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Smolander, J, Dehmer, M & Emmert-Streib, F 2019, 'Comparing deep belief networks with support vector machines for classifying gene expression data from complex disorders', FEBS Open Bio, Vuosikerta. 9, Nro 7, Sivut 1232-1248. https://doi.org/10.1002/2211-5463.12652

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Kadekar, S, Nawale, GN, Karlsson, K, Ålander, C, Oommen, OP & Varghese, OP 2019, 'Synthetic Design of Asymmetric miRNA with an Engineered 3′ Overhang to Improve Strand Selection', Molecular Therapy - Nucleic Acids, Vuosikerta. 16, Sivut 597-604. https://doi.org/10.1016/j.omtn.2019.04.012

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Kotila, T, Kogan, K, Enkavi, G, Guo, S, Vattulainen, I, Goode, BL & Lappalainen, P 2018, 'Structural basis of actin monomer re-charging by cyclase-Associated protein', Nature Communications, Vuosikerta. 9, Nro 1, 1892. https://doi.org/10.1038/s41467-018-04231-7

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Chevrier, DM, Raich, L, Rovira, C, Das, A, Luo, Z, Yao, Q, Chatt, A, Xie, J, Jin, R, Akola, J & Zhang, P 2018, 'Molecular-Scale Ligand Effects in Small Gold-Thiolate Nanoclusters', Journal of the American Chemical Society, Vuosikerta. 140, Nro 45, Sivut 15430-15436. https://doi.org/10.1021/jacs.8b09440

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Pantsar, T, Rissanen, S, Dauch, D, Laitinen, T, Vattulainen, I & Poso, A 2018, 'Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling', PLoS Computational Biology, Vuosikerta. 14, Nro 9, e1006458. https://doi.org/10.1371/journal.pcbi.1006458

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Gavas, RD, Roy, S, Chatterjee, D, Tripathy, SR, Chakravarty, K & Sinha, A 2018, 'Enhancing the usability of low-cost eye trackers for rehabilitation applications', PLoS ONE, Vuosikerta. 13, Nro 6, e0196348. https://doi.org/10.1371/journal.pone.0196348

Virtanen, J, Somppi, S, Törnqvist, H, Jeyhani, V, Fiedler, P, Gizatdinova, Y, Majaranta, P, Väätäjä, H, Cardó, AV, Lekkala, J, Tuukkanen, S, Surakka, V, Vainio, O & Vehkaoja, A 2018, 'Evaluation of dry electrodes in canine heart rate monitoring', Sensors, Vuosikerta. 18, Nro 6, 1757. https://doi.org/10.3390/s18061757

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Neeli-Venkata, R, Oliveira, SMD, Martins, L, Startceva, S, Bahrudeen, M, Fonseca, JM, Minoia, M & Ribeiro, AS 2018, 'The precision of the symmetry in Z-ring placement in Escherichia coli is hampered at critical temperatures', Physical Biology, Vuosikerta. 15, Nro 5, 056002. https://doi.org/10.1088/1478-3975/aac1cb

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Sutka, A, Timusk, M, Joost, U, Ignatans, R & Maiorov, M 2018, 'Switchable light reflectance in dilute magneto-optical colloids based on nickel ferrite nanowires', e-Journal of Surface Science and Nanotechnology, Vuosikerta. 16, Sivut 119-121. https://doi.org/10.1380/ejssnt.2018.119

Musa, A, Ghoraie, LS, Zhang, SD, Glazko, G, Yli-Harja, O, Dehmer, M, Haibe-Kains, B & Emmert-Streib, F 2018, 'A review of connectivity map and computational approaches in pharmacogenomics', Briefings in Bioinformatics, Vuosikerta. 19, Nro 3, Sivut 506-523. https://doi.org/10.1093/bib/bbw112

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Karjalainen, M, Kontunen, A, Saari, S, Rönkkö, T, Lekkala, J, Roine, A & Oksala, N 2018, 'The characterization of surgical smoke from various tissues and its implications for occupational safety', PLoS ONE, Vuosikerta. 13, Nro 4, e0195274. https://doi.org/10.1371/journal.pone.0195274

Vuorinen, EM, Rajala, NK, Ihalainen, TO & Kallioniemi, A 2018, 'Depletion of nuclear import protein karyopherin alpha 7 (KPNA7) induces mitotic defects and deformation of nuclei in cancer cells', BMC Cancer, Vuosikerta. 18, Nro 1, 325. https://doi.org/10.1186/s12885-018-4261-5

Kuismanen, K, Juntunen, M, Narra Girish, N, Tuominen, H, Huhtala, H, Nieminen, K, Hyttinen, J & Miettinen, S 2018, 'Functional Outcome of Human Adipose Stem Cell Injections in Rat Anal Sphincter Acute Injury Model', Stem Cells Translational Medicine, Vuosikerta. 7, Nro 3, Sivut 295-304. https://doi.org/10.1002/sctm.17-0208

Karvinen, J, Joki, T, Ylä-Outinen, L, Koivisto, JT, Narkilahti, S & Kellomäki, M 2018, 'Soft hydrazone crosslinked hyaluronan- and alginate-based hydrogels as 3D supportive matrices for human pluripotent stem cell-derived neuronal cells', Reactive and Functional Polymers, Vuosikerta. 124, Sivut 29-39. https://doi.org/10.1016/j.reactfunctpolym.2017.12.019

Mehrang, S, Pietilä, J & Korhonen, I 2018, 'An activity recognition framework deploying the random forest classifier and a single optical heart rate monitoring and triaxial accelerometer wrist-band', Sensors, Vuosikerta. 18, Nro 2, 613. https://doi.org/10.3390/s18020613

Gumulya, Y, Boxall, NJ, Khaleque, HN, Santala, V, Carlson, RP & Kaksonen, AH 2018, 'In a quest for engineering acidophiles for biomining applications: Challenges and opportunities', Genes, Vuosikerta. 9, Nro 2, 116. https://doi.org/10.3390/genes9020116

Lehtinen, T, Efimova, E, Santala, S & Santala, V 2018, 'Improved fatty aldehyde and wax ester production by overexpression of fatty acyl-CoA reductases', Microbial Cell Factories, Vuosikerta. 17, Nro 1, 19. https://doi.org/10.1186/s12934-018-0869-z

Hakala, M, Kalimeri, M, Enkavi, G, Vattulainen, I & Lappalainen, P 2018, 'Molecular mechanism for inhibition of twinfilin by phosphoinositides', Journal of Biological Chemistry, Vuosikerta. 293, Nro 13, Sivut 4818-4829. https://doi.org/10.1074/jbc.RA117.000484

Tienaho, J, Poikulainen, E, Sarjala, T, Muilu-Mäkelä, R, Santala, V & Karp, M 2018, 'A Bioscreening Technique for Ultraviolet Irradiation Protective Natural Substances', Photochemistry and Photobiology, Vuosikerta. 94, Nro 6, Sivut 1273-1280. https://doi.org/10.1111/php.12954

Rinta-Kanto, JM, Pehkonen, K, Sinkko, H, Tamminen, MV & Timonen, S 2018, 'Archaea are prominent members of the prokaryotic communities colonizing common forest mushrooms', Canadian Journal of Microbiology, Vuosikerta. 64, Nro 10, Sivut 716-726. https://doi.org/10.1139/cjm-2018-0035

Ojansivu, M, Wang, X, Hyväri, L, Kellomäki, M, Hupa, L, Vanhatupa, S & Miettinen, S 2018, 'Bioactive glass induced osteogenic differentiation of human adipose stem cells is dependent on cell attachment mechanism and mitogen-activated protein kinases', European Cells and Materials, Vuosikerta. 35, Sivut 53-71. https://doi.org/10.22203/eCM.v035a05

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Khanongnuch, R, Di Capua, F, Lakaniemi, A-M, Rene, ER & Lens, PNL 2018, 'Effect of N/S ratio on anoxic thiosulfate oxidation in a fluidized bed reactor: Experimental and artificial neural network model analysis', Process Biochemistry, Vuosikerta. 68, Sivut 171-181. https://doi.org/10.1016/j.procbio.2018.02.018

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Ojansivu, M, Johansson, L, Vanhatupa, S, Tamminen, I, Hannula, M, Hyttinen, J, Kellomäki, M & Miettinen, S 2018, 'Knitted 3D Scaffolds of Polybutylene Succinate Support Human Mesenchymal Stem Cell Growth and Osteogenesis', Stem Cells International, Vuosikerta. 2018, 5928935. https://doi.org/10.1155/2018/5928935

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Ferreira, ARV, Haapanen, J, Mäkelä, JM, Bratvold, JE, Nilsen, O, Tuominen, M, Alves, VD & Coelhoso, IM 2017, 'Comparison of different coating techniques on the properties of FucoPol films', International Journal of Biological Macromolecules, Vuosikerta. 103, Sivut 268-274. https://doi.org/10.1016/j.ijbiomac.2017.05.021

Enkavi, G, Mikkolainen, H, Güngör, B, Ikonen, E & Vattulainen, I 2017, 'Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin', PLoS Computational Biology, Vuosikerta. 13, Nro 10, e1005831. https://doi.org/10.1371/journal.pcbi.1005831

Granberg, KJ, Annala, M, Lehtinen, B, Kesseli, J, Haapasalo, J, Ruusuvuori, P, Yli-Harja, O, Visakorpi, T, Haapasalo, H, Nykter, M & Zhang, W 2017, 'Strong FGFR3 staining is a marker for FGFR3 fusions in diffuse gliomas', Neuro-Oncology, Vuosikerta. 19, Nro 9, Sivut 1206-1216. https://doi.org/10.1093/neuonc/nox028

Sciacca, MFM, Romanucci, V, Zarrelli, A, Monaco, I, Lolicato, F, Spinella, N, Galati, C, Grasso, G, D'Urso, L, Romeo, M, Diomede, L, Salmona, M, Bongiorno, C, Di Fabio, G, La Rosa, C & Milardi, D 2017, 'Inhibition of Aβ Amyloid Growth and Toxicity by Silybins: The Crucial Role of Stereochemistry', ACS Chemical Neuroscience, Vuosikerta. 8, Nro 8, Sivut 1767-1778. https://doi.org/10.1021/acschemneuro.7b00110

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Juchheim, J, Annighöfer, P, Ammer, C, Calders, K, Raumonen, P & Seidel, D 2017, 'How management intensity and neighborhood composition affect the structure of beech (Fagus sylvatica L.) trees', TREES-STRUCTURE AND FUNCTION, Vuosikerta. 31, Nro 5, Sivut 1723–1735. https://doi.org/10.1007/s00468-017-1581-z

Tripathi, S, Lloyd-Price, J, Ribeiro, A, Yli-Harja, O, Dehmer, M & Emmert-Streib, F 2017, 'sgnesR: An R package for simulating gene expression data from an underlying real gene network structure considering delay parameters', BMC Bioinformatics, Vuosikerta. 18, Nro 1, 325. https://doi.org/10.1186/s12859-017-1731-8

Vuorio, J, Vattulainen, I & Martinez-Seara, H 2017, 'Atomistic fingerprint of hyaluronan–CD44 binding', PLoS Computational Biology, Vuosikerta. 13, Nro 7, e1005663. https://doi.org/10.1371/journal.pcbi.1005663

Niinimäki, S, Narra, N, Härkönen, L, Abe, S, Nikander, R, Hyttinen, J, Knüsel, C & Sievänen, H 2017, 'The relationship between loading history and proximal femoral diaphysis cross-sectional geometry', American Journal of Human Biology, Vuosikerta. 29, Nro 4, e22965. https://doi.org/10.1002/ajhb.22965

Nogueira, IBR, Ribeiro, AM, Martins, MAF, Rodrigues, AE, Koivisto, H & Loureiro, JM 2017, 'Dynamics of a True Moving Bed separation process: Linear model identification and advanced process control', Journal of Chromatography A, Vuosikerta. 1504. https://doi.org/10.1016/j.chroma.2017.04.060

Mokkila, S, Postila, PA, Rissanen, S, Juhola, H, Vattulainen, I & Róg, T 2017, 'Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles', ACS Chemical Neuroscience, Vuosikerta. 8, Nro 6, Sivut 1242-1250. https://doi.org/10.1021/acschemneuro.6b00395

Urbanucci, A, Barfeld, SJ, Kytölä, V, Itkonen, HM, Coleman, IM, Vodák, D, Sjöblom, L, Sheng, X, Tolonen, T, Minner, S, Burdelski, C, Kivinummi, KK, Kohvakka, A, Kregel, S, Takhar, M, Alshalalfa, M, Davicioni, E, Erho, N, Lloyd, P, Karnes, RJ, Ross, AE, Schaeffer, EM, Vander Griend, DJ, Knapp, S, Corey, E, Feng, FY, Nelson, PS, Saatcioglu, F, Knudsen, KE, Tammela, TLJ, Sauter, G, Schlomm, T, Nykter, M, Visakorpi, T & Mills, IG 2017, 'Androgen Receptor Deregulation Drives Bromodomain-Mediated Chromatin Alterations in Prostate Cancer', Cell Reports, Vuosikerta. 19, Nro 10, Sivut 2045-2059. https://doi.org/10.1016/j.celrep.2017.05.049

Rissanen, S, Grzybek, M, Orlowski, A, Róg, T, Cramariuc, O, Levental, I, Eggeling, C, Sezgin, E & Vattulainen, I 2017, 'Phase partitioning of GM1 and its bodipy-labeled analog determine their different binding to Cholera Toxin', Frontiers in Physiology, Vuosikerta. 8, Nro MAY, 252. https://doi.org/10.3389/fphys.2017.00252

Lehtinen, B, Raita, A, Kesseli, J, Annala, M, Nordfors, K, Yli-Harja, O, Zhang, W, Visakorpi, T, Nykter, M, Haapasalo, H & Granberg, KJ 2017, 'Clinical association analysis of ependymomas and pilocytic astrocytomas reveals elevated FGFR3 and FGFR1 expression in aggressive ependymomas', BMC Cancer, Vuosikerta. 17, Nro 1, 310. https://doi.org/10.1186/s12885-017-3274-9

Manna, M, Javanainen, M, Martinez-Seara Monne, H, Gabius, H-J, Rog, T & Vattulainen, I 2017, 'Long-chain GM1 gangliosides alter transmembrane domain registration through interdigitation', Biochimica et Biophysica Acta: Biomembranes, Vuosikerta. 1859, Nro 5, Sivut 870-878. https://doi.org/10.1016/j.bbamem.2017.01.033

Mah, PT, Novakovic, D, Saarinen, J, van Landeghem, S, Peltonen, L, Laaksonen, T, Isomäki, A & Strachan, CJ 2017, 'Elucidation of Compression-Induced Surface Crystallization in Amorphous Tablets Using Sum Frequency Generation (SFG) Microscopy', Pharmaceutical Research, Vuosikerta. 34, Nro 5, Sivut 957-970. https://doi.org/10.1007/s11095-016-2046-6

Kahraman, M, Ozbay, A, Yuksel, H, Solmaz, R, Demir, B & Caglayan, H 2017, 'Tunable Plasmonic Silver Nanodomes for Surface-Enhanced Raman Scattering', Plasmonics, Sivut 1-11. https://doi.org/10.1007/s11468-017-0573-6

Higashino, T, Nakatsuji, H, Fukuda, R, Okamoto, H, Imai, H, Matsuda, T, Tochio, H, Shirakawa, M, Tkachenko, NV, Hashida, M, Murakami, T & Imahori, H 2017, 'Hexaphyrin as a Potential Theranostic Dye for Photothermal Therapy and 19F Magnetic Resonance Imaging', ChemBioChem, Vuosikerta. 18, Nro 10, Sivut 951-959. https://doi.org/10.1002/cbic.201700071

Bilkova, E, Pleskot, R, Rissanen, S, Sun, S, Czogalla, A, Cwiklik, L, Róg, T, Vattulainen, I, Cremer, PS, Jungwirth, P & Coskun, Ü 2017, 'Calcium Directly Regulates Phosphatidylinositol 4,5-Bisphosphate Headgroup Conformation and Recognition', Journal of the American Chemical Society, Vuosikerta. 139, Nro 11, Sivut 4019-4024. https://doi.org/10.1021/jacs.6b11760

Milani, R, Houbenov, N, Fernandez-Palacio, F, Cavallo, G, Luzio, A, Haataja, J, Giancane, G, Saccone, M, Priimägi, A, Metrangolo, P & Ikkala, O 2017, 'Hierarchical Self-Assembly of Halogen-Bonded Block Copolymer Complexes into Upright Cylindrical Domains', CheM, Vuosikerta. 2, Nro 3, Sivut 417-426. https://doi.org/10.1016/j.chempr.2017.02.003

Euro, L, Haapanen, O, Róg, T, Vattulainen, I, Suomalainen, A & Sharma, V 2017, 'Atomistic Molecular Dynamics Simulations of Mitochondrial DNA Polymerase γ: Novel Mechanisms of Function and Pathogenesis', Biochemistry, Vuosikerta. 56, Nro 9, Sivut 1227-1238. https://doi.org/10.1021/acs.biochem.6b00934

Lehtinen, T, Santala, V & Santala, S 2017, 'Twin-layer biosensor for real-time monitoring of alkane metabolism', FEMS Microbiology Letters, Vuosikerta. 364, Nro 6, fnx053. https://doi.org/10.1093/femsle/fnx053

Guixà-González, R, Albasanz, JL, Rodriguez-Espigares, I, Pastor, M, Sanz, F, Martí-Solano, M, Manna, M, Martinez-Seara, H, Hildebrand, PW, Martín, M & Selent, J 2017, 'Membrane cholesterol access into a G-protein-coupled receptor', Nature Communications, Vuosikerta. 8, 14505. https://doi.org/10.1038/ncomms14505

Izdebskaya, Y, Shvedov, V, Assanto, G & Krolikowski, W 2017, 'Magnetic routing of light-induced waveguides', Nature Communications, Vuosikerta. 8, 14452. https://doi.org/10.1038/ncomms14452

Sislian, R, da Silva, FV, Gedraite, R, Jokinen, H & Rajan, DK 2017, The use of mathematical modeling for the development of a low cost fuzzy gain schedule neutralization control system. julkaisussa Transactions on Engineering Technologies: World Congress on Engineering and Computer Science 2015. Springer Singapore, Sivut 525-539, WORLD CONGRESS ON ENGINEERING AND COMPUTER SCIENCE, 1/01/00. https://doi.org/10.1007/978-981-10-2717-8_37

Kuuliala, L, Abatih, E, Ioannidis, AG, Vanderroost, M, De Meulenaer, B, Ragaert, P & Devlieghere, F 2017, 'Multivariate statistical analysis for the identification of potential seafood spoilage indicators', Food Control, Vuosikerta. 84, Sivut 49-60. https://doi.org/10.1016/j.foodcont.2017.07.018

Balanta, MAG, Orsi Gordo, V, Carvalho, ARH, Puustinen, J, Alghamdi, HM, Henini, M, Galeti, HVA, Guina, M & Galvão Gobato, Y 2017, 'Polarization resolved photoluminescence in GaAs1−xBix/GaAs quantum wells', Journal of Luminescence, Vuosikerta. 182, Sivut 49-52. https://doi.org/10.1016/j.jlumin.2016.10.008

Rahmatallah, Y, Zybailov, B, Emmert-Streib, F & Glazko, G 2017, 'GSAR: Bioconductor package for Gene Set analysis in R', BMC Bioinformatics, Vuosikerta. 18, Nro 1, 61. https://doi.org/10.1186/s12859-017-1482-6

Hyysalo, A, Ristola, M, Joki, T, Honkanen, M, Vippola, M & Narkilahti, S 2017, 'Aligned Poly(ε-caprolactone) Nanofibers Guide the Orientation and Migration of Human Pluripotent Stem Cell-Derived Neurons, Astrocytes, and Oligodendrocyte Precursor Cells In Vitro', MACROMOLECULAR BIOSCIENCE, Vuosikerta. 17, Nro 7, 1600517. https://doi.org/10.1002/mabi.201600517

Grabon, A, Orłowski, A, Tripathi, A, Vuorio, J, Javanainen, M, Róg, T, Lönnfors, M, McDermott, MI, Siebert, G, Somerharju, P, Vattulainen, I & Bankaitis, VA 2017, 'Dynamics and energetics of the mammalian phosphatidylinositol transfer protein phospholipid exchange cycle', Journal of Biological Chemistry, Vuosikerta. 292, Nro 35, Sivut 14438-14455. https://doi.org/10.1074/jbc.M117.791467

Khorramdel, B, Torkkeli, A & Mäntysalo, M 2017, 'Electrical Contacts in SOI MEMS Using Aerosol Jet Printing', IEEE Journal of the Electron Devices Society, Vuosikerta. 6, Sivut 34-40. https://doi.org/10.1109/JEDS.2017.2764498

Glazko, G, Rahmatallah, Y, Zybailov, B & Emmert-Streib, F 2017, Extracting the strongest signals from omics data: Differentially expressed pathways and beyond. julkaisussa Methods in Molecular Biology. Methods in Molecular Biology, Vuosikerta. 1613, HUMANA PRESS INC, Sivut 125-159. https://doi.org/10.1007/978-1-4939-7027-8_7

Valkonen, M, Kartasalo, K, Liimatainen, K, Nykter, M, Latonen, L & Ruusuvuori, P 2017, 'Metastasis detection from whole slide images using local features and random forests', Cytometry Part A, Vuosikerta. 91, Nro 6, Sivut 555-565. https://doi.org/10.1002/cyto.a.23089

Wnętrzak, A, Makyła-Juzak, K, Filiczkowska, A, Kulig, W & Dynarowicz-Łątka, P 2017, 'Oxysterols Versus Cholesterol in Model Neuronal Membrane. I. The Case of 7-Ketocholesterol. The Langmuir Monolayer Study', Journal of Membrane Biology, Vuosikerta. 250, Nro 5, Sivut 553–564. https://doi.org/10.1007/s00232-017-9984-8

Lahbib, I, Valkonen, A, Rzaigui, M & Smirani, W 2017, 'Synthesis, Structural Characterization, Hirshfeld Surface and Antioxidant Activity Analysis of a Novel Organic Cation Antimonate Complex', Journal of Cluster Science, Vuosikerta. 28, Nro 4, Sivut 2239–2252. https://doi.org/10.1007/s10876-017-1217-x

Wu, X, Bhattarai, A, Korkola, P, Pertovaara, H, Eskola, H & Kellokumpu-Lehtinen, PL 2017, 'The Association Between Liver and Tumor [18F]FDG Uptake in Patients with Diffuse Large B Cell Lymphoma During Chemotherapy', Molecular Imaging and Biology, Vuosikerta. 19, Nro 5, Sivut 787–794. https://doi.org/10.1007/s11307-017-1044-3

Kalli, AC, Rog, T, Vattulainen, I, Campbell, ID & Sansom, MSP 2017, 'The Integrin Receptor in Biologically Relevant Bilayers: Insights from Molecular Dynamics Simulations', Journal of Membrane Biology, Vuosikerta. 250, Sivut 337-351. https://doi.org/10.1007/s00232-016-9908-z

Kandavalli, V, Startceva, S & Sanches Ribeiro, A 2017, Transcription Initiation Controls Skewness of the Distribution of Intervals Between RNA Productions. julkaisussa G Paulo J.S (Toimittaja), 31st European Simulation and Modelling Conference: ESM'2017. EUROSIS, Portugal, Sivut 397-403, 1/01/00.

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Stupnikov, A, Tripathi, S, De Matos Simoes, R, McArt, D, Salto-Tellez, M, Glazko, G, Dehmer, M & Emmert-Streib, F 2016, 'SamExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files', Bioinformatics, Vuosikerta. 32, Nro 21, Sivut 3345-3347. https://doi.org/10.1093/bioinformatics/btw475

Will, OM, Purcz, N, Chalaris, A, Heneweer, C, Boretius, S, Purcz, L, Nikkola, L, Ashammakhi, N, Kalthoff, H, Glüer, CC, Wiltfang, J, Açil, Y & Tiwari, S 2016, 'Increased survival rate by local release of diclofenac in a murine model of recurrent oral carcinoma', International Journal of Nanomedicine, Vuosikerta. 11, Sivut 5311-5321. https://doi.org/10.2147/IJN.S109199

Kandavalli, VK, Tran, H & Ribeiro, AS 2016, 'Effects of σ factor competition are promoter initiation kinetics dependent', Biochimica et Biophysica Acta: Gene Regulatory Mechanisms, Vuosikerta. 1859, Nro 10, Sivut 1281-1288. https://doi.org/10.1016/j.bbagrm.2016.07.011

Kuleta, P, Sarewicz, M, Postila, P, Róg, T & Osyczka, A 2016, 'Identifying involvement of Lys251/Asp252 pair in electron transfer and associated proton transfer at the quinone reduction site of Rhodobacter capsulatus cytochrome bc1', Biochimica et Biophysica Acta: Bioenergetics, Vuosikerta. 1857, Nro 10, Sivut 1661-1668. https://doi.org/10.1016/j.bbabio.2016.07.003

Vattulainen, I & Róg, T 2016, 'Lipid membranes: Theory and simulations bridged to experiments', Biochimica et Biophysica Acta: Biomembranes, Vuosikerta. 1858, Nro 10, Sivut 2251-2253. https://doi.org/10.1016/j.bbamem.2016.06.007

Javanainen, M & Martinez-Seara, H 2016, 'Efficient preparation and analysis of membrane and membrane protein systems', Biochimica et Biophysica Acta: Biomembranes, Vuosikerta. 1858, Nro 10, Sivut 2468-2482. https://doi.org/10.1016/j.bbamem.2016.02.036

Kepczynski, M & Róg, T 2016, 'Functionalized lipids and surfactants for specific applications', Biochimica et Biophysica Acta: Biomembranes, Vuosikerta. 1858, Nro 10, Sivut 2362-2379. https://doi.org/10.1016/j.bbamem.2016.02.038

Zhou, Q, Sariola, V, Latifi, K & Liimatainen, V 2016, 'Controlling the motion of multiple objects on a Chladni plate', Nature Communications, Vuosikerta. 7, 12764. https://doi.org/10.1038/ncomms12764

Korpinen, L, Kuisti, H & Elovaara, J 2016, 'Current densities and total contact currents during forest clearing tasks under 400kV power lines', Bioelectromagnetics, Vuosikerta. 37, Nro 6, Sivut 423-428. https://doi.org/10.1002/bem.21980

Kaurola, P, Sharma, V, Vonk, A, Vattulainen, I & Róg, T 2016, 'Distribution and dynamics of quinones in the lipid bilayer mimicking the inner membrane of mitochondria', Biochimica et Biophysica Acta: Biomembranes, Vuosikerta. 1858, Nro 9, Sivut 2116-2122. https://doi.org/10.1016/j.bbamem.2016.06.016

Tan, LC, Nancharaiah, YV, van Hullebusch, ED & Lens, PNL 2016, 'Selenium: environmental significance, pollution, and biological treatment technologies', Biotechnology Advances, Vuosikerta. 34, Nro 5, Sivut 886-907. https://doi.org/10.1016/j.biotechadv.2016.05.005

Emmert-Streib, F, Dehmer, M & Yli-Harja, O 2016, 'Against dataism and for data sharing of big biomedical and clinical data with research parasites', Frontiers in Genetics, Vuosikerta. 7, Nro AUG, 154. https://doi.org/10.3389/fgene.2016.00154

Sharma, V & Wikström, M 2016, 'The role of the K-channel and the active-site tyrosine in the catalytic mechanism of cytochrome c oxidase', Biochimica et Biophysica Acta: Bioenergetics, Vuosikerta. 1857, Nro 8, Sivut 1111-1115. https://doi.org/10.1016/j.bbabio.2016.02.008

Halonen, H, Kyllönen, L, Ihalainen, TO, Miettinen, S & Hyttinen, J 2016, 'Abstract: Direction as a vibration loading parameter in osteogenic differentiation of adipose stem cells' Artikkeli esitetty, Lyon, Ranska, 10/07/16 - 13/07/16, .

Santala, V, Karp, M & Santala, S 2016, 'Bioluminescence-based system for rapid detection of natural transformation', FEMS Microbiology Letters, Vuosikerta. 363, Nro 13, fnw125. https://doi.org/10.1093/femsle/fnw125

Roszak, J, Catalán, J, Järventaus, H, Lindberg, HK, Suhonen, S, Vippola, M, Stepnik, M & Norppa, H 2016, 'Effect of particle size and dispersion status on cytotoxicity and genotoxicity of zinc oxide in human bronchial epithelial cells', Mutation Research: Genetic Toxicology and Environmental Mutagenesis, Vuosikerta. 805, Sivut 7-18. https://doi.org/10.1016/j.mrgentox.2016.05.008

Lajunen, T, Kontturi, L-S, Viitala, L, Manna, M, Cramariuc, O, Róg, T, Bunker, A, Laaksonen, T, Viitala, T, Murtomäki, L & Urtti, A 2016, 'Indocyanine Green-Loaded Liposomes for Light-Triggered Drug Release', Molecular Pharmaceutics, Vuosikerta. 13, Nro 6, Sivut 2095-2107. https://doi.org/10.1021/acs.molpharmaceut.6b00207

Razavi, A, Valkama, M & Lohan, ES 2016, 'Robust statistical approaches for RSS-based floor detection in indoor localization', Sensors, Vuosikerta. 16, Nro 6, 793. https://doi.org/10.3390/s16060793

Häkkinen, A & Ribeiro, AS 2016, 'Characterizing rate limiting steps in transcription from RNA production times in live cells', Bioinformatics, Vuosikerta. 32, Nro 9, Sivut 1346-1352. https://doi.org/10.1093/bioinformatics/btv744

Emmert-Streib, F, Tuomisto, L & Yli-Harja, O 2016, 'The need for formally defining "modern medicine" by means of experimental design', Frontiers in Genetics, Vuosikerta. 7, Nro APR, 60. https://doi.org/10.3389/fgene.2016.00060

Vuornos, K, Björninen, M, Talvitie, E, Paakinaho, K, Kellomäki, M, Huhtala, H, Miettinen, S, Seppänen-Kaijansinkko, R & Haimi, S 2016, 'Human Adipose Stem Cells Differentiated on Braided Polylactide Scaffolds is a Potential Approach for Tendon Tissue Engineering', Tissue Engineering Part A, Vuosikerta. 22, Nro 5-6, Sivut 513-523. https://doi.org/10.1089/ten.tea.2015.0276

Nanni, L, Paci, M, Dos Santos, FLC, Skottman, H, Juuti-Uusitalo, K & Hyttinen, J 2016, 'Texture descriptors ensembles enable image-based classification of maturation of human stem cell-derived retinal pigmented epithelium', PLoS ONE, Vuosikerta. 11, Nro 2, e0149399. https://doi.org/10.1371/journal.pone.0149399

Järvinen, P, Nybond, S, Marcourt, L, Ferreira Queiroz, E, Wolfender, JL, Mettälä, A, Karp, M, Vuorela, H, Vuorela, P, Hatakka, A & Tammela, P 2016, 'Cell-based bioreporter assay coupled to HPLC micro-fractionation in the evaluation of antimicrobial properties of the basidiomycete fungus Pycnoporus cinnabarinus', Pharmaceutical Biology, Vuosikerta. 54, Nro 6, Sivut 1-8. https://doi.org/10.3109/13880209.2015.1103754

Nancharaiah, YV, Mohan, SV & Lens, PNL 2016, 'Biological and Bioelectrochemical Recovery of Critical and Scarce Metals', Trends in Biotechnology, Vuosikerta. 34, Nro 2, Sivut 137-155. https://doi.org/10.1016/j.tibtech.2015.11.003

Kulig, W, Cwiklik, L, Jurkiewicz, P, Rog, T & Vattulainen, I 2016, 'Cholesterol oxidation products and their biological importance', Chemistry and Physics of Lipids, Vuosikerta. 199, Sivut 144-160. https://doi.org/10.1016/j.chemphyslip.2016.03.001

Lahti, J, Lavonen, J, Lahtinen, K, Johansson, P, Seppänen, T & Cameron, DC 2016, Improved properties for packaging materials by nanoscale surface modification and ALD barrier coating. julkaisussa TAPPI International Conference on Nanotechnology for Renewable Materials 2016. Vuosikerta. 2, TAPPI Press, Sivut 684-706, 1/01/00.

Teppola, H, Sarkanen, JR, Jalonen, TO & Linne, M-L 2016, 'Morphological Differentiation Towards Neuronal Phenotype of SH-SY5Y Neuroblastoma Cells by Estradiol, Retinoic Acid and Cholesterol', Neurochemical Research, Vuosikerta. 41, Nro 4, Sivut 731-747. https://doi.org/10.1007/s11064-015-1743-6

Metzler, R, Jeon, JH & Cherstvy, AG 2016, 'Non-Brownian diffusion in lipid membranes: Experiments and simulations', Biochimica et Biophysica Acta: Biomembranes, Vuosikerta. 215, Sivut 173–185. https://doi.org/10.1016/j.bbamem.2016.01.022

Neeli-Venkata, R, Martikainen, A, Gupta, A, Goncalves, N, Fonseca, J & Ribeiro, AS 2016, 'Robustness of the process of nucleoid exclusion of protein aggregates in Escherichia coli', Journal of Bacteriology, Vuosikerta. 198, Nro 6, Sivut 898-906. https://doi.org/10.1128/JB.00848-15

Pöyry, S & Vattulainen, I 2016, 'Role of charged lipids in membrane structures: Insight given by simulations', Biochimica et Biophysica Acta: Biomembranes, Sivut 2322–2333. https://doi.org/10.1016/j.bbamem.2016.03.016

Saarinen, JJ, Valtakari, D, Bollström, R, Stepien, M, Haapanen, J, Mäkelä, JM & Toivakka, M 2016, Roll-to-roll application of photocatalytic TiO2 nanoparticles for printed functionality. julkaisussa Advanced Manufacturing, Electronics and Microsystems: TechConnect Briefs 2016. Vuosikerta. 4, TechConnect, Sivut 47-50, 1/01/06.

Rog, T & Koivuniemi, A 2016, 'The biophysical properties of ethanolamine plasmalogens revealed by atomistic molecular dynamics simulations', Biochimica et Biophysica Acta: Biomembranes, Vuosikerta. 1858, Nro 1, Sivut 97-103. https://doi.org/10.1016/j.bbamem.2015.10.023

Kuusela, J, Kim, J, Räsänen, E & Aalto-Setälä, K 2016, 'The Effects of Pharmacological Compounds on Beat Rate Variations in Human Long QT-Syndrome Cardiomyocytes', Stem Cell Reviews and Reports, Vuosikerta. 12, Nro 6, Sivut 698–707. https://doi.org/10.1007/s12015-016-9686-0

Ruddock, MW, De Matos Simoes, R, O'Rourke, D, Duggan, B, Stevenson, M, O'Kane, HF, Curry, D, Abogunrin, F, Emmert-Streib, F, Reid, CN, Maxwell, P, Arthur, K, Mallon, M, Carson, G, Kennedy, G & Williamson, KE 2016, 'Urinary thrombomodulin levels were significantly higher following occupational exposure to chemicals, in the presence of dipstick protein, but not in the presence of dipstick blood', Biology and Medicine, Vuosikerta. 8, Nro 1, 1000260. https://doi.org/10.4172/0974-8369.1000260

Linnanmäki, L, Göransson, H, Havulinna, J, Sippola, P, Karjalainen, T & Leppänen, OV 2016, 'Validity of parameters in static linear testing of flexor tendon repair', Journal of Biomechanics, Vuosikerta. 49, Nro 13, Sivut 2785–2790. https://doi.org/10.1016/j.jbiomech.2016.06.022

Manzini, S, Viiri, LE, Marttila, S & Aalto-Setälä, K 2015, 'A Comparative View on Easy to Deploy non-Integrating Methods for Patient-Specific iPSC Production', Stem Cell Reviews and Reports, Vuosikerta. 11, Nro 6, Sivut 900-908. https://doi.org/10.1007/s12015-015-9619-3

Cervinka, T, Sievänen, H, Lala, D, Cheung, AM, Giangregorio, L & Hyttinen, J 2015, 'A new algorithm to improve assessment of cortical bone geometry in pQCT', Bone, Vuosikerta. 81, Sivut 721-730. https://doi.org/10.1016/j.bone.2015.09.015

Vanhatupa, S, Ojansivu, M, Autio, R, Juntunen, M & Miettinen, S 2015, 'Bone morphogenetic protein-2 induces donor-dependent osteogenic and adipogenic differentiation in human adipose stem cells', Stem Cells Translational Medicine, Vuosikerta. 4, Nro 12, Sivut 1391-1402. https://doi.org/10.5966/sctm.2015-0042

Friis, S, Kesminiene, A, Espina, C, Auvinen, A, Straif, K & Schüz, J 2015, 'European Code against Cancer 4th Edition: Medical exposures, including hormone therapy, and cancer', CANCER EPIDEMIOLOGY, Vuosikerta. 39, Sivut S107-S119. https://doi.org/10.1016/j.canep.2015.08.003

McColl, N, Auvinen, A, Kesminiene, A, Espina, C, Erdmann, F, de Vries, E, Greinert, R, Harrison, J & Schüz, J 2015, 'European Code against Cancer 4th Edition: Ionising and non-ionising radiation and cancer', CANCER EPIDEMIOLOGY, Vuosikerta. 39, Sivut S93-S100. https://doi.org/10.1016/j.canep.2015.03.016

Greinert, R, de Vries, E, Erdmann, F, Espina, C, Auvinen, A, Kesminiene, A & Schüz, J 2015, 'European Code against Cancer 4th Edition: Ultraviolet radiation and cancer', CANCER EPIDEMIOLOGY, Vuosikerta. 39, Sivut S75-S83. https://doi.org/10.1016/j.canep.2014.12.014

Jia, L, Sun, Z, Wu, X, Misteli, T & Sharma, V 2015, 'Gene expression analysis upon lncRNA DDSR1 knockdown in human fibroblasts', Genomics Data, Vuosikerta. 6, Sivut 277-279. https://doi.org/10.1016/j.gdata.2015.10.017

Liao, TYA, Lau, A, Joseph, S, Hytönen, V & Hmama, Z 2015, 'Improving the Immunogenicity of the Mycobacterium bovis BCG Vaccine by Non-Genetic Bacterial Surface Decoration Using the Avidin-Biotin System', PLoS ONE, Vuosikerta. 10, Nro 12, e0145833. https://doi.org/10.1371/journal.pone.0145833

Kannisto, MS, Mangayil, RK, Shrivastava-Bhattacharya, A, Pletschke, BI, Karp, MT & Santala, VP 2015, 'Metabolic engineering of Acinetobacter baylyi ADP1 for removal of Clostridium butyricum growth inhibitors produced from lignocellulosic hydrolysates', Biotechnology for Biofuels, Vuosikerta. 8, Nro 1, 198. https://doi.org/10.1186/s13068-015-0389-6

Ravi, A, Luthra, A, Teixeira, FL, Berger, PR & Coe, JV 2015, 'Tuning the Plasmonic Extinction Resonances of Hexagonal Arrays of Ag Nanoparticles', Plasmonics, Vuosikerta. 10, Nro 6, Sivut 1505-1512. https://doi.org/10.1007/s11468-015-9963-9

Marjakangas, JM, Chen, CY, Lakaniemi, AM, Puhakka, JA, Whang, LM & Chang, JS 2015, 'Simultaneous nutrient removal and lipid production with Chlorella vulgaris on sterilized and non-sterilized anaerobically pretreated piggery wastewater', Biochemical Engineering Journal, Vuosikerta. 103, Sivut 177-184. https://doi.org/10.1016/j.bej.2015.07.011

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Sharma, V, Khurana, S, Kubben, N, Abdelmohsen, K, Oberdoerffer, P, Gorospe, M & Misteli, T 2015, 'A BRCA1-interacting lncRNA regulates homologous recombination', EMBO REPORTS, Vuosikerta. 16, Nro 11, Sivut 1520-1534. https://doi.org/10.15252/embr.201540437

Zorzi, GK, Párraga, JE, Seijo, B & Sanchez, A 2015, 'Comparison of different cationized proteins as biomaterials for nanoparticle-based ocular gene delivery', Colloids and Surfaces B: Biointerfaces, Vuosikerta. 135, Sivut 533-541. https://doi.org/10.1016/j.colsurfb.2015.08.008

Vapaavuori, J, Laventure, A, Bazuin, CG, Lebel, O & Pellerin, C 2015, 'Submolecular Plasticization Induced by Photons in Azobenzene Materials', Journal of the American Chemical Society, Vuosikerta. 137, Nro 42, Sivut 13510-13517. https://doi.org/10.1021/jacs.5b06611

Ryödi, E, Metso, S, Jaatinen, P, Huhtala, H, Saaristo, R, Välimäki, M & Auvinen, A 2015, 'Cancer incidence and mortality in patients treated either with RAI or thyroidectomy for hyperthyroidism', Journal of Clinical Endocrinology and Metabolism, Vuosikerta. 100, Nro 10, Sivut 3710-3717. https://doi.org/10.1210/jc.2015-1874

Hietanen, T, Pitkänen, M, Kapanen, M & Kellokumpu-Lehtinen, PL 2015, 'Effects of single and fractionated irradiation on natural killer cell populations: Radiobiological characteristics of viability and cytotoxicity in vitro', Anticancer Research, Vuosikerta. 35, Nro 10, Sivut 5193-5200.

Tamminen, P, Viheriäkoski, T, Sydänheimo, L & Ukkonen, L 2015, 'ESD qualification data used as the basis for building electrostatic discharge protected areas', Journal of Electrostatics, Vuosikerta. 77, 3024, Sivut 174-181. https://doi.org/10.1016/j.elstat.2015.08.009

Al Olama, AA, Dadaev, T, Hazelett, DJ, Li, Q, Leongamornlert, D, Saunders, EJ, Stephens, S, Cieza-Borrella, C, Whitmore, I, Garcia, SB, Giles, GG, Southey, MC, Fitzgerald, L, Gronberg, H, Wiklund, F, Aly, M, Henderson, BE, Schumacher, F, Haiman, CA, Schleutker, J, Wahlfors, T, Tammela, TL, Nordestgaard, BG, Key, TJ, Travis, RC, Neal, DE, Donovan, JL, Hamdy, FC, Pharoah, P, Pashayan, N, Khaw, KT, Stanford, JL, Thibodeau, SN, Mcdonnell, SK, Schaid, DJ, Maier, C, Vogel, W, Luedeke, M, Herkommer, K, Kibel, AS, Cybulski, C, Wokolorczyk, D, Kluzniak, W, Cannon-Albright, L, Brenner, H, Butterbach, K, Arndt, V, Park, JY, Sellers, T, Lin, HY, Slavov, C, Kaneva, R, Mitev, V, Batra, J, Clements, JA, Spurdle, A, Teixeira, MR, Paulo, P, Maia, S, Pandha, H, Michael, A, Kierzek, A, Govindasami, K, Guy, M, Lophatonanon, A, Muir, K, Viñuela, A, Brown, AA, Freedman, M, Conti, DV, Easton, D, Coetzee, GA, Eeles, RA & Kote-Jarai, Z 2015, 'Multiple novel prostate cancer susceptibility signals identified by fine-mapping of known risk loci among Europeans', HUMAN MOLECULAR GENETICS, Vuosikerta. 24, Nro 19, ddv203, Sivut 5589-5602. https://doi.org/10.1093/hmg/ddv203

Ylipää, A, Kivinummi, K, Kohvakka, A, Annala, M, Latonen, L, Scaravilli, M, Kartasalo, K, Leppänen, SP, Karakurt, S, Seppäla, J, Yli-Harja, O, Tammela, TLJ, Zhang, W, Visakorpi, T & Nykter, M 2015, 'Transcriptome sequencing reveals PCAT5 as a Novel ERG-Regulated long Noncoding RNA in prostate cancer', Cancer Research, Vuosikerta. 75, Nro 19, Sivut 4026-4031. https://doi.org/10.1158/0008-5472.CAN-15-0217

Moradi, M, Enkavi, G & Tajkhorshid, E 2015, 'Atomic-level characterization of transport cycle thermodynamics in the glycerol-3-phosphate: Phosphate antiporter', Nature Communications, Vuosikerta. 6, 8393. https://doi.org/10.1038/ncomms9393

Pashayan, N, Pharoah, PDP, Schleutker, J, Talala, K, Tammela, TLJ, Määttänen, L, Harrington, P, Tyrer, J, Eeles, R, Duffy, SW & Auvinen, A 2015, 'Reducing overdiagnosis by polygenic risk-stratified screening: Findings from the Finnish section of the ERSPC', British Journal of Cancer, Vuosikerta. 113, Nro 7, Sivut 1086-1093. https://doi.org/10.1038/bjc.2015.289

Umbehr, MH, Gurel, B, Murtola, TJ, Sutcliffe, S, Peskoe, SB, Tangen, CM, Goodman, PJ, Thompson, IM, Lippman, SM, Lucia, MS, Parnes, HL, Drake, CG, Nelson, WG, De Marzo, AM & Platz, EA 2015, 'Intraprostatic inflammation is positively associated with serum PSA in men with PSA <4 ngml-1, normal DRE and negative for prostate cancer', PROSTATE CANCER AND PROSTATIC DISEASES, Vuosikerta. 18, Nro 3, Sivut 264-269. https://doi.org/10.1038/pcan.2015.19

Kokko, ME, Mäkinen, AE, Sulonen, MLK & Puhakka, JA 2015, 'Effects of anode potentials on bioelectrogenic conversion of xylose and microbial community compositions', Biochemical Engineering Journal, Vuosikerta. 101, Sivut 248-252. https://doi.org/10.1016/j.bej.2015.06.007

Vicentini, C, Tylcz, JB, Betrouni, N, Mortier, L & Mordon, S 2015, 'Is Daylight-PDT a good treatment option during solar eclipse?', PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, Vuosikerta. 12, Nro 3, Sivut 376-377. https://doi.org/10.1016/j.pdpdt.2015.04.002

Kaapu, KJ, Ahti, J, Tammela, TLJ, Auvinen, A & Murtola, TJ 2015, 'Sotalol, but not digoxin is associated with decreased prostate cancer risk: A population-based case-control study', International Journal of Cancer, Vuosikerta. 137, Nro 5, Sivut 1187-1195. https://doi.org/10.1002/ijc.29470

Sorkio, A, Porter, PJ, Juuti-Uusitalo, K, Meenan, BJ, Skottman, H & Burke, GA 2015, 'Surface Modified Biodegradable Electrospun Membranes as a Carrier for Human Embryonic Stem Cell-Derived Retinal Pigment Epithelial Cells', Tissue Engineering Part A, Vuosikerta. 21, Nro 17-18, Sivut 2301-2314. https://doi.org/10.1089/ten.tea.2014.0640

Penttinen, K, Siirtola, H, Àvalos-Salguero, J, Vainio, T, Juhola, M & Aalto-Setälä, K 2015, 'Novel analysis software for detecting and classifying Ca2+ transient abnormalities in stem cell-derived cardiomyocytes', PLoS ONE, Vuosikerta. 10, Nro 8, e0135806. https://doi.org/10.1371/journal.pone.0135806

Rane, JK, Ylipää, A, Adamson, R, Mann, VM, Simms, MS, Collins, AT, Visakorpi, T, Nykter, M & Maitland, NJ 2015, 'Construction of therapeutically relevant human prostate epithelial fate map by utilising miRNA and mRNA microarray expression data', British Journal of Cancer, Vuosikerta. 113, Nro 4, Sivut 611-615. https://doi.org/10.1038/bjc.2015.262

Sousa, S, Brion, R, Lintunen, M, Kronqvist, P, Sandholm, J, Mönkkönen, J, Kellokumpu-Lehtinen, PL, Lauttia, S, Tynninen, O, Joensuu, H, Heymann, D & Määttä, JA 2015, 'Human breast cancer cells educate macrophages toward the M2 activation status', BREAST CANCER RESEARCH, Vuosikerta. 17, Nro 1, 101. https://doi.org/10.1186/s13058-015-0621-0

Koho, T, Ihalainen, TO, Stark, M, Uusi-Kerttula, H, Wieneke, R, Rahikainen, R, Blazevic, V, Marjomäki, V, Tampé, R, Kulomaa, MS & Hytönen, VP 2015, 'His-tagged norovirus-like particles: A versatile platform for cellular delivery and surface display', European Journal of Pharmaceutics and Biopharmaceutics, Vuosikerta. 96, Sivut 22-31. https://doi.org/10.1016/j.ejpb.2015.07.002

Tran, H, Oliveira, SMDD, Goncalves, N & Ribeiro, AS 2015, 'Kinetics of the cellular intake of a gene expression inducer at high concentrations', Molecular Biosystems, Vuosikerta. 11, Nro 9, Sivut 2579-2587. https://doi.org/10.1039/c5mb00244c

Hokka, M, Mirow, N, Nagel, H, Irqsusi, M, Vogt, S & Kuokkala, VT 2015, 'In-vivo deformation measurements of the human heart by 3D Digital Image Correlation', Journal of Biomechanics, Vuosikerta. 48, Nro 10, Sivut 2217-2220. https://doi.org/10.1016/j.jbiomech.2015.03.015

Ojansivu, M, Vanhatupa, S, Björkvik, L, Häkkänen, H, Kellomäki, M, Autio, R, Ihalainen, JA, Hupa, L & Miettinen, S 2015, 'Bioactive glass ions as strong enhancers of osteogenic differentiation in human adipose stem cells', Acta Biomaterialia, Vuosikerta. 21, Sivut 190-203. https://doi.org/10.1016/j.actbio.2015.04.017

Koivuniemi, A & Vattulainen, I 2015, 'Biogenesis of Nascent High Density Lipoprotein Particles', Structure, Vuosikerta. 23, Nro 7, 3212, Sivut 1153-1154. https://doi.org/10.1016/j.str.2015.06.006

Marjakangas, JM, Lakaniemi, AM, Koskinen, PEP, Chang, JS & Puhakka, JA 2015, 'Lipid production by eukaryotic microorganisms isolated from palm oil mill effluent', Biochemical Engineering Journal, Vuosikerta. 99, Sivut 48-54. https://doi.org/10.1016/j.bej.2015.03.006

Narra, N, Blanquer, SBG, Haimi, SP, Grijpma, DW & Hyttinen, J 2015, 'μCT based assessment of mechanical deformation of designed PTMC scaffolds', Clinical Hemorheology and Microcirculation, Vuosikerta. 60, Nro 1, Sivut 99-108. https://doi.org/10.3233/CH-151931

Rodrigues, PC, Monteiro, A & Lourenço, VM 2015, 'A robust AMMI model for the analysis of genotype-by-environment data', Bioinformatics, Vuosikerta. 32, Nro 1, Sivut 58-66. https://doi.org/10.1093/bioinformatics/btv533

Nybond, S, Karp, M, Yrjönen, T & Tammela, P 2015, 'Bioluminescent whole-cell reporter gene assays as screening tools in the identification of antimicrobial natural product extracts', Journal of Microbiological Methods, Vuosikerta. 114, Sivut 54-56. https://doi.org/10.1016/j.mimet.2015.04.014

Kulig, W, Olzyńska, A, Jurkiewicz, P, Kantola, AM, Komulainen, S, Manna, M, Pourmousa, M, Vazdar, M, Cwiklik, L, Rog, T, Khelashvili, G, Harries, D, Telkki, VV, Hof, M, Vattulainen, I & Jungwirth, P 2015, 'Cholesterol under oxidative stress: How lipid membranes sense oxidation as cholesterol is being replaced by oxysterols', Free Radical Biology and Medicine, Vuosikerta. 84, Sivut 30-41. https://doi.org/10.1016/j.freeradbiomed.2015.03.006

Kapanen, M, Laaksomaa, M, Tulijoki, T, Kellokumpu-Lehtinen, PL & Hyödynmaa, S 2015, 'Effects of remedies made in patient setup process on residual setup errors and margins in head and neck cancer radiotherapy based on 2D image guidance', Reports of Practical Oncology and Radiotherapy, Vuosikerta. 20, Nro 4, Sivut 292-298. https://doi.org/10.1016/j.rpor.2015.03.002

Oliveira, SMD, Chandraseelan, JG, Häkkinen, A, Goncalves, NSM, Yli-Harja, O, Startceva, S & S. Ribeiro, A 2015, 'Single-cell kinetics of a repressilator when implemented in a single-copy plasmid', Molecular Biosystems, Vuosikerta. 11, Nro 7, Sivut 1939-1945. https://doi.org/10.1039/c5mb00012b

Massera, J, Kokkari, A, Närhi, T & Hupa, L 2015, 'The influence of SrO and CaO in silicate and phosphate bioactive glasses on human gingival fibroblasts', Journal of Materials Science: Materials in Medicine, Vuosikerta. 26, Nro 6, 196. https://doi.org/10.1007/s10856-015-5528-x

Laulumaa, S, Nieminen, T, Lehtimäki, M, Aggarwal, S, Simons, M, Koza, MM, Vattulainen, I, Kursula, P & Natali, F 2015, 'Dynamics of the peripheral membrane protein P2 from human myelin measured by neutron scattering: A Comparison between wild-type protein and a hinge mutant', PLoS ONE, Vuosikerta. 10, Nro 6, e128954. https://doi.org/10.1371/journal.pone.0128954

Turpeinen, H, Seppälä, I, Lyytikäinen, LP, Raitoharju, E, Hutri-Kähönen, N, Levula, M, Oksala, N, Waldenberger, M, Klopp, N, Illig, T, Mononen, N, Laaksonen, R, Raitakari, O, Kähönen, M, Lehtimäki, T & Pesu, M 2015, 'A genome-wide expression quantitative trait loci analysis of proprotein convertase subtilisin/kexin enzymes identifies a novel regulatory gene variant for FURIN expression and blood pressure', HUMAN GENETICS, Vuosikerta. 134, Nro 6, Sivut 627-636. https://doi.org/10.1007/s00439-015-1546-5

Nguyen, SD, Javanainen, M, Rissanen, S, Zhao, H, Huusko, J, Kivelä, AM, Ylä-Herttuala, S, Navab, M, Fogelman, AM, Vattulainen, I, Kovanen, PT & Öörni, K 2015, 'Apolipoprotein A-I mimetic peptide 4F blocks sphingomyelinase-induced LDL aggregation', Journal of Lipid Research, Vuosikerta. 56, Nro 6, Sivut 1206-1221. https://doi.org/10.1194/jlr.M059485

Zoni, E, Van Der Horst, G, Van De Merbel, AF, Chen, L, Rane, JK, Pelger, RCM, Collins, AT, Visakorpi, T, Snaar-Jagalska, BE, Maitland, NJ & Van Der Pluijm, G 2015, 'MIR-25 modulates invasivenessand dissemination of human prostate cancer cells via regulation of αv-and α6-integrin expression', Cancer Research, Vuosikerta. 75, Nro 11, Sivut 2326-2336. https://doi.org/10.1158/0008-5472.CAN-14-2155

Dehmer, M, Kurt, Z, Emmert-Streib, F, Them, C, Schulc, E & Hofer, S 2015, 'Structural analysis of treatment cycles representing transitions between nursing organizational units inferred from diabetes', PLoS ONE, Vuosikerta. 10, Nro 6, e0127152. https://doi.org/10.1371/journal.pone.0127152

Olsen, C, Fleming, K, Prendergast, N, Rubio, R, Emmert-Streib, F, Bontempi, G, Quackenbush, J & Haibe-Kains, B 2015, 'Using shRNA experiments to validate gene regulatory networks', Genomics Data, Vuosikerta. 4, Sivut 123-126. https://doi.org/10.1016/j.gdata.2015.03.011

Thomsen, FB, Brasso, K, Christensen, IJ, Johansson, JE, Angelsen, A, Tammela, TLJ & Iversen, P 2015, 'Survival benefit of early androgen receptor inhibitor therapy in locally advanced prostate cancer: Long-term follow-up of the SPCG-6 study', EUROPEAN JOURNAL OF CANCER, Vuosikerta. 51, Nro 10, Sivut 1283-1292. https://doi.org/10.1016/j.ejca.2015.03.021

Fischer, D, Wahlfors, T, Mattila, H, Oja, H, Tammela, TLJ & Schleutker, J 2015, 'MiRNA profiles in lymphoblastoid cell lines of finnish prostate cancer families', PLoS ONE, Vuosikerta. 10, Nro 5, e0127427. https://doi.org/10.1371/journal.pone.0127427

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Kurppa, K, Hytönen, VP, Nakari-Setälä, T, Kulomaa, MS & Linder, MB 2014, 'Molecular engineering of avidin and hydrophobin for functional self-assembling interfaces', Colloids and Surfaces B: Biointerfaces, Vuosikerta. 120, Sivut 102-109. https://doi.org/10.1016/j.colsurfb.2014.05.010

Kurppa, KJ, Rokavec, M, Sundvall, M, Kellokumpu-Lehtinen, PL, Joensuu, H, Brauch, H & Elenius, K 2014, 'ERBB4 promoter polymorphism is associated with poor distant disease-free survival in high-risk early breast cancer', PLoS ONE, Vuosikerta. 9, Nro 7, e102388. https://doi.org/10.1371/journal.pone.0102388

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Dehmer, M, Emmert-Streib, F & Shi, Y 2014, 'Interrelations of graph distance measures based on topological indices', PLoS ONE, Vuosikerta. 9, Nro 4, e94985. https://doi.org/10.1371/journal.pone.0094985

Kristensen, H, Haldrup, C, Strand, S, Mundbjerg, K, Mortensen, MM, Thorsen, K, Ostenfeld, MS, Wild, PJ, Arsov, C, Goering, W, Visakorpi, T, Egevad, L, Lindberg, J, Grönberg, H, Høyer, S, Borre, M, Orntoft, TF & Sørensen, KD 2014, 'Hypermethylation of the GABRẼmiR-452̃miR-224 promoter in prostate cancer predicts biochemical recurrence after radical prostatectomy', Clinical Cancer Research, Vuosikerta. 20, Nro 8, Sivut 2169-2181. https://doi.org/10.1158/1078-0432.CCR-13-2642

Tripathi, S, Dehmer, M & Emmert-Streib, F 2014, 'NetBioV: An R package for visualizing large network data in biology and medicine', Bioinformatics, Vuosikerta. 30, Nro 19, Sivut 2834-2836. https://doi.org/10.1093/bioinformatics/btu384

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Taskinen, B, Airenne, TT, Jänis, J, Rahikainen, R, Johnson, MS, Kulomaa, MS & Hytönen, VP 2014, 'A novel chimeric avidin with increased thermal stability using DNA shuffling', PLoS ONE, Vuosikerta. 9, Nro 3, e92058. https://doi.org/10.1371/journal.pone.0092058

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Mueller, LAJ, Dehmer, M & Emmert-Streib, F 2014, Network-based methods for computational diagnostics by means of R. julkaisussa Computational Medicine: Tools and Challenges. Springer-Verlag Wien, Sivut 185-197. https://doi.org/10.1007/978-3-7091-0947-2_11

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Chen, LS, Fann, JCY, Chiu, SYH, Yen, AMF, Wahlfors, T, Tammela, TL, Chen, HH, Auvinen, A & Schleutker, J 2014, 'Assessing interactions of two loci (rs4242382 and rs10486567) in familial prostate cancer: Statistical evaluation of epistasis', PLoS ONE, Vuosikerta. 9, Nro 2, e89508. https://doi.org/10.1371/journal.pone.0089508

Mikhailova, A, Ilmarinen, T, Uusitalo, H & Skottman, H 2014, 'Small-molecule induction promotes corneal epithelial cell differentiation from human induced pluripotent stem cells', Stem Cell Reports, Vuosikerta. 2, Nro 2, Sivut 219-231. https://doi.org/10.1016/j.stemcr.2013.12.014

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Rahmatallah, Y, Emmert-Streib, F & Glazko, G 2014, 'Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets', Bioinformatics, Vuosikerta. 30, Nro 3, Sivut 360-368. https://doi.org/10.1093/bioinformatics/btt687

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Zhang, D, Pekkanen-Mattila, M, Shahsavani, M, Falk, A, Teixeira, AI & Herland, A 2014, 'A 3D Alzheimer's disease culture model and the induction of P21-activated kinase mediated sensing in iPSC derived neurons', Biomaterials, Vuosikerta. 35, Nro 5, Sivut 1420-1428. https://doi.org/10.1016/j.biomaterials.2013.11.028

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Emmert-Streib, F, Zhang, SD & Hamilton, P 2014, 'Dry computational approaches for wet medical problems', Journal of Translational Medicine, Vuosikerta. 12, Nro 1, 26. https://doi.org/10.1186/1479-5876-12-26

Ji, J, Sharma, V, Qi, S, Guarch, ME, Zhao, P, Luo, Z, Fan, W, Wang, Y, Mbabaali, F, Neculai, D, Esteban, MA, McPherson, JD & Batada, NN 2014, 'Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells', Stem Cell Reports, Vuosikerta. 2, Nro 1, Sivut 44-51. https://doi.org/10.1016/j.stemcr.2013.11.004

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Oksala, NKJ, Ekmekçi, FG, Özsoy, E, Kirankaya, Ş, Kokkola, T, Emecen, G, Lappalainen, J, Kaarniranta, K & Atalay, M 2014, 'Natural thermal adaptation increases heat shock protein levels and decreases oxidative stress', REDOX BIOLOGY, Vuosikerta. 3, Sivut 25-28. https://doi.org/10.1016/j.redox.2014.10.003

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Maria Cherian, R, Gaunitz, S, Nilsson, A, Liu, J, Karlsson, NG & Holgersson, J 2014, 'Shiga-like toxin binds with high avidity to multivalent O-linked blood group P1 determinants on mucin-type fusion proteins', GLYCOBIOLOGY, Vuosikerta. 24, Nro 1, Sivut 26-38. https://doi.org/10.1093/glycob/cwt086

Traylor, M, Mäkelä, KM, Kilarski, LL, Holliday, EG, Devan, WJ, Nalls, MA, Wiggins, KL, Zhao, W, Cheng, YC, Achterberg, S, Malik, R, Sudlow, C, Bevan, S, Raitoharju, E, Oksala, N, Thijs, V, Lemmens, R, Lindgren, A, Slowik, A, Maguire, JM, Walters, M, Algra, A, Sharma, P, Attia, JR, Boncoraglio, GB, Rothwell, PM, de Bakker, PIW, Bis, JC, Saleheen, D, Kittner, SJ, Mitchell, BD, Rosand, J, Meschia, JF, Levi, C, Dichgans, M, Lehtimäki, T, Lewis, CM & Markus, HS 2014, 'A Novel MMP12 Locus Is Associated with Large Artery Atherosclerotic Stroke Using a Genome-Wide Age-at-Onset Informed Approach', PLOS GENETICS, Vuosikerta. 10, Nro 7, e1004469. https://doi.org/10.1371/journal.pgen.1004469

Huang, Q, Whitington, T, Gao, P, Lindberg, JF, Yang, Y, Sun, J, Väisänen, MR, Szulkin, R, Annala, M, Yan, J, Egevad, LA, Zhang, K, Lin, R, Jolma, A, Nykter, M, Manninen, A, Wiklund, F, Vaarala, MH, Visakorpi, T, Xu, J, Taipale, J & Wei, GH 2014, 'A prostate cancer susceptibility allele at 6q22 increases RFX6 expression by modulating HOXB13 chromatin binding', Nature Genetics, Vuosikerta. 46, Nro 2, Sivut 126-135. https://doi.org/10.1038/ng.2862

Kuismanen, K, Sartoneva, R, Haimi, S, Mannerström, B, Tomás, E, Miettinen, S & Nieminen, K 2014, 'Autologous adipose stem cells in treatment of female stress urinary incontinence: Results of a pilot study', Stem Cells Translational Medicine, Vuosikerta. 3, Nro 8, Sivut 936-941. https://doi.org/10.5966/sctm.2013-0197

Zane, L, Sharma, V & Misteli, T 2014, 'Common features of chromatin in aging and cancer: Cause or coincidence?', TRENDS IN CELL BIOLOGY, Vuosikerta. 24, Nro 11, Sivut 686-694. https://doi.org/10.1016/j.tcb.2014.07.001

Křížek, T, Kubíčková, A, Hladílková, J, Coufal, P, Heyda, J & Jungwirth, P 2014, 'Electrophoretic mobilities of neutral analytes and electroosmotic flow markers in aqueous solutions of Hofmeister salts', ELECTROPHORESIS, Vuosikerta. 35, Nro 5, Sivut 617-624. https://doi.org/10.1002/elps.201300544

Emmert-Streib, F 2014, 'Enhancing our understanding of ways to analyze metagenomes', Frontiers in Genetics, Vuosikerta. 5, Nro APR, Article 108. https://doi.org/10.3389/fgene.2014.00108

Kannan, K, Vijayan, D, MubarakAli, D, Praveenkumar, R, Ahamed, AP & Thajuddin, N 2014, 'Evidence-based analysis of a novel symbiotic and epiphytic cyanobacteria associated with Azolla by cyto and molecular taxonomy', Biotechnology, Vuosikerta. 13, Nro 2, Sivut 46-53. https://doi.org/10.3923/biotech.2014.46.53

Emmert-Streib, F, de Matos Simoes, R, Glazko, G, McDade, S, Haibe-Kains, B, Holzinger, A, Dehmer, M & Campbell, F 2014, 'Functional and genetic analysis of the colon cancer network.', BMC Bioinformatics, Vuosikerta. 15, Nro Suppl 6, S6.

Giraudeau, C, Moussaron, A, Stallivieri, A, Mordon, S & Frochot, C 2014, 'Indocyanine green: Photosensitizer or chromophore? Still a debate', CURRENT MEDICINAL CHEMISTRY, Vuosikerta. 21, Nro 16, Sivut 1871-1897.

Olsen, C, Fleming, K, Prendergast, N, Rubio, R, Emmert-Streib, F, Bontempi, G, Haibe-Kains, B & Quackenbush, J 2014, 'Inference and validation of predictive gene networks from biomedical literature and gene expression data', Genomics, Vuosikerta. 103, Nro 5-6, Sivut 329-336. https://doi.org/10.1016/j.ygeno.2014.03.004

Näreoja, T, Ebner, A, Gruber, HJ, Taskinen, B, Kienberger, F, Hänninen, PE, Hytönen, VP, Hinterdorfer, P & Härmä, H 2014, 'Kinetics of bioconjugate nanoparticle label binding in a sandwich-type immunoassay', Analytical and Bioanalytical Chemistry, Vuosikerta. 406, Nro 2, Sivut 493-503. https://doi.org/10.1007/s00216-013-7474-0

Kannisto, M, Aho, T, Karp, M & Santala, V 2014, 'Metabolic engineering of Acinetobacter baylyi ADP1 for improved growth on gluconate and glucose', Applied and Environmental Microbiology, Vuosikerta. 80, Nro 22, Sivut 7021-7027. https://doi.org/10.1128/AEM.01837-14

Guglielmetti, S, Zanoni, I, Balzaretti, S, Miriani, M, Taverniti, V, de Noni, I, Presti, I, Stuknyte, M, Scarafoni, A, Arioli, S, Iametti, S, Bonomi, F, Mora, D, Karp, M & Granucci, F 2014, 'Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain', Applied and Environmental Microbiology, Vuosikerta. 80, Nro 17, Sivut 5170-5177. https://doi.org/10.1128/AEM.00761-14

Akimova, AV, Grin, MA, Golovina, GV, Kokrashvili, TA, Vinogradov, AM, Mironov, AF, Rychkov, GN, Shtil, AA, Kuzmin, VA & Durandin, NA 2014, 'Novel derivatives of bacteriochlorophyll a: Complex formation with albumin and the mechanism of tumor cell photodamage', DOKLADY BIOCHEMISTRY AND BIOPHYSICS, Vuosikerta. 454, Nro 1, Sivut 17-20. https://doi.org/10.1134/S1607672914010062

Vuorenpää, H, Ikonen, L, Kujala, K, Huttala, O, Sarkanen, JR, Ylikomi, T, Aalto-Setälä, K & Heinonen, T 2014, 'Novel in vitro cardiovascular constructs composed of vascular-like networks and cardiomyocytes', IN VITRO CELLULAR AND DEVELOPMENTAL BIOLOGY: ANIMAL, Vuosikerta. 50, Nro 4, Sivut 275-286. https://doi.org/10.1007/s11626-013-9703-4

Fitzpatrick, JM, Bellmunt, J, Fizazi, K, Heidenreich, A, Sternberg, CN, Tombal, B, Alcaraz, A, Bahl, A, Bracarda, S, Di Lorenzo, G, Efstathiou, E, Finn, SP, Fosså, S, Gillessen, S, Kellokumpu-Lehtinen, PL, Lecouvet, FE, Oudard, S, De Reijke, TM, Robson, CN, De Santis, M, Seruga, B & De Wit, R 2014, 'Optimal management of metastatic castration-resistant prostate cancer: Highlights from a European Expert Consensus Panel', EUROPEAN JOURNAL OF CANCER, Vuosikerta. 50, Nro 9, Sivut 1617-1627. https://doi.org/10.1016/j.ejca.2014.03.010

Ju, YSE, Alexandrov, LB, Gerstung, M, Martincorena, I, Nik-Zainal, S, Ramakrishna, M, Davies, HR, Papaemmanuil, E, Gundem, G, Shlien, A, Bolli, N, Behjati, S, Tarpey, PS, Nangalia, J, Massie, CE, Butler, AP, Teague, JW, Vassiliou, GS, Green, AR, Du, MQ, Unnikrishnan, A, Pimanda, JE, Teh, BTE, Munshi, N, Greaves, M, Vyas, P, El-Naggar, AK, Santarius, T, Collins, VP, Grundy, R, Taylor, JA, Hayes, DN, Malkin, D, Foster, CS, Warren, AY, Whitaker, HC, Brewer, D, Eeles, R, Cooper, C, Neal, D, Visakorpi, T, Isaacs, WB, Bova, GS, Flanagan, AM, Futreal, PA, Lynch, AG, Chinnery, PF, McDermott, U, Stratton, MR & Campbell, PJ 2014, 'Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer', eLIFE, Vuosikerta. 3. https://doi.org/10.7554/eLife.02935

Veitonmäki, T, Murtola, TJ, Määttänen, L, Taari, K, Stenman, UH, Tammela, TL & Auvinen, A 2014, 'Prostate cancer risk and nonsteroidal antiinflammatory drug use in the Finnish prostate cancer screening trial.', British Journal of Cancer, Vuosikerta. 111, Nro 7, Sivut 1421-1431. https://doi.org/10.1038/bjc.2014.381

Hakala, T, Sand, J, Kellokumpu-Lehtinen, PL, Huhtala, H, Leinonen, R & Kholová, I 2014, 'Recurrent thyroid cancers have more peritumoural lymphatic vasculature than nonrecurrent thyroid cancers', European Journal of Clinical Investigation, Vuosikerta. 44, Nro 9, Sivut 825-832. https://doi.org/10.1111/eci.12301

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Emmert-Streib, F, Zhang, SD & Hamilton, P 2014, 'Report from the 2nd Summer School in Computational Biology organized by the Queen's University of Belfast', Genomics Data, Vuosikerta. 2, Sivut 37-39. https://doi.org/10.1016/j.gdata.2013.12.001

Pinon, P, Pärssinen, J, Vazquez, P, Bachmann, M, Rahikainen, R, Jacquier, MC, Azizi, L, Määttä, JA, Bastmeyer, M, Hytönen, VP & Wehrle-Haller, B 2014, 'Talin-bound NPLY motif recruits integrin-signaling adapters to regulate cell spreading and mechanosensing', Journal of Cell Biology, Vuosikerta. 205, Nro 2, Sivut 265-281. https://doi.org/10.1083/jcb.201308136

Guglielmetti, S, Balzaretti, S, Taverniti, V, Miriani, M, Milani, C, Scarafoni, A, Corona, S, Ciranna, A, Arioli, S, Santala, V, Iametti, S, Bonomi, F, Ventura, M, Mora, D & Karp, M 2014, 'TgaA, a VirB1-like component belonging to a putative type IV secretion system of Bifidobacterium bifidum MIMBb75', Applied and Environmental Microbiology, Vuosikerta. 80, Nro 17, Sivut 5161-5169. https://doi.org/10.1128/AEM.01413-14

Emmert-Streib, F, Simoes, RDM, Mullan, P, Haibe-Kains, B & Dehmer, M 2014, 'The gene regulatory network for breast cancer: Integrated regulatory landscape of cancer hallmarks', Frontiers in Genetics, Vuosikerta. 5, Nro FEB, Article 15. https://doi.org/10.3389/fgene.2014.00015

Emmert-Streib, F, Dehmer, M & Haibe-Kains, B 2014, 'Untangling statistical and biological models to understand network inference: The need for a genomics network ontology', Frontiers in Genetics, Vuosikerta. 5, Nro AUG, article 229. https://doi.org/10.3389/fgene.2014.00299

Dehmer, M, Emmert-Streib, F & Tripathi, S 2013, 'Large-scale evaluation of molecular descriptors by means of clustering', PLoS ONE, Vuosikerta. 8, Nro 12, e83956. https://doi.org/10.1371/journal.pone.0083956

Häkkinen, MR, Roine, A, Auriola, S, Tuokko, A, Veskimäe, E, Keinänen, TA, Lehtimäki, T, Oksala, N & Vepsäläinen, J 2013, 'Analysis of free, mono- and diacetylated polyamines from human urine by LC-MS/MS', JOURNAL OF CHROMATOGRAPHY B: ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, Vuosikerta. 941, Sivut 81-89. https://doi.org/10.1016/j.jchromb.2013.10.009

Altay, G, Kurt, Z, Dehmer, M & Emmert-Streib, F 2013, 'Netmes: Assessing gene network inference algorithms by network-based measures', Evolutionary Bioinformatics, Vuosikerta. 10. https://doi.org/10.4137/EBO.S13481

Anantharajan, J, Koski, MK, Kursula, P, Hieta, R, Bergmann, U, Myllyharju, J & Wierenga, RK 2013, 'The structural motifs for substrate binding and dimerization of the α subunit of collagen prolyl 4-hydroxylase', Structure, Vuosikerta. 21, Nro 12, Sivut 2107-2118. https://doi.org/10.1016/j.str.2013.09.005

Oksala, N, Pärssinen, J, Seppälä, I, Raitoharju, E, Ivana, K, Hernesniemi, J, Lyytikäinen, LP, Levula, M, Mäkelä, KM, Sioris, T, Kähönen, M, Laaksonen, R, Hytönen, V & Lehtimäki, T 2013, 'Association of neuroimmune guidance cue netrin-1 and its chemorepulsive receptor UNC5B with atherosclerotic plaque expression signatures and stability in human(s) Tampere Vascular Study (TVS)', Circulation: Cardiovascular Genetics, Vuosikerta. 6, Nro 6, Sivut 579-587. https://doi.org/10.1161/CIRCGENETICS.113.000141

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Laurila, EM & Kallioniemi, A 2013, 'The diverse role of miR-31 in regulating cancer associated phenotypes', Genes Chromosomes and Cancer, Vuosikerta. 52, Nro 12, Sivut 1103-1113. https://doi.org/10.1002/gcc.22107

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Poojari, C & Strodel, B 2013, 'Stability of transmembrane amyloid β-peptide and membrane integrity tested by molecular modeling of site-specific Aβ42 mutations', PLoS ONE, Vuosikerta. 8, Nro 11, e78399. https://doi.org/10.1371/journal.pone.0078399

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Taskinen, B, Zmurko, J, Ojanen, M, Kukkurainen, S, Parthiban, M, Määttä, JAE, Leppiniemi, J, Jänis, J, Parikka, M, Turpeinen, H, Rämet, M, Pesu, M, Johnson, MS, Kulomaa, MS, Airenne, TT & Hytönen, VP 2013, 'Zebavidin - An Avidin-Like Protein from Zebrafish', PLoS ONE, Vuosikerta. 8, Nro 10, e77207. https://doi.org/10.1371/journal.pone.0077207

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Kleber, ME, Seppälä, I, Pilz, S, Hoffmann, MM, Tomaschitz, A, Oksala, N, Raitoharju, E, Lyytikäinen, LP, Mäkelä, KM, Laaksonen, R, Kähönen, M, Raitakari, OT, Huang, J, Kienreich, K, Fahrleitner-Pammer, A, Drechsler, C, Krane, V, Boehm, BO, Koenig, W, Wanner, C, Lehtimäki, T, März, W & Meinitzer, A 2013, 'Genome-wide association study identifies 3 genomic loci significantly associated with serum levels of homoarginine: The atheroremo consortium', Circulation: Cardiovascular Genetics, Vuosikerta. 6, Nro 5, Sivut 505-513. https://doi.org/10.1161/CIRCGENETICS.113.000108

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Högnäs, G, Hämälistö, S, Rilla, K, Laine, JO, Vilkki, V, Murumägi, A, Edgren, H, Kallioniemi, O & Ivaska, J 2013, 'Aneuploidy facilitates oncogenic transformation via specific genetic alterations, including Twist2 upregulation', Carcinogenesis, Vuosikerta. 34, Nro 9, Sivut 2000-2009. https://doi.org/10.1093/carcin/bgt171

Bozzini, G, Colin, P, Betrouni, N, Maurage, CA, Leroy, X, Simonin, S, Martin-Schmitt, C, Villers, A & Mordon, S 2013, 'Efficiency of 5-ALA mediated photodynamic therapy on hypoxic prostate cancer: A preclinical study on the dunning R3327-AT2 rat tumor model', PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, Vuosikerta. 10, Nro 3, Sivut 296-303. https://doi.org/10.1016/j.pdpdt.2013.01.003

Rahu, K, Hakulinen, T, Smailyte, G, Stengrevics, A, Auvinen, A, Inskip, PD, Boice, JD & Rahu, M 2013, 'Site-specific cancer risk in the Baltic cohort of Chernobyl cleanup workers, 1986-2007', EUROPEAN JOURNAL OF CANCER, Vuosikerta. 49, Nro 13, Sivut 2926-2933. https://doi.org/10.1016/j.ejca.2013.04.014

Nickerson, ML, Im, KM, Misner, KJ, Tan, W, Lou, H, Gold, B, Wells, DW, Bravo, HC, Fredrikson, KM, Harkins, TT, Milos, P, Zbar, B, Linehan, WM, Yeager, M, Andresson, T, Dean, M & Bova, GS 2013, 'Somatic alterations contributing to metastasis of a castration-resistant prostate cancer', HUMAN MUTATION, Vuosikerta. 34, Nro 9, Sivut 1231-1241. https://doi.org/10.1002/humu.22346

Dixit, D, Ghildiyal, R, Anto, NP, Ghosh, S, Sharma, V & Sen, E 2013, 'Guggulsterone sensitizes glioblastoma cells to Sonic hedgehog inhibitor SANT-1 induced apoptosis in a Ras/NFκB dependent manner', Cancer Letters, Vuosikerta. 336, Nro 2, Sivut 347-358. https://doi.org/10.1016/j.canlet.2013.03.025

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Chen, J, Xi, J, Tian, Y, Bova, GS & Zhang, H 2013, 'Identification, prioritization, and evaluation of glycoproteins for aggressive prostate cancer using quantitative glycoproteomics and antibody-based assays on tissue specimens', Proteomics, Vuosikerta. 13, Nro 15, Sivut 2268-2277. https://doi.org/10.1002/pmic.201200541

Venojärvi, M, Oksala, N, Kinnunen, S & Atalay, M 2013, Stress Proteins and Heat Shock Proteins: Role in Muscle Building and Sports Nutrition. julkaisussa Nutrition and Enhanced Sports Performance: Muscle Building, Endurance, and Strength. Elsevier Inc., Sivut 229-235. https://doi.org/10.1016/B978-0-12-396454-0.00023-0

Loi, S, Michiels, S, Lambrechts, D, Fumagalli, D, Claes, B, Kellokumpu-Lehtinen, PL, Bono, P, Kataja, V, Piccart, MJ, Joensuu, H & Sotiriou, C 2013, 'Somatic mutation profiling and associations with prognosis and trastuzumab benefit in early breast cancer', JOURNAL OF THE NATIONAL CANCER INSTITUTE, Vuosikerta. 105, Nro 13, Sivut 960-967. https://doi.org/10.1093/jnci/djt121

Diban, N, Haimi, S, Bolhuis-Versteeg, L, Teixeira, S, Miettinen, S, Poot, A, Grijpma, D & Stamatialis, D 2013, 'Development and characterization of poly(ε-caprolactone) hollow fiber membranes for vascular tissue engineering', Journal of Membrane Science, Vuosikerta. 438, Sivut 29-37. https://doi.org/10.1016/j.memsci.2013.03.024

Liu, W, Xie, CC, Thomas, CY, Kim, ST, Lindberg, J, Egevad, L, Wang, Z, Zhang, Z, Sun, J, Sun, J, Koty, PP, Kader, AK, Cramer, SD, Bova, GS, Zheng, SL, Grönberg, H, Isaacs, WB & Xu, J 2013, 'Genetic markers associated with early cancer-specific mortality following prostatectomy', Cancer, Vuosikerta. 119, Nro 13, Sivut 2405-2412. https://doi.org/10.1002/cncr.27954

Kosola, J, Vaara, JP, Ahotupa, M, Kyröläinen, H, Santtila, M, Oksala, N, Atalay, M & Vasankari, T 2013, 'Elevated concentration of oxidized LDL together with poor cardiorespiratory and abdominal muscle fitness predicts metabolic syndrome in young men', METABOLISM: CLINICAL AND EXPERIMENTAL, Vuosikerta. 62, Nro 7, Sivut 992-999. https://doi.org/10.1016/j.metabol.2013.01.013

Leppiniemi, J, Meir, A, Kahkonen, N, Kukkurainen, S, Maatta, JA, Ojanen, M, Janis, J, Kulomaa, MS, Livnah, O & Hytonen, VP 2013, 'The highly dynamic oligomeric structure of bradavidin II is unique among avidin proteins', PROTEIN SCIENCE, Vuosikerta. 22, Nro 7, Sivut 980-994. https://doi.org/10.1002/pro.2281

Sharma, V & Misteli, T 2013, 'Non-coding RNAs in DNA damage and repair', FEBS Letters, Vuosikerta. 587, Nro 13, Sivut 1832-1839. https://doi.org/10.1016/j.febslet.2013.05.006

Kiiski, H, Äänismaa, R, Tenhunen, J, Hagman, S, Ylä-Outinen, L, Aho, A, Yli-Hankala, A, Bendel, S, Skottman, H & Narkilahti, S 2013, 'Healthy human CSF promotes glial differentiation of hESC-derived neural cells while retaining spontaneous activity in existing neuronal networks', Biology Open, Vuosikerta. 2, Nro 6, Sivut 605-612. https://doi.org/10.1242/bio.20134648

Ryan Geyer, R, Musa-Aziz, R, Enkavi, G, Mahinthichaichan, P, Tajkhorshid, E & Boron, WF 2013, 'Movement of NH3 through the human urea transporter B: A new gas channel', AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY, Vuosikerta. 304, Nro 12, Sivut 1447-1457. https://doi.org/10.1152/ajprenal.00609.2012

Mordon, SR, Vuylsteke, ME, Mahieu, P & Betrouni, N 2013, 'Endovenous laser treatment of the great saphenous vein: Measurement of the pullback speed of the fiber by magnetic tracking', IRBM, Vuosikerta. 34, Nro 3, Sivut 252-256. https://doi.org/10.1016/j.irbm.2012.10.004

Kellokumpu-Lehtinen, P, Tuunanen, T, Asola, R, Elomaa, L, Heikkinen, M, Kokko, R, Järvenpää, R, Lehtinen, I, Maiche, A, Kaleva-Kerola, J, Huusko, M, Möykkynen, K & Ala-Luhtala, T 2013, 'Weekly paclitaxel-An effective treatment for advanced breast cancer', Anticancer Research, Vuosikerta. 33, Nro 6, Sivut 2623-2628.

Kilpeläinen, TP, Tammela, TL, Malila, N, Hakama, M, Santti, H, Määttänen, L, Stenman, UH, Kujala, P & Auvinen, A 2013, 'Prostate cancer mortality in the finnish randomized screening trial', JOURNAL OF THE NATIONAL CANCER INSTITUTE, Vuosikerta. 105, Nro 10, Sivut 719-725. https://doi.org/10.1093/jnci/djt038

Matos Simoes, RD, Dehmer, M & Emmert-Streib, F 2013, 'Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information', BMC Genomics, Vuosikerta. 14, Nro 1, 324. https://doi.org/10.1186/1471-2164-14-324

Emmert-Streib, F, De Matos Simoes, R, Tripathi, S & Dehmer, M 2013, Overview of Public Cancer Databases, Resources, and Visualization Tools. julkaisussa Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data. Vuosikerta. 3, Wiley-VCH, Sivut 27-40. https://doi.org/10.1002/9783527665471.ch2

Emmert-Streib, F & Dehmer, M (toim) 2013, Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data. Wiley-VCH. https://doi.org/10.1002/9783527665471

Tripathi, S, Glazko, GV & Emmert-Streib, F 2013, 'Ensuring the statistical soundness of competitive gene set approaches: Gene filtering and genome-scale coverage are essential', Nucleic Acids Research, Vuosikerta. 41, Nro 7. https://doi.org/10.1093/nar/gkt054

Simpson, CL, Cropp, CD, Wahlfors, T, George, A, Jones, MS, Harper, U, Ponciano-Jackson, D, Tammela, T, Schleutker, J & Bailey-Wilson, JE 2013, 'Genetic heterogeneity in Finnish hereditary prostate cancer using ordered subset analysis', EUROPEAN JOURNAL OF HUMAN GENETICS, Vuosikerta. 21, Nro 4, Sivut 437-443. https://doi.org/10.1038/ejhg.2012.185

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Elme, A, Utriainen, M, Kellokumpu-Lehtinen, P, Palva, T, Luoto, R, Nikander, R, Huovinen, R, Kautiainen, H, Järvenpää, S, Penttinen, HM, Vehmanen, L, Jääskeläinen, AS, Ruohola, J, Blomqvist, C & Saarto, T 2013, 'Obesity and physical inactivity are related to impaired physical health of breast cancer survivors', Anticancer Research, Vuosikerta. 33, Nro 4, Sivut 1595-1602.

Tossavainen, H, Helppolainen, SH, Määttä, JAE, Pihlajamaa, T, Hytönen, VP, Kulomaa, MS & Permi, P 2013, 'Resonance assignments of the 56 kDa chimeric avidin in the biotin-bound and free forms', BIOMOLECULAR NMR ASSIGNMENTS, Vuosikerta. 7, Nro 1, Sivut 35-38. https://doi.org/10.1007/s12104-012-9371-4

Elamin, E, Masclee, A, Juuti-Uusitalo, K, van IJzendoorn, S, Troost, F, Pieters, HJ, Dekker, J & Jonkers, D 2013, 'Fatty Acid Ethyl Esters Induce Intestinal Epithelial Barrier Dysfunction via a Reactive Oxygen Species-Dependent Mechanism in a Three-Dimensional Cell Culture Model', PLoS ONE, Vuosikerta. 8, Nro 3, e58561. https://doi.org/10.1371/journal.pone.0058561

Bruchmann, A, Roller, C, Walther, TV, Schäfer, G, Lehmusvaara, S, Visakorpi, T, Klocker, H, Cato, ACB & Maddalo, D 2013, 'Bcl-2 associated athanogene 5 (Bag5) is overexpressed in prostate cancer and inhibits ER-stress induced apoptosis', BMC Cancer, Vuosikerta. 13, 96. https://doi.org/10.1186/1471-2407-13-96

Veitonmäki, T, Tammela, TLJ, Auvinen, A & Murtola, TJ 2013, 'Use of aspirin, but not other non-steroidal anti-inflammatory drugs is associated with decreased prostate cancer risk at the population level', EUROPEAN JOURNAL OF CANCER, Vuosikerta. 49, Nro 4, Sivut 938-945. https://doi.org/10.1016/j.ejca.2012.09.030

Emmert-Streib, F 2013, 'Structural Properties and Complexity of a New Network Class: Collatz Step Graphs', PLoS ONE, Vuosikerta. 8, Nro 2, e56461. https://doi.org/10.1371/journal.pone.0056461

Betrouni, N, Nevoux, P, Leroux, B, Colin, P, Puech, P & Mordon, S 2013, 'An anatomically realistic and adaptable prostate phantom for laser thermotherapy treatment planning', Medical Physics, Vuosikerta. 40, Nro 2, 022701. https://doi.org/10.1118/1.4788673

Poojari, C, Kukol, A & Strodel, B 2013, 'How the amyloid-β peptide and membranes affect each other: An extensive simulation study', Biochimica et Biophysica Acta: Biomembranes, Vuosikerta. 1828, Nro 2, Sivut 327-339. https://doi.org/10.1016/j.bbamem.2012.09.001

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Shaikh, SA, Li, J, Enkavi, G, Wen, PC, Huang, Z & Tajkhorshid, E 2013, 'Visualizing functional motions of membrane transporters with molecular dynamics simulations', Biochemistry, Vuosikerta. 52, Nro 4, Sivut 569-587. https://doi.org/10.1021/bi301086x

Blake, JA, Dolan, M, Drabkin, H, Hill, DP, Ni, L, Sitnikov, D, Bridges, S, Burgess, S, Buza, T, McCarthy, F, Peddinti, D, Pillai, L, Carbon, S, Dietze, H, Ireland, A, Lewis, SE, Mungall, CJ, Gaudet, P, Chisholm, RL, Fey, P, Kibbe, WA, Basu, S, Siegele, DA, McIntosh, BK, Renfro, DP, Zweifel, AE, Hu, JC, Brown, NH, Tweedie, S, Alam-Faruque, Y, Apweiler, R, Auchinchloss, A, Axelsen, K, Bely, B, Blatter, MC, Bonilla, C, Bougueleret, L, Boutet, E, Breuza, L, Bridge, A, Chan, WM, Chavali, G, Coudert, E, Dimmer, E, Estreicher, A, Famiglietti, L, Feuermann, M, Gos, A, Gruaz-Gumowski, N, Hieta, R, Hinz, U, Hulo, C, Huntley, R, James, J, Jungo, F, Keller, G, Laiho, K, Legge, D, Lemercier, P, Lieberherr, D, Magrane, M, Martin, MJ, Masson, P, Mutowo-Muellenet, P, O'Donovan, C, Pedruzzi, I, Pichler, K, Poggioli, D, Porras Millan, P, Poux, S, Rivoire, C, Roechert, B, Sawford, T, Schneider, M, Stutz, A, Sundaram, S, Tognolli, M, Xenarios, I, Foulger, R, Lomax, J, Roncaglia, P, Khodiyar, VK, Lovering, RC, Talmud, PJ, Chibucos, M, Gwinn Giglio, M, Chang, HY, Hunter, S, McAnulla, C, Mitchell, A, Sangrador, A, Stephan, R, Harris, MA, Oliver, SG, Rutherford, K, Wood, V, Bahler, J, Lock, A, Kersey, PJ, McDowall, MD, Staines, DM, Dwinell, M, Shimoyama, M, Laulederkind, S, Hayman, T, Wang, SJ, Petri, V, Lowry, T, D'Eustachio, P, Matthews, L, Balakrishnan, R, Binkley, G, Cherry, JM, Costanzo, MC, Dwight, SS, Engel, SR, Fisk, DG, Hitz, BC, Hong, EL, Karra, K, Miyasato, SR, Nash, RS, Park, J, Skrzypek, MS, Weng, S, Wong, ED, Berardini, TZ, Li, D, Huala, E, Mi, H, Thomas, PD, Chan, J, Kishore, R, Sternberg, P, Van Auken, K, Howe, D & Westerfield, M 2013, 'Gene ontology annotations and resources', Nucleic Acids Research, Vuosikerta. 41, Nro D1. https://doi.org/10.1093/nar/gks1050

Apweiler, R, Martin, MJ, O'Donovan, C, Magrane, M, Alam-Faruque, Y, Alpi, E, Antunes, R, Arganiska, J, Casanova, EB, Bely, B, Bingley, M, Bonilla, C, Britto, R, Bursteinas, B, Chan, WM, Chavali, G, Cibrian-Uhalte, E, Da Silva, A, De Giorgi, M, Dimmer, E, Fazzini, F, Gane, P, Fedotov, A, Castro, LG, Garmiri, P, Hatton-Ellis, E, Hieta, R, Huntley, R, Jacobsen, J, Jones, R, Legge, D, Liu, W, Luo, J, MacDougall, A, Mutowo, P, Nightingale, A, Orchard, S, Patient, S, Pichler, K, Poggioli, D, Pundir, S, Pureza, L, Qi, G, Rosanoff, S, Sawford, T, Sehra, H, Turner, E, Volynkin, V, Wardell, T, Watkins, X, Zellner, H, Corbett, M, Donnelly, M, Van Rensburg, P, Goujon, M, McWilliam, H, Lopez, R, Xenarios, I, Bougueleret, L, Bridge, A, Poux, S, Redaschi, N, Auchincloss, A, Axelsen, K, Bansal, P, Baratin, D, Binz, PA, Blatter, MC, Boeckmann, B, Bolleman, J, Boutet, E, Breuza, L, De Castro, E, Cerutti, L, Coudert, E, Cuche, B, Doche, M, Dornevil, D, Duvaud, S, Estreicher, A, Famiglietti, L, Feuermann, M, Gasteiger, E, Gehant, S, Gerritsen, V, Gos, A, Gruaz-Gumowski, N, Hinz, U, Hulo, C, James, J, Jungo, F, Keller, G, Lara, V, Lemercier, P, Lew, J, Lieberherr, D, Martin, X, Masson, P, Morgat, A, Neto, T, Paesano, S, Pedruzzi, I, Pilbout, S, Pozzato, M, Pruess, M, Rivoire, C, Roechert, B, Schneider, M, Sigrist, C, Sonesson, K, Staehli, S, Stutz, A, Sundaram, S, Tognolli, M, Verbregue, L, Veuthey, AL, Zerara, M, Wu, CH, Arighi, CN, Arminski, L, Chen, C, Chen, Y, Huang, H, Kukreja, A, Laiho, K, McGarvey, P, Natale, DA, Natarajan, TG, Roberts, NV, Suzek, BE, Vinayaka, CR, Wang, Q, Wang, Y, Yeh, LS, Yerramalla, MS & Zhang, J 2013, 'Update on activities at the Universal Protein Resource (UniProt) in 2013', Nucleic Acids Research, Vuosikerta. 41, Nro D1. https://doi.org/10.1093/nar/gks1068

Al Olama, AA, Kote-Jarai, Z, Schumacher, FR, Wiklund, F, Berndt, SI, Benlloch, S, Giles, GG, Severi, G, Neal, DE, Hamdy, FC, Donovan, JL, Hunter, DJ, Henderson, BE, Thun, MJ, Gaziano, M, Giovannucci, EL, Siddiq, A, Travis, RC, Cox, DG, Canzian, F, Riboli, E, Key, TJ, Andriole, G, Albanes, D, Hayes, RB, Schleutker, J, Auvinen, A, Tammela, TLJ, Weischer, M, Stanford, JL, Ostrander, EA, Cybulski, C, Lubinski, J, Thibodeau, SN, Schaid, DJ, Sorensen, KD, Batra, J, Clements, JA, Chambers, S, Aitken, J, Gardiner, RA, Maier, C, Vogel, W, Dörk, T, Brenner, H, Habuchi, T, Ingles, S, John, EM, Dickinson, JL, Cannon-Albright, L, Teixeira, MR, Kaneva, R, Zhang, HW, Lu, YJ, Park, JY, Cooney, KA, Muir, KR, Leongamornlert, DA, Saunders, E, Tymrakiewicz, M, Mahmud, N, Guy, M, Govindasami, K, O'Brien, LT, Wilkinson, RA, Hall, AL, Sawyer, EJ, Dadaev, T, Morrison, J, Dearnaley, DP, Horwich, A, Huddart, RA, Khoo, VS, Parker, CC, Van As, N, Woodhouse, CJ, Thompson, A, Dudderidge, T, Ogden, C, Cooper, CS, Lophatonanon, A, Southey, MC, Hopper, JL, English, D, Virtamo, J, Marchand, LL, Campa, D, Kaaks, R, Lindstrom, S, Diver, WR, Gapstur, S, Yeager, M, Cox, A, Stern, MC, Corral, R, Aly, M, Isaacs, W, Adolfsson, J, Xu, J, Zheng, SL, Wahlfors, T, Taari, K, Kujala, P, Klarskov, P, Nordestgaard, BG, Røder, MA, Frikke-Schmidt, R, Bojesen, SE, FitzGerald, LM, Kolb, S, Kwon, EM, Karyadi, DM, Orntoft, TF, Borre, M, Rinckleb, A, Luedeke, M, Herkommer, K, Meyer, A, Serth, JR, Marthick, JR, Patterson, B, Wokolorczyk, D, Spurdle, A, Lose, F, McDonnell, SK, Joshi, AD, Shahabi, A, Pinto, P, Santos, J, Ray, A, Sellers, TA, Lin, HY, Stephenson, RA, Teerlink, C, Muller, H, Rothenbacher, D, Tsuchiya, N, Narita, S, Cao, GW, Slavov, C, Mitev, V, Chanock, S, Gronberg, H, Haiman, CA, Kraft, P, Easton, DF & Eeles, RA 2013, 'A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease', HUMAN MOLECULAR GENETICS, Vuosikerta. 22, Nro 2, dds425, Sivut 408-415. https://doi.org/10.1093/hmg/dds425

Xu, J, Lange, EM, Lu, L, Zheng, SL, Wang, Z, Thibodeau, SN, Cannon-Albright, LA, Teerlink, CC, Camp, NJ, Johnson, AM, Zuhlke, KA, Stanford, JL, Ostrander, EA, Wiley, KE, Isaacs, SD, Walsh, PC, Maier, C, Luedeke, M, Vogel, W, Schleutker, J, Wahlfors, T, Tammela, T, Schaid, D, McDonnell, SK, Derycke, MS, Cancel-Tassin, G, Cussenot, O, Wiklund, F, Grönberg, H, Eeles, R, Easton, D, Kote-Jarai, Z, Whittemore, AS, Hsieh, CL, Giles, GG, Hopper, JL, Severi, G, Catalona, WJ, Mandal, D, Ledet, E, Foulkes, WD, Hamel, N, Mahle, L, Moller, P, Powell, I, Bailey-Wilson, JE, Carpten, JD, Seminara, D, Cooney, KA & Isaacs, WB 2013, 'HOXB13 is a susceptibility gene for prostate cancer: Results from the International Consortium for Prostate Cancer Genetics (ICPCG)', HUMAN GENETICS, Vuosikerta. 132, Nro 1, Sivut 5-14. https://doi.org/10.1007/s00439-012-1229-4

Rauhala, HE, Teppo, S, Niemelä, S & Kallioniemi, A 2013, 'Silencing of the arp2/3 complex disturbs pancreatic cancer cell migration', Anticancer Research, Vuosikerta. 33, Nro 1, Sivut 45-52.

Ikonen, L, Kerkelä, E, Metselaar, G, Stuart, MCA, De Jong, MR & Aalto-Setälä, K 2013, '2D and 3D self-assembling nanofiber hydrogels for cardiomyocyte culture', BioMed Research International, Vuosikerta. 2013, 285678. https://doi.org/10.1155/2013/285678

Simoes, RDM, Dehmer, M & Emmert-Streib, F 2013, 'B-cell lymphoma gene regulatory networks: Biological consistency among inference methods', Frontiers in Genetics, Vuosikerta. 4, Nro DEC, 00281. https://doi.org/10.3389/fgene.2013.00281

Rantanen, T, Kauttu, T, Åkerla, J, Honkanen, T, Krogerus, L, Salo, J, Paavonen, T & Oksala, N 2013, 'CIP2A expression and prognostic role in patients with esophageal adenocarcinoma', MEDICAL ONCOLOGY, Vuosikerta. 30, Nro 3, 684. https://doi.org/10.1007/s12032-013-0684-7

Toivonen, S, Ojala, M, Hyysalo, A, Ilmarinen, T, Rajala, K, Pekkanen-Mattila, M, Äänismaa, R, Lundin, K, Palgi, J, Weltner, J, Trokovic, R, Silvennoinen, O, Skottman, H, Narkilahti, S, Aalto-Setälä, K & Otonkoski, T 2013, 'Comparative analysis of targeted differentiation of human induced pluripotent stem cells (hiPSCs) and human embryonic stem cells reveals variability associated with incomplete transgene silencing in retrovirally derived hiPSCs lines', Stem Cells Translational Medicine, Vuosikerta. 2, Nro 2, Sivut 83-93. https://doi.org/10.5966/sctm.2012-0047

Kong, L, Aho, KL, Granberg, K, Roos, C & Autio, R 2013, DBComposer: An R package for integrative analysis and management of gene expression microarray data. julkaisussa 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings., 6735944, Sivut 92-93, Houston, TX, Yhdysvallat, 17/11/13. https://doi.org/10.1109/GENSIPS.2013.6735944

Patrikoski, M, Juntunen, M, Boucher, S, Campbell, A, Vemuri, MC, Mannerström, B & Miettinen, S 2013, 'Development of fully defined xeno-free culture system for the preparation and propagation of cell therapy-compliant human adipose stem cells', STEM CELL RESEARCH & THERAPY, Vuosikerta. 4, Nro 2, 27. https://doi.org/10.1186/scrt175

Kyllönen, L, Haimi, S, Mannerström, B, Huhtala, H, Rajala, KM, Skottman, H, Sándor, GK & Miettinen, S 2013, 'Effects of different serum conditions on osteogenic differentiation of human adipose stem cells in vitro', STEM CELL RESEARCH & THERAPY, Vuosikerta. 4, Nro 1, 17. https://doi.org/10.1186/scrt165

Chen, J, Eshghi, ST, Bova, GS, Li, QK, Li, X & Zhang, H 2013, 'Epithelium percentage estimation facilitates epithelial quantitative protein measurement in tissue specimens', CLINICAL PROTEOMICS, Vuosikerta. 10, Nro 1, 18. https://doi.org/10.1186/1559-0275-10-18

Alimi, NA, Bink, MCAM, Dieleman, JA, Nicolaï, M, Wubs, M, Heuvelink, E, Magan, J, Voorrips, RE, Jansen, J, Rodrigues, PC, van der Heijden, GWAM, Vercauteren, A, Vuylsteke, M, Song, Y, Glasbey, C, Barocsi, A, Lefebvre, V, Palloix, A & van Eeuwijk, FA 2013, 'Genetic and QTL analyses of yield and a set of physiological traits in pepper', EUPHYTICA, Vuosikerta. 190, Nro 2, Sivut 181-201. https://doi.org/10.1007/s10681-012-0767-0

Diban, N, Haimi, S, Bolhuis-Versteeg, L, Teixeira, S, Miettinen, S, Poot, A, Grijpma, D & Stamatialis, D 2013, 'Hollow fibers of poly(lactide-co-glycolide) and poly(ε-caprolactone) blends for vascular tissue engineering applications', Acta Biomaterialia, Vuosikerta. 9, Nro 5, Sivut 6450-6458. https://doi.org/10.1016/j.actbio.2013.01.005

Emmert-Streib, F 2013, 'Influence of the experimental design of gene expression studies on the inference of gene regulatory networks: Environmental factors', PeerJ, Vuosikerta. 2013, Nro 1, e10. https://doi.org/10.7717/peerj.10

Ylilauri, M, Mattila, E, Nurminen, EM, Käpylä, J, Niinivehmas, SP, Määttä, JA, Pentikäinen, U, Ivaska, J & Pentikäinen, OT 2013, 'Molecular mechanism of T-cell protein tyrosine phosphatase (TCPTP) activation by mitoxantrone', Biochimica et biophysica acta: proteins and proteomics, Vuosikerta. 1834, Nro 10, Sivut 1988-1997. https://doi.org/10.1016/j.bbapap.2013.07.001

Magarkar, A, Stepniewski, M, Karakas, E, Rog, T, Yliperttula, M, Urtti, A & Bunker, A 2013, Molecular modeling of the PEGylated bilayer as a model for the PEGylated liposome surface in the bloodstream. julkaisussa Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013. Vuosikerta. 2, Sivut 576-578, Washington, DC, Yhdysvallat, 12/05/13.

Jayakrishnan, R, Mathew, A, Uutela, A, Auvinen, A & Sebastian, P 2013, 'Multiple approaches and participation rate for a community based smoking cessation intervention trial in rural Kerala, India', ASIAN PACIFIC JOURNAL OF CANCER PREVENTION, Vuosikerta. 14, Nro 5, Sivut 2891-2896. https://doi.org/10.7314/APJCP.2013.14.5.2891

Rodriguez-Canales, J, Hanson, JC, Hipp, JD, Balis, UJ, Tangrea, MA, Emmert-Buck, MR & Bova, GS 2013, Optimal molecular profiling of tissue and tissue components: De fining the best processing and microdissection methods for biomedical applications. julkaisussa Pancreatic Cancer: Methods and Protocols. Vuosikerta. 980, Methods in Molecular Biology, Vuosikerta. 980, HUMANA PRESS INC, Sivut 61-120. https://doi.org/10.1007/978-1-62703-287-2_5

Emmert-Streib, F 2013, 'Personalized medicine: Has it started yet? A reconstruction of the early history', Frontiers in Genetics, Vuosikerta. 3, Nro JAN, Article 313. https://doi.org/10.3389/fgene.2012.00313

Iosifidis, A, Tefas, A & Pitas, I 2013, Person identification from actions based on Artificial Neural Networks. julkaisussa IEEE Workshop on Computational Intelligence in Biometrics and Identity Management, CIBIM. Sivut 7-13, Singapore, Singapore, 16/04/13. https://doi.org/10.1109/CIBIM.2013.6607907

Iosifidis, A, Tefas, A & Pitas, I 2013, Person identification from actions based on dynemes and discriminant learning. julkaisussa 2013 International Workshop on Biometrics and Forensics, IWBF 2013., Lisbon, Portugali, 4/04/13. https://doi.org/10.1109/IWBF.2013.6547320

Lahtinen, K, Maydannik, P, Kääriäinen, T, Seppänen, T, Cameron, DC, Johansson, P, Kraft, M & Kuusipalo, J 2013, Roll-to-roll atomic layer deposition for flexible substrates. julkaisussa TAPPI International Conference on Nanotechnology 2013. TAPPI Press, Sivut 726-739, Stockholm, Ruotsi, 24/06/13.

Jayakrishnan, R, Uutela, A, Mathew, A, Auvinen, A, Mathew, PS & Sebastian, P 2013, 'Smoking cessation intervention in Rural Kerala, India: Findings of a randomised controlled trial', ASIAN PACIFIC JOURNAL OF CANCER PREVENTION, Vuosikerta. 14, Nro 11, Sivut 6797-6802. https://doi.org/10.7314/APJCP.2013.14.11.6797

Liimatainen, V, Sariola, V & Zhou, Q 2013, Undercut edges for robust capillary self-alignment in hybrid microassembly. julkaisussa 8th Annual IEEE International Conference on Nano/Micro Engineered and Molecular Systems, IEEE NEMS 2013., 6559911, Sivut 1088-1091, Suzhou, Kiina, 7/04/13. https://doi.org/10.1109/NEMS.2013.6559911

Stepien, M, Chinga-Carrasco, G, Saarinen, JJ, Teisala, H, Tuominen, M, Aromaa, M, Haapanen, J, Kuusipalo, J, Mäkelä, JM & Toivakka, M 2013, Wear resistance of nanoparticle coatings on paperboard. julkaisussa TAPPI International Conference on Nanotechnology 2013. TAPPI Press, Sivut 821-829, Stockholm, Ruotsi, 24/06/13.

Reid, CN, Stevenson, M, Abogunrin, F, Ruddock, MW, Emmert-Streib, F, Lamont, JV & Williamson, KE 2012, 'Standardization of Diagnostic Biomarker Concentrations in Urine: The Hematuria Caveat', PLoS ONE, Vuosikerta. 7, Nro 12, e53354. https://doi.org/10.1371/journal.pone.0053354

Huuskonen, A, Lappalainen, J, Oksala, N, Santtila, M, Häkkinen, K, Kyröläinen, H & Atalay, M 2012, 'Aerobic Fitness Does Not Modify the Effect of FTO Variation on Body Composition Traits', PLoS ONE, Vuosikerta. 7, Nro 12, e51635. https://doi.org/10.1371/journal.pone.0051635

Pukkala, E, Helminen, M, Haldorsen, T, Hammar, N, Kojo, K, Linnersjö, A, Rafnsson, V, Tulinius, H, Tveten, U & Auvinen, A 2012, 'Cancer incidence among Nordic airline cabin crew', International Journal of Cancer, Vuosikerta. 131, Nro 12, Sivut 2886-2897. https://doi.org/10.1002/ijc.27551

Emmert-Streib, F, Tripathi, S & Matos Simoes, RD 2012, 'Harnessing the complexity of gene expression data from cancer: From single gene to structural pathway methods', Biology Direct, Vuosikerta. 7, 44. https://doi.org/10.1186/1745-6150-7-44

Rahmatallah, Y, Emmert-Streib, F & Glazko, G 2012, 'Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses', Bioinformatics, Vuosikerta. 28, Nro 23, Sivut 3073-3080. https://doi.org/10.1093/bioinformatics/bts579

Lisitsyna, ES, Durandin, NA, Ivanov, AA, Streltsov, SA, Susova, OY, Shtil, AA, Zhuze, AL & Kuzmin, VA 2012, 'Characteristics of complex formation between monomeric and dimeric bisbenzimidazoles and AT-containing polynucleotide', MOLECULAR BIOLOGY, Vuosikerta. 46, Nro 6, Sivut 823-827. https://doi.org/10.1134/S0026893312060131

Ojala, M, Rajala, K, Pekkanen-Mattila, M, Miettinen, M, Huhtala, H & Aalto-Setälä, K 2012, 'Culture Conditions Affect Cardiac Differentiation Potential of Human Pluripotent Stem Cells', PLoS ONE, Vuosikerta. 7, Nro 10, e48659. https://doi.org/10.1371/journal.pone.0048659

Saeger, J, Hytönen, VP, Klotzsch, E & Vogel, V 2012, 'GFP's Mechanical Intermediate States', PLoS ONE, Vuosikerta. 7, Nro 10, e46962. https://doi.org/10.1371/journal.pone.0046962

Jurkiewicz, P, Olzyńska, A, Cwiklik, L, Conte, E, Jungwirth, P, Megli, FM & Hof, M 2012, 'Biophysics of lipid bilayers containing oxidatively modified phospholipids: Insights from fluorescence and EPR experiments and from MD simulations', Biochimica et Biophysica Acta: Biomembranes, Vuosikerta. 1818, Nro 10, Sivut 2388-2402. https://doi.org/10.1016/j.bbamem.2012.05.020

Wu, GHM, Auvinen, A, Määttänen, L, Tammela, TLJ, Stenman, UH, Hakama, M, Yen, AMF & Chen, HH 2012, 'Number of screens for overdetection as an indicator of absolute risk of overdiagnosis in prostate cancer screening', International Journal of Cancer, Vuosikerta. 131, Nro 6, Sivut 1367-1375. https://doi.org/10.1002/ijc.27340

Smith, MR, Saad, F, Egerdie, B, Sieber, PR, Tammela, TLJ, Ke, C, Leder, BZ & Goessl, C 2012, 'Sarcopenia during androgen-deprivation therapy for prostate cancer', Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vuosikerta. 30, Nro 26, Sivut 3271-3276. https://doi.org/10.1200/JCO.2011.38.8850

Aavikko, M, Li, SP, Saarinen, S, Alhopuro, P, Kaasinen, E, Morgunova, E, Li, Y, Vesanen, K, Smith, MJ, Evans, DGR, Pöyhönen, M, Kiuru, A, Auvinen, A, Aaltonen, LA, Taipale, J & Vahteristo, P 2012, 'Loss of SUFU function in familial multiple meningioma', AMERICAN JOURNAL OF HUMAN GENETICS, Vuosikerta. 91, Nro 3, Sivut 520-526. https://doi.org/10.1016/j.ajhg.2012.07.015

Tammela, TLJ 2012, 'Endocrine prevention and treatment of prostate cancer', Molecular and Cellular Endocrinology, Vuosikerta. 360, Nro 1-2, Sivut 59-67. https://doi.org/10.1016/j.mce.2012.03.002

Kujala, K, Paavola, J, Lahti, A, Larsson, K, Pekkanen-Mattila, M, Viitasalo, M, Lahtinen, AM, Toivonen, L, Kontula, K, Swan, H, Laine, M, Silvennoinen, O & Aalto-Setälä, K 2012, 'Cell Model of Catecholaminergic Polymorphic Ventricular Tachycardia Reveals Early and Delayed Afterdepolarizations', PLoS ONE, Vuosikerta. 7, Nro 9, e44660. https://doi.org/10.1371/journal.pone.0044660

Saarto, T, Penttinen, HM, Sievänen, H, Kellokumpu-Lehtinen, PL, Hakamies-Blomqvist, L, Nikander, R, Huovinen, R, Luoto, R, Kautiainen, H, Järvenpää, S, Idman, I, Utriainen, M, Vehmanen, L, Jääskeläinen, AS, Elme, A, Ruohola, J, Palva, T, Vertio, H, Rautalahti, M, Fogelholm, M, Blomqvist, C & Luoma, ML 2012, 'Effectiveness of a 12-month exercise program on physical performance and quality of life of breast cancer survivors', Anticancer Research, Vuosikerta. 32, Nro 9, Sivut 3875-3884.

Nikander, R, Sievänen, H, Ojala, K, Kellokumpu-Lehtinen, PL, Palva, T, Blomqvist, C, Luoto, R & Saarto, T 2012, 'Effect of exercise on bone structural traits, physical performance and body composition in breast cancer patients - A 12-month RCT', Journal of Musculoskeletal and Neuronal Interactions, Vuosikerta. 12, Nro 3, Sivut 127-135.

Bozzini, G, Colin, P, Betrouni, N, Nevoux, P, Ouzzane, A, Puech, P, Villers, A & Mordon, S 2012, 'Photodynamic therapy in urology: What can we do now and where are we heading?', PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY, Vuosikerta. 9, Nro 3, Sivut 261-273. https://doi.org/10.1016/j.pdpdt.2012.01.005

Egerdie, RB, Saad, F, Smith, MR, Tammela, TLJ, Heracek, J, Sieber, P, Ke, C, Leder, B, Dansey, R & Goessl, C 2012, 'Responder analysis of the effects of denosumab on bone mineral density in men receiving androgen deprivation therapy for prostate cancer', PROSTATE CANCER AND PROSTATIC DISEASES, Vuosikerta. 15, Nro 3, Sivut 308-312. https://doi.org/10.1038/pcan.2012.18

Kellokumpu-Lehtinen, PL, Hjälm-Eriksson, M, Thellenberg-Karlsson, C, Åström, L, Franzen, L, Marttila, T, Seke, M, Taalikka, M & Ginman, C 2012, 'Toxicity in patients receiving adjuvant docetaxel hormonal treatment after radical radiotherapy for intermediate or high-risk prostate cancer: A preplanned safety report of the SPCG-13 trial', PROSTATE CANCER AND PROSTATIC DISEASES, Vuosikerta. 15, Nro 3, Sivut 303-307. https://doi.org/10.1038/pcan.2012.13

Liu, W, Lindberg, J, Sui, G, Luo, J, Egevad, L, Li, T, Xie, C, Wan, M, Kim, ST, Wang, Z, Turner, AR, Zhang, Z, Feng, J, Yan, Y, Sun, J, Bova, GS, Ewing, CM, Yan, G, Gielzak, M, Cramer, SD, Vessella, RL, Zheng, SL, Grönberg, H, Isaacs, WB & Xu, J 2012, 'Identification of novel CHD1-associated collaborative alterations of genomic structure and functional assessment of CHD1 in prostate cancer', Oncogene, Vuosikerta. 31, Nro 35, Sivut 3939-3948. https://doi.org/10.1038/onc.2011.554

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