut 576-578)

Jayakrishnan, R., Mathew, A., Uutela, A., Auvinen, A., & Sebastian, P. (2013). Multiple approaches and participation rate for a community based smoking cessation intervention trial in rural Kerala, India. ASIAN PACIFIC JOURNAL OF CANCER PREVENTION, 14(5), 2891-2896. https://doi.org/10.7314/APJCP.2013.14.5.2891

Rodriguez-Canales, J., Hanson, J. C., Hipp, J. D., Balis, U. J., Tangrea, M. A., Emmert-Buck, M. R., & Bova, G. S. (2013). Optimal molecular profiling of tissue and tissue components: De fining the best processing and microdissection methods for biomedical applications. teoksessa Pancreatic Cancer: Methods and Protocols (Vuosikerta 980, Sivut 61-120). (Methods in Molecular Biology; Vuosikerta 980). HUMANA PRESS INC. https://doi.org/10.1007/978-1-62703-287-2_5

Emmert-Streib, F. (2013). Personalized medicine: Has it started yet? A reconstruction of the early history. Frontiers in Genetics, 3(JAN), [Article 313]. https://doi.org/10.3389/fgene.2012.00313

Iosifidis, A., Tefas, A., & Pitas, I. (2013). Person identification from actions based on Artificial Neural Networks. teoksessa IEEE Workshop on Computational Intelligence in Biometrics and Identity Management, CIBIM (Sivut 7-13) https://doi.org/10.1109/CIBIM.2013.6607907

Iosifidis, A., Tefas, A., & Pitas, I. (2013). Person identification from actions based on dynemes and discriminant learning. teoksessa 2013 International Workshop on Biometrics and Forensics, IWBF 2013 https://doi.org/10.1109/IWBF.2013.6547320

Lahtinen, K., Maydannik, P., Kääriäinen, T., Seppänen, T., Cameron, D. C., Johansson, P., ... Kuusipalo, J. (2013). Roll-to-roll atomic layer deposition for flexible substrates. teoksessa TAPPI International Conference on Nanotechnology 2013 (Sivut 726-739). TAPPI Press.

Jayakrishnan, R., Uutela, A., Mathew, A., Auvinen, A., Mathew, P. S., & Sebastian, P. (2013). Smoking cessation intervention in Rural Kerala, India: Findings of a randomised controlled trial. ASIAN PACIFIC JOURNAL OF CANCER PREVENTION, 14(11), 6797-6802. https://doi.org/10.7314/APJCP.2013.14.11.6797

Liimatainen, V., Sariola, V., & Zhou, Q. (2013). Undercut edges for robust capillary self-alignment in hybrid microassembly. teoksessa 8th Annual IEEE International Conference on Nano/Micro Engineered and Molecular Systems, IEEE NEMS 2013 (Sivut 1088-1091). [6559911] https://doi.org/10.1109/NEMS.2013.6559911

Stepien, M., Chinga-Carrasco, G., Saarinen, J. J., Teisala, H., Tuominen, M., Aromaa, M., ... Toivakka, M. (2013). Wear resistance of nanoparticle coatings on paperboard. teoksessa TAPPI International Conference on Nanotechnology 2013 (Sivut 821-829). TAPPI Press.

Reid, C. N., Stevenson, M., Abogunrin, F., Ruddock, M. W., Emmert-Streib, F., Lamont, J. V., & Williamson, K. E. (2012). Standardization of Diagnostic Biomarker Concentrations in Urine: The Hematuria Caveat. PLoS ONE, 7(12), [e53354]. https://doi.org/10.1371/journal.pone.0053354

Huuskonen, A., Lappalainen, J., Oksala, N., Santtila, M., Häkkinen, K., Kyröläinen, H., & Atalay, M. (2012). Aerobic Fitness Does Not Modify the Effect of FTO Variation on Body Composition Traits. PLoS ONE, 7(12), [e51635]. https://doi.org/10.1371/journal.pone.0051635

Pukkala, E., Helminen, M., Haldorsen, T., Hammar, N., Kojo, K., Linnersjö, A., ... Auvinen, A. (2012). Cancer incidence among Nordic airline cabin crew. International Journal of Cancer, 131(12), 2886-2897. https://doi.org/10.1002/ijc.27551

Emmert-Streib, F., Tripathi, S., & Matos Simoes, R. D. (2012). Harnessing the complexity of gene expression data from cancer: From single gene to structural pathway methods. Biology Direct, 7, [44]. https://doi.org/10.1186/1745-6150-7-44

Rahmatallah, Y., Emmert-Streib, F., & Glazko, G. (2012). Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses. Bioinformatics, 28(23), 3073-3080. https://doi.org/10.1093/bioinformatics/bts579

Lisitsyna, E. S., Durandin, N. A., Ivanov, A. A., Streltsov, S. A., Susova, O. Y., Shtil, A. A., ... Kuzmin, V. A. (2012). Characteristics of complex formation between monomeric and dimeric bisbenzimidazoles and AT-containing polynucleotide. MOLECULAR BIOLOGY, 46(6), 823-827. https://doi.org/10.1134/S0026893312060131

Ojala, M., Rajala, K., Pekkanen-Mattila, M., Miettinen, M., Huhtala, H., & Aalto-Setälä, K. (2012). Culture Conditions Affect Cardiac Differentiation Potential of Human Pluripotent Stem Cells. PLoS ONE, 7(10), [e48659]. https://doi.org/10.1371/journal.pone.0048659

Saeger, J., Hytönen, V. P., Klotzsch, E., & Vogel, V. (2012). GFP's Mechanical Intermediate States. PLoS ONE, 7(10), [e46962]. https://doi.org/10.1371/journal.pone.0046962

Jurkiewicz, P., Olzyńska, A., Cwiklik, L., Conte, E., Jungwirth, P., Megli, F. M., & Hof, M. (2012). Biophysics of lipid bilayers containing oxidatively modified phospholipids: Insights from fluorescence and EPR experiments and from MD simulations. Biochimica et Biophysica Acta: Biomembranes, 1818(10), 2388-2402. https://doi.org/10.1016/j.bbamem.2012.05.020

Wu, G. H. M., Auvinen, A., Määttänen, L., Tammela, T. L. J., Stenman, U. H., Hakama, M., ... Chen, H. H. (2012). Number of screens for overdetection as an indicator of absolute risk of overdiagnosis in prostate cancer screening. International Journal of Cancer, 131(6), 1367-1375. https://doi.org/10.1002/ijc.27340

Smith, M. R., Saad, F., Egerdie, B., Sieber, P. R., Tammela, T. L. J., Ke, C., ... Goessl, C. (2012). Sarcopenia during androgen-deprivation therapy for prostate cancer. Journal of clinical oncology : official journal of the American Society of Clinical Oncology, 30(26), 3271-3276. https://doi.org/10.1200/JCO.2011.38.8850

Aavikko, M., Li, S. P., Saarinen, S., Alhopuro, P., Kaasinen, E., Morgunova, E., ... Vahteristo, P. (2012). Loss of SUFU function in familial multiple meningioma. AMERICAN JOURNAL OF HUMAN GENETICS, 91(3), 520-526. https://doi.org/10.1016/j.ajhg.2012.07.015

Tammela, T. L. J. (2012). Endocrine prevention and treatment of prostate cancer. Molecular and Cellular Endocrinology, 360(1-2), 59-67. https://doi.org/10.1016/j.mce.2012.03.002

Kujala, K., Paavola, J., Lahti, A., Larsson, K., Pekkanen-Mattila, M., Viitasalo, M., ... Aalto-Setälä, K. (2012). Cell Model of Catecholaminergic Polymorphic Ventricular Tachycardia Reveals Early and Delayed Afterdepolarizations. PLoS ONE, 7(9), [e44660]. https://doi.org/10.1371/journal.pone.0044660

Saarto, T., Penttinen, H. M., Sievänen, H., Kellokumpu-Lehtinen, P. L., Hakamies-Blomqvist, L., Nikander, R., ... Luoma, M. L. (2012). Effectiveness of a 12-month exercise program on physical performance and quality of life of breast cancer survivors. Anticancer Research, 32(9), 3875-3884.

Nikander, R., Sievänen, H., Ojala, K., Kellokumpu-Lehtinen, P. L., Palva, T., Blomqvist, C., ... Saarto, T. (2012). Effect of exercise on bone structural traits, physical performance and body composition in breast cancer patients - A 12-month RCT. Journal of Musculoskeletal and Neuronal Interactions, 12(3), 127-135.

Bozzini, G., Colin, P., Betrouni, N., Nevoux, P., Ouzzane, A., Puech, P., ... Mordon, S. (2012). Photodynamic therapy in urology: What can we do now and where are we heading? PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, 9(3), 261-273. https://doi.org/10.1016/j.pdpdt.2012.01.005

Egerdie, R. B., Saad, F., Smith, M. R., Tammela, T. L. J., Heracek, J., Sieber, P., ... Goessl, C. (2012). Responder analysis of the effects of denosumab on bone mineral density in men receiving androgen deprivation therapy for prostate cancer. PROSTATE CANCER AND PROSTATIC DISEASES, 15(3), 308-312. https://doi.org/10.1038/pcan.2012.18

Kellokumpu-Lehtinen, P. L., Hjälm-Eriksson, M., Thellenberg-Karlsson, C., Åström, L., Franzen, L., Marttila, T., ... Ginman, C. (2012). Toxicity in patients receiving adjuvant docetaxel hormonal treatment after radical radiotherapy for intermediate or high-risk prostate cancer: A preplanned safety report of the SPCG-13 trial. PROSTATE CANCER AND PROSTATIC DISEASES, 15(3), 303-307. https://doi.org/10.1038/pcan.2012.13

Liu, W., Lindberg, J., Sui, G., Luo, J., Egevad, L., Li, T., ... Xu, J. (2012). Identification of novel CHD1-associated collaborative alterations of genomic structure and functional assessment of CHD1 in prostate cancer. Oncogene, 31(35), 3939-3948. https://doi.org/10.1038/onc.2011.554

Högnäs, G., Tuomi, S., Veltel, S., Mattila, E., Murumägi, A., Edgren, H., ... Ivaska, J. (2012). Cytokinesis failure due to derailed integrin traffic induces aneuploidy and oncogenic transformation in vitro and in vivo. Oncogene, 31(31), 3597-3606. https://doi.org/10.1038/onc.2011.527

Hervonen, P., Tulijoki, T., & Kellokumpu-Lehtinen, P. (2012). No additional benefit of adding ifosfamide to docetaxel in castration-resistant metastatic prostate cancer. Anticancer Research, 32(8), 3305-3310.

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