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Rahmatallah, Yasir, Frank Emmert-Streib ja Galina Glazko. "Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets". Bioinformatics. 2014, 30(3). 360-368. https://doi.org/10.1093/bioinformatics/btt687

Sorkio, Anni et al. "Structure and barrier properties of human embryonic stem cell-derived retinal pigment epithelial cells are affected by extracellular matrix protein coating". Tissue Engineering Part A. 2014, 20(3-4). 622-634. https://doi.org/10.1089/ten.tea.2013.0049

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Emmert-Streib, Frank, Shu Dong Zhang ja Peter Hamilton. "Dry computational approaches for wet medical problems". Journal of Translational Medicine. 2014. 12(1). https://doi.org/10.1186/1479-5876-12-26

Ji, Junfeng et al. "Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells". Stem Cell Reports. 2014, 2(1). 44-51. https://doi.org/10.1016/j.stemcr.2013.11.004

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Emmert-Streib, Frank. "Enhancing our understanding of ways to analyze metagenomes". Frontiers in Genetics. 2014. 5(APR). https://doi.org/10.3389/fgene.2014.00108

Kannan, K. et al. "Evidence-based analysis of a novel symbiotic and epiphytic cyanobacteria associated with Azolla by cyto and molecular taxonomy". Biotechnology. 2014, 13(2). 46-53. https://doi.org/10.3923/biotech.2014.46.53

Emmert-Streib, Frank et al. "Functional and genetic analysis of the colon cancer network.". BMC Bioinformatics. 2014. 15(Suppl 6).

Giraudeau, Camille et al. "Indocyanine green: Photosensitizer or chromophore? Still a debate". CURRENT MEDICINAL CHEMISTRY. 2014, 21(16). 1871-1897.

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Kannisto, Matti et al. "Metabolic engineering of Acinetobacter baylyi ADP1 for improved growth on gluconate and glucose". Applied and Environmental Microbiology. 2014, 80(22). 7021-7027. https://doi.org/10.1128/AEM.01837-14

Guglielmetti, Simone et al. "Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain". Applied and Environmental Microbiology. 2014, 80(17). 5170-5177. https://doi.org/10.1128/AEM.00761-14

Akimova, A. V. et al. "Novel derivatives of bacteriochlorophyll a: Complex formation with albumin and the mechanism of tumor cell photodamage". DOKLADY BIOCHEMISTRY AND BIOPHYSICS. 2014, 454(1). 17-20. https://doi.org/10.1134/S1607672914010062

Vuorenpää, Hanna et al. "Novel in vitro cardiovascular constructs composed of vascular-like networks and cardiomyocytes". IN VITRO CELLULAR AND DEVELOPMENTAL BIOLOGY: ANIMAL. 2014, 50(4). 275-286. https://doi.org/10.1007/s11626-013-9703-4

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Olsen, Catharina et al. "Relevance of different prior knowledge sources for inferring gene interaction networks". Frontiers in Genetics. 2014. 5(JUN). https://doi.org/10.3389/fgene.2014.00177

Emmert-Streib, Frank, Shu Dong Zhang ja Peter Hamilton. "Report from the 2nd Summer School in Computational Biology organized by the Queen's University of Belfast". Genomics Data. 2014, 2. 37-39. https://doi.org/10.1016/j.gdata.2013.12.001

Pinon, Perrine et al. "Talin-bound NPLY motif recruits integrin-signaling adapters to regulate cell spreading and mechanosensing". Journal of Cell Biology. 2014, 205(2). 265-281. https://doi.org/10.1083/jcb.201308136

Guglielmetti, Simone et al. "TgaA, a VirB1-like component belonging to a putative type IV secretion system of Bifidobacterium bifidum MIMBb75". Applied and Environmental Microbiology. 2014, 80(17). 5161-5169. https://doi.org/10.1128/AEM.01413-14

Emmert-Streib, Frank et al. "The gene regulatory network for breast cancer: Integrated regulatory landscape of cancer hallmarks". Frontiers in Genetics. 2014. 5(FEB). https://doi.org/10.3389/fgene.2014.00015

Emmert-Streib, Frank, Matthias Dehmer ja Benjamin Haibe-Kains. "Untangling statistical and biological models to understand network inference: The need for a genomics network ontology". Frontiers in Genetics. 2014. 5(AUG). https://doi.org/10.3389/fgene.2014.00299

Dehmer, Matthias, Frank Emmert-Streib ja Shailesh Tripathi. "Large-scale evaluation of molecular descriptors by means of clustering". PLoS ONE. 2013. 8(12). https://doi.org/10.1371/journal.pone.0083956

Häkkinen, Merja R. et al. "Analysis of free, mono- and diacetylated polyamines from human urine by LC-MS/MS". JOURNAL OF CHROMATOGRAPHY B: ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES. 2013, 941. 81-89. https://doi.org/10.1016/j.jchromb.2013.10.009

Altay, Gökmen et al. "Netmes: Assessing gene network inference algorithms by network-based measures". Evolutionary Bioinformatics. 2013. 10. https://doi.org/10.4137/EBO.S13481

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Raitoharju, Emma, Niku Oksala ja Terho Lehtimäki. "MicroRNAs in the atherosclerotic plaque". Clinical Chemistry. 2013, 59(12). 1708-1721. https://doi.org/10.1373/clinchem.2013.204917

Laurila, Eeva M. ja Anne Kallioniemi. "The diverse role of miR-31 in regulating cancer associated phenotypes". Genes Chromosomes and Cancer. 2013, 52(12). 1103-1113. https://doi.org/10.1002/gcc.22107

Poojari, Chetan et al. "Membrane permeation induced by aggregates of human islet amyloid polypeptides". Biophysical Journal. 2013, 105(10). 2323-2332. https://doi.org/10.1016/j.bpj.2013.09.045

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Poojari, Chetan ja Birgit Strodel. "Stability of transmembrane amyloid β-peptide and membrane integrity tested by molecular modeling of site-specific Aβ42 mutations". PLoS ONE. 2013. 8(11). https://doi.org/10.1371/journal.pone.0078399

Kellokumpu-Lehtinen, Pirkko Liiisa et al. "Bi-weekly paclitaxel and capecitabine as a second- Or third-line treatment for advanced breast cancer: A pilot study". Anticancer Research. 2013, 33(11). 4941-4945.

Taskinen, Barbara et al. "Zebavidin - An Avidin-Like Protein from Zebrafish". PLoS ONE. 2013. 8(10). https://doi.org/10.1371/journal.pone.0077207

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Kyllönen, Laura et al. "Exogenously added BMP-6, BMP-7 and VEGF may not enhance the osteogenic differentiation of human adipose stem cells". GROWTH FACTORS. 2013, 31(5). 141-153. https://doi.org/10.3109/08977194.2013.817404

Kurttio, Päivi et al. "Fallout from the Chernobyl accident and overall cancer incidence in Finland". CANCER EPIDEMIOLOGY. 2013, 37(5). 585-592. https://doi.org/10.1016/j.canep.2013.05.006

Nurminen, Riikka et al. "Fine mapping of 11q13.5 identifies regions associated with prostate cancer and prostate cancer death". EUROPEAN JOURNAL OF CANCER. 2013, 49(15). 3335-3343. https://doi.org/10.1016/j.ejca.2013.06.006

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Lindström, Mikael S. ja Leena Latonen "The nucleolus as a stress response organelle". Proteins of the Nucleolus: Regulation, Translocation, & Biomedical Functions. Springer Netherlands. 2013, 251-273. https://doi.org/10.1007/978-94-007-5818-6_11

Högnäs, Gunilla et al. "Aneuploidy facilitates oncogenic transformation via specific genetic alterations, including Twist2 upregulation". Carcinogenesis. 2013, 34(9). 2000-2009. https://doi.org/10.1093/carcin/bgt171

Bozzini, G. et al. "Efficiency of 5-ALA mediated photodynamic therapy on hypoxic prostate cancer: A preclinical study on the dunning R3327-AT2 rat tumor model". PHOTODIAGNOSIS AND PHOTODYNAMIC THERAPY. 2013, 10(3). 296-303. https://doi.org/10.1016/j.pdpdt.2013.01.003

Rahu, Kaja et al. "Site-specific cancer risk in the Baltic cohort of Chernobyl cleanup workers, 1986-2007". EUROPEAN JOURNAL OF CANCER. 2013, 49(13). 2926-2933. https://doi.org/10.1016/j.ejca.2013.04.014

Nickerson, Michael L. et al. "Somatic alterations contributing to metastasis of a castration-resistant prostate cancer". HUMAN MUTATION. 2013, 34(9). 1231-1241. https://doi.org/10.1002/humu.22346

Dixit, Deobrat et al. "Guggulsterone sensitizes glioblastoma cells to Sonic hedgehog inhibitor SANT-1 induced apoptosis in a Ras/NFκB dependent manner". Cancer Letters. 2013, 336(2). 347-358. https://doi.org/10.1016/j.canlet.2013.03.025

Stirnemann, Guillaume et al. "Mechanisms of acceleration and retardation of water dynamics by ions". Journal of the American Chemical Society. 2013, 135(32). 11824-11831. https://doi.org/10.1021/ja405201s

Chen, Jing et al. "Identification, prioritization, and evaluation of glycoproteins for aggressive prostate cancer using quantitative glycoproteomics and antibody-based assays on tissue specimens". Proteomics. 2013, 13(15). 2268-2277. https://doi.org/10.1002/pmic.201200541

Venojärvi, Mika et al. "Stress Proteins and Heat Shock Proteins: Role in Muscle Building and Sports Nutrition". Nutrition and Enhanced Sports Performance: Muscle Building, Endurance, and Strength. Elsevier Inc. 2013, 229-235. https://doi.org/10.1016/B978-0-12-396454-0.00023-0

Loi, Sherene et al. "Somatic mutation profiling and associations with prognosis and trastuzumab benefit in early breast cancer". JOURNAL OF THE NATIONAL CANCER INSTITUTE. 2013, 105(13). 960-967. https://doi.org/10.1093/jnci/djt121

Diban, Nazely et al. "Development and characterization of poly(ε-caprolactone) hollow fiber membranes for vascular tissue engineering". Journal of Membrane Science. 2013, 438. 29-37. https://doi.org/10.1016/j.memsci.2013.03.024

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Kosola, Jussi et al. "Elevated concentration of oxidized LDL together with poor cardiorespiratory and abdominal muscle fitness predicts metabolic syndrome in young men". METABOLISM: CLINICAL AND EXPERIMENTAL. 2013, 62(7). 992-999. https://doi.org/10.1016/j.metabol.2013.01.013

Leppiniemi, Jenni et al. "The highly dynamic oligomeric structure of bradavidin II is unique among avidin proteins". PROTEIN SCIENCE. 2013, 22(7). 980-994. https://doi.org/10.1002/pro.2281

Sharma, Vivek ja Tom Misteli. "Non-coding RNAs in DNA damage and repair". FEBS Letters. 2013, 587(13). 1832-1839. https://doi.org/10.1016/j.febslet.2013.05.006

Kiiski, Heikki et al. "Healthy human CSF promotes glial differentiation of hESC-derived neural cells while retaining spontaneous activity in existing neuronal networks". Biology Open. 2013, 2(6). 605-612. https://doi.org/10.1242/bio.20134648

Ryan Geyer, R. et al. "Movement of NH3 through the human urea transporter B: A new gas channel". AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY. 2013, 304(12). 1447-1457. https://doi.org/10.1152/ajprenal.00609.2012

Mordon, S. R. et al. "Endovenous laser treatment of the great saphenous vein: Measurement of the pullback speed of the fiber by magnetic tracking". IRBM. 2013, 34(3). 252-256. https://doi.org/10.1016/j.irbm.2012.10.004

Kellokumpu-Lehtinen, Pirkko et al. "Weekly paclitaxel-An effective treatment for advanced breast cancer". Anticancer Research. 2013, 33(6). 2623-2628.

Kilpeläinen, Tuomas P. et al. "Prostate cancer mortality in the finnish randomized screening trial". JOURNAL OF THE NATIONAL CANCER INSTITUTE. 2013, 105(10). 719-725. https://doi.org/10.1093/jnci/djt038

Matos Simoes, Ricardo de, Matthias Dehmer, ja Frank Emmert-Streib. "Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information". BMC Genomics. 2013. 14(1). https://doi.org/10.1186/1471-2164-14-324

Emmert-Streib, Frank et al. "Overview of Public Cancer Databases, Resources, and Visualization Tools". Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data. Wiley-VCH. 2013, 27-40. https://doi.org/10.1002/9783527665471.ch2

Emmert-Streib, Frank ja Matthias Dehmer, toim. Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data Wiley-VCH. 2013. https://doi.org/10.1002/9783527665471

Tripathi, Shailesh, Galina V. Glazko, ja Frank Emmert-Streib. "Ensuring the statistical soundness of competitive gene set approaches: Gene filtering and genome-scale coverage are essential". Nucleic Acids Research. 2013. 41(7). https://doi.org/10.1093/nar/gkt054

Simpson, Claire L. et al. "Genetic heterogeneity in Finnish hereditary prostate cancer using ordered subset analysis". EUROPEAN JOURNAL OF HUMAN GENETICS. 2013, 21(4). 437-443. https://doi.org/10.1038/ejhg.2012.185

Eeles, Rosalind A. et al. "Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array". Nature Genetics. 2013, 45(4). 385-391. https://doi.org/10.1038/ng.2560

Elme, Anneli et al. "Obesity and physical inactivity are related to impaired physical health of breast cancer survivors". Anticancer Research. 2013, 33(4). 1595-1602.

Tossavainen, Helena et al. "Resonance assignments of the 56 kDa chimeric avidin in the biotin-bound and free forms". BIOMOLECULAR NMR ASSIGNMENTS. 2013, 7(1). 35-38. https://doi.org/10.1007/s12104-012-9371-4

Elamin, Elhaseen et al. "Fatty Acid Ethyl Esters Induce Intestinal Epithelial Barrier Dysfunction via a Reactive Oxygen Species-Dependent Mechanism in a Three-Dimensional Cell Culture Model". PLoS ONE. 2013. 8(3). https://doi.org/10.1371/journal.pone.0058561

Bruchmann, Anja et al. "Bcl-2 associated athanogene 5 (Bag5) is overexpressed in prostate cancer and inhibits ER-stress induced apoptosis". BMC Cancer. 2013. 13. https://doi.org/10.1186/1471-2407-13-96

Veitonmäki, Thea et al. "Use of aspirin, but not other non-steroidal anti-inflammatory drugs is associated with decreased prostate cancer risk at the population level". EUROPEAN JOURNAL OF CANCER. 2013, 49(4). 938-945. https://doi.org/10.1016/j.ejca.2012.09.030

Emmert-Streib, Frank. "Structural Properties and Complexity of a New Network Class: Collatz Step Graphs". PLoS ONE. 2013. 8(2). https://doi.org/10.1371/journal.pone.0056461

Betrouni, N. et al. "An anatomically realistic and adaptable prostate phantom for laser thermotherapy treatment planning". Medical Physics. 2013. 40(2). https://doi.org/10.1118/1.4788673

Poojari, Chetan, Andreas Kukol ja Birgit Strodel. "How the amyloid-β peptide and membranes affect each other: An extensive simulation study". Biochimica et Biophysica Acta: Biomembranes. 2013, 1828(2). 327-339. https://doi.org/10.1016/j.bbamem.2012.09.001

Betrouni, N. et al. "Image-guided laser therapies for prostate cancer". IRBM. 2013, 34(1). 28-32. https://doi.org/10.1016/j.irbm.2012.12.006

Shaikh, Saher A. et al. "Visualizing functional motions of membrane transporters with molecular dynamics simulations". Biochemistry. 2013, 52(4). 569-587. https://doi.org/10.1021/bi301086x

Blake, J. A. et al. "Gene ontology annotations and resources". Nucleic Acids Research. 2013. 41(D1). https://doi.org/10.1093/nar/gks1050

Apweiler, Rolf et al. "Update on activities at the Universal Protein Resource (UniProt) in 2013". Nucleic Acids Research. 2013. 41(D1). https://doi.org/10.1093/nar/gks1068

Al Olama, Ali Amin et al. "A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease". HUMAN MOLECULAR GENETICS. 2013, 22(2). 408-415. https://doi.org/10.1093/hmg/dds425

Xu, Jianfeng et al. "HOXB13 is a susceptibility gene for prostate cancer: Results from the International Consortium for Prostate Cancer Genetics (ICPCG)". HUMAN GENETICS. 2013, 132(1). 5-14. https://doi.org/10.1007/s00439-012-1229-4

Rauhala, Hanna E. et al. "Silencing of the arp2/3 complex disturbs pancreatic cancer cell migration". Anticancer Research. 2013, 33(1). 45-52.

Ikonen, Liisa et al. "2D and 3D self-assembling nanofiber hydrogels for cardiomyocyte culture". BioMed Research International. 2013. 2013. https://doi.org/10.1155/2013/285678

Simoes, Ricardo de Matos, Matthias Dehmer ja Frank Emmert-Streib. "B-cell lymphoma gene regulatory networks: Biological consistency among inference methods". Frontiers in Genetics. 2013. 4(DEC). https://doi.org/10.3389/fgene.2013.00281

Rantanen, Tuomo et al. "CIP2A expression and prognostic role in patients with esophageal adenocarcinoma". MEDICAL ONCOLOGY. 2013. 30(3). https://doi.org/10.1007/s12032-013-0684-7

Toivonen, Sanna et al. "Comparative analysis of targeted differentiation of human induced pluripotent stem cells (hiPSCs) and human embryonic stem cells reveals variability associated with incomplete transgene silencing in retrovirally derived hiPSCs lines". Stem Cells Translational Medicine. 2013, 2(2). 83-93. https://doi.org/10.5966/sctm.2012-0047

Kong, Lingjia et al. "DBComposer: An R package for integrative analysis and management of gene expression microarray data". 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings. 2013, 92-93. https://doi.org/10.1109/GENSIPS.2013.6735944

Patrikoski, Mimmi et al. "Development of fully defined xeno-free culture system for the preparation and propagation of cell therapy-compliant human adipose stem cells". STEM CELL RESEARCH & THERAPY. 2013. 4(2). https://doi.org/10.1186/scrt175

Kyllönen, Laura et al. "Effects of different serum conditions on osteogenic differentiation of human adipose stem cells in vitro". STEM CELL RESEARCH & THERAPY. 2013. 4(1). https://doi.org/10.1186/scrt165

Chen, Jing et al. "Epithelium percentage estimation facilitates epithelial quantitative protein measurement in tissue specimens". CLINICAL PROTEOMICS. 2013. 10(1). https://doi.org/10.1186/1559-0275-10-18

Alimi, N. A. et al. "Genetic and QTL analyses of yield and a set of physiological traits in pepper". EUPHYTICA. 2013, 190(2). 181-201. https://doi.org/10.1007/s10681-012-0767-0

Diban, Nazely et al. "Hollow fibers of poly(lactide-co-glycolide) and poly(ε-caprolactone) blends for vascular tissue engineering applications". Acta Biomaterialia. 2013, 9(5). 6450-6458. https://doi.org/10.1016/j.actbio.2013.01.005

Emmert-Streib, Frank. "Influence of the experimental design of gene expression studies on the inference of gene regulatory networks: Environmental factors". PeerJ. 2013. 2013(1). https://doi.org/10.7717/peerj.10

Ylilauri, Mikko et al. "Molecular mechanism of T-cell protein tyrosine phosphatase (TCPTP) activation by mitoxantrone". Biochimica et biophysica acta: proteins and proteomics. 2013, 1834(10). 1988-1997. https://doi.org/10.1016/j.bbapap.2013.07.001

Magarkar, Aniket et al. "Molecular modeling of the PEGylated bilayer as a model for the PEGylated liposome surface in the bloodstream". Technical Proceedings of the 2013 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2013. 2013, 576-578.

Jayakrishnan, Radhakrishnan et al. "Multiple approaches and participation rate for a community based smoking cessation intervention trial in rural Kerala, India". ASIAN PACIFIC JOURNAL OF CANCER PREVENTION. 2013, 14(5). 2891-2896. https://doi.org/10.7314/APJCP.2013.14.5.2891

Rodriguez-Canales, Jaime et al. "Optimal molecular profiling of tissue and tissue components: De fining the best processing and microdissection methods for biomedical applications". Pancreatic Cancer: Methods and Protocols. Methods in Molecular Biology. HUMANA PRESS INC. 2013, 61-120. https://doi.org/10.1007/978-1-62703-287-2_5

Emmert-Streib, Frank. "Personalized medicine: Has it started yet? A reconstruction of the early history". Frontiers in Genetics. 2013. 3(JAN). https://doi.org/10.3389/fgene.2012.00313

Iosifidis, Alexandros, Anastasios Tefas ja Ioannis Pitas "Person identification from actions based on Artificial Neural Networks". IEEE Workshop on Computational Intelligence in Biometrics and Identity Management, CIBIM. 2013, 7-13. https://doi.org/10.1109/CIBIM.2013.6607907

Iosifidis, Alexandros, Anastasios Tefas ja Ioannis Pitas "Person identification from actions based on dynemes and discriminant learning". 2013 International Workshop on Biometrics and Forensics, IWBF 2013. 2013. https://doi.org/10.1109/IWBF.2013.6547320

Lahtinen, K. et al. "Roll-to-roll atomic layer deposition for flexible substrates". TAPPI International Conference on Nanotechnology 2013. TAPPI Press. 2013, 726-739.

Jayakrishnan, Radhakrishnan et al. "Smoking cessation intervention in Rural Kerala, India: Findings of a randomised controlled trial". ASIAN PACIFIC JOURNAL OF CANCER PREVENTION. 2013, 14(11). 6797-6802. https://doi.org/10.7314/APJCP.2013.14.11.6797

Liimatainen, Ville, Veikko Sariola ja Quan Zhou "Undercut edges for robust capillary self-alignment in hybrid microassembly". 8th Annual IEEE International Conference on Nano/Micro Engineered and Molecular Systems, IEEE NEMS 2013. 2013, 1088-1091. https://doi.org/10.1109/NEMS.2013.6559911

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