Haukkanen P, Mattila M, Mäntysalo J. Studying the inertias of LCM matrices and revisiting the Bourque-Ligh conjecture. Journal of Combinatorial Theory. Series A. 2020 huhti 1;171. 105161. https://doi.org/10.1016/j.jcta.2019.105161

Li M, Alhussein O, Sofotasios PC, Muhaidat S, Yoo PD, Liang J et al. Censor-Based Cooperative Multi-Antenna Spectrum Sensing with Imperfect Reporting Channels. IEEE Transactions on Sustainable Computing. 2020;5(1):48-60. https://doi.org/10.1109/TSUSC.2019.2896667

Nanni L, Maguolo G, Paci M. Data augmentation approaches for improving animal audio classification. Ecological Informatics. 2020;57. 101084. https://doi.org/10.1016/j.ecoinf.2020.101084

Goranko V, Kuusisto A, Rönnholm R. Game-theoretic semantics for ATL+ with applications to model checking. Information and Computation. 2020. 104554. https://doi.org/10.1016/j.ic.2020.104554

Hella LT, Vilander MS. Formula size games for modal logic and mu-calculus. JOURNAL OF LOGIC AND COMPUTATION. 2019 joulu 13. exz025. https://doi.org/10.1093/logcom/exz025

Heljakka K, Ihamaki P, Tuomi P, Saarikoski P. Gamified coding: Toy robots and playful learning in early education. julkaisussa Proceedings - 6th Annual Conference on Computational Science and Computational Intelligence, CSCI 2019. IEEE. 2019. s. 800-805. 9071010 https://doi.org/10.1109/CSCI49370.2019.00152

Qian Y, Chen K, Yu H. Fast fourier color constancy and grayness index for ISPA illumination estimation challenge. julkaisussa Loncaric S, Bregovic R, Carli M, Subasic M, toimittajat, ISPA 2019 - 11th International Symposium on Image and Signal Processing and Analysis. IEEE. 2019. s. 352-354. (International Symposium on Image and Signal Processing and Analysis, ISPA). https://doi.org/10.1109/ISPA.2019.8868451

Vilander M, Lück M. On the Succinctness of Atoms of Dependency. Logical Methods in Computer Science. 2019 elo 20;15(3):17:1-17:28.

Robertsén F, Mattila K, Westerholm J. High-performance SIMD implementation of the lattice-Boltzmann method on the Xeon Phi processor. Concurrency Computation. 2019 heinä 10;31(13). e5072. https://doi.org/10.1002/cpe.5072

Javanainen M, Enkavi G, Guixà-Gonzaléz R, Kulig W, Martinez-Seara H, Levental I et al. Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions. PLoS Computational Biology. 2019 touko 1;15(5). e1007033. https://doi.org/10.1371/journal.pcbi.1007033

De Biasi M, Lauri J. On the complexity of restoring corrupted colorings. Journal of Combinatorial Optimization. 2019 touko;37(4):1150-1169. https://doi.org/10.1007/s10878-018-0342-2

Stockrahm A, Lahtinen V, Kangas JJJ, Kotiuga PR. Cuts for 3-D magnetic scalar potentials: Visualizing unintuitive surfaces arising from trivial knots. Computers and Mathematics with Applications. 2019. https://doi.org/10.1016/j.camwa.2019.05.023

Kuusisto A, Reiter F. Emptiness problems for distributed automata. Information and Computation. 2019. 104503. https://doi.org/10.1016/j.ic.2019.104503

Kuva J, Voutilainen M, Mattila K. Modeling mass transfer in fracture flows with the time domain-random walk method. COMPUTATIONAL GEOSCIENCES. 2019. https://doi.org/10.1007/s10596-019-09852-5

Martins L, Neeli-Venkata R, Oliveira SMD, Häkkinen A, Ribeiro AS, Fonseca JM. SCIP: a single-cell image processor toolbox. Bioinformatics. 2018 joulu 15;34(24):4318-4320. https://doi.org/10.1093/bioinformatics/bty505

Pantsar T, Rissanen S, Dauch D, Laitinen T, Vattulainen I, Poso A. Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling. PLoS Computational Biology. 2018 syys 10;14(9). e1006458. https://doi.org/10.1371/journal.pcbi.1006458

Petrov V, Moltchanov D, Koucheryavy Y, Jornet JM. The effect of small-scale mobility on terahertz band communications. julkaisussa Proceedings of the 5th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2018. ACM. 2018 https://doi.org/10.1145/3233188.3242902

Adonias GL, Barros MT, Doyle L, Balasubramaniam S. Utilising EEG signals for modulating neural molecular communications. julkaisussa Proceedings of the 5th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2018. Association for Computing Machinery, Inc. 2018 https://doi.org/10.1145/3233188.3236333

Kartasalo K, Latonen L, Vihinen J, Visakorpi T, Nykter M, Ruusuvuori P. Comparative analysis of tissue reconstruction algorithms for 3D histology. Bioinformatics. 2018 syys 1;34(17):3013-3021. https://doi.org/10.1093/bioinformatics/bty210

Eriksson SL, Orelma H, Vieira N. Hypermonogenic Functions of Two Vector Variables. Complex Analysis and Operator Theory. 2018;12(2):555–570. https://doi.org/10.1007/s11785-017-0728-7

Ito I, Egiazarian K. Full search equivalent fast block matching using orthonormal tree-structured haar transform. julkaisussa ISPA 2017 - 10th International Symposium on Image and Signal Processing and Analysis. IEEE COMPUTER SOCIETY PRESS. 2017. s. 177-182 https://doi.org/10.1109/ISPA.2017.8073591

Enkavi G, Mikkolainen H, Güngör B, Ikonen E, Vattulainen I. Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin. PLoS Computational Biology. 2017 loka 1;13(10). e1005831. https://doi.org/10.1371/journal.pcbi.1005831

Leppänen L, Leinonen J, Ihantola P, Hellas A. Predicting academic success based on learning material usage. julkaisussa SIGITE 2017 - Proceedings of the 18th Annual Conference on Information Technology Education. ACM. 2017. s. 13-18 https://doi.org/10.1145/3125659.3125695

Leinonen J, Leppänen L, Ihantola P, Hellas A. Comparison of time metrics in programming. julkaisussa ICER 2017 - Proceedings of the 2017 ACM Conference on International Computing Education Research. ACM. 2017. s. 200-208 https://doi.org/10.1145/3105726.3106181

Vuorio J, Vattulainen I, Martinez-Seara H. Atomistic fingerprint of hyaluronan–CD44 binding. PLoS Computational Biology. 2017 heinä 1;13(7). e1005663. https://doi.org/10.1371/journal.pcbi.1005663

Masek P, Mokrov E, Pyattaev A, Zeman K, Ponomarenko-Timofeev A, Samuylov A et al. Experimental evaluation of dynamic licensed shared access operation in live 3GPP LTE system. julkaisussa 2016 IEEE Global Communications Conference (GLOBECOM). IEEE. 2017 https://doi.org/10.1109/GLOCOM.2016.7841826

Siiskonen A, Priimägi A. Benchmarking DFT methods with small basis sets for the calculation of halogen-bond strengths. Journal of Molecular Modeling. 2017 helmi 1;23(2). 50. https://doi.org/10.1007/s00894-017-3212-4

Orelma H, Vieira N. Homogeneous (α,k)-Polynomial Solutions of the Fractional Riesz System in Hyperbolic Space. Complex Analysis and Operator Theory. 2017;11(5):1253–1267. https://doi.org/10.1007/s11785-017-0666-4

Stupnikov A, Tripathi S, De Matos Simoes R, McArt D, Salto-Tellez M, Glazko G et al. SamExploreR: Exploring reproducibility and robustness of RNA-seq results based on SAM files. Bioinformatics. 2016 marras 1;32(21):3345-3347. https://doi.org/10.1093/bioinformatics/btw475

Gupta JP, Menon K, Kärkkäinen H, Huhtamäki J, Mukkamala RR, Hussain A et al. Identifying weak ties from publicly available social media data in an event. julkaisussa AcademicMindtrek '16 Proceedings of the 20th International Academic Mindtrek Conference. ACM. 2016. s. 11-19 https://doi.org/10.1145/2994310.2994354

Devillers R, Valmari A, Penczek W. Application and theory of Petri nets and other models of concurrency: Special issue of selected papers from Petri Nets 2015. Fundamenta Informaticae. 2016 syys 13;146(1):v-vi. https://doi.org/10.3233/FI-2016-1373

Häkkinen A, Ribeiro AS. Characterizing rate limiting steps in transcription from RNA production times in live cells. Bioinformatics. 2016 touko 1;32(9):1346-1352. https://doi.org/10.1093/bioinformatics/btv744

Piipponen A, Valmari A. Constructing Minimal Coverability Sets. Fundamenta Informaticae. 2016 maalis 4;143(3-4):393-414. https://doi.org/10.3233/FI-2016-1319

Park Y, Alam MH, Ryu WJ, Lee S. BL-LDA: Bringing bigram to supervised topic model. julkaisussa Proceedings - 2015 International Conference on Computational Science and Computational Intelligence, CSCI 2015. Institute of Electrical and Electronics Engineers Inc. 2016. s. 83-88. 7424068 https://doi.org/10.1109/CSCI.2015.146

Hosseinzadeh S, Hyrynsalmi S, Conti M, Leppänen V. Security and privacy in cloud computing via obfuscation and diversification: A survey. julkaisussa Proceedings - IEEE 7th International Conference on Cloud Computing Technology and Science, CloudCom 2015. Institute of Electrical and Electronics Engineers Inc. 2016. s. 529-535 https://doi.org/10.1109/CloudCom.2015.29

Canelas P, Martins L, Mora A, S. Ribeiro A, Fonseca J. An image generator platform to improve cell tracking algorithms simulation of objects of various morphologies, kinetics and clustering. julkaisussa SIMULTECH 2016 - Proceedings of the 6th International Conference on Simulation and Modeling Methodologies, Technologies and Applications. SCITEPRESS. 2016. s. 44-55

Eriksson S-L, Orelma H. On k-Hypermonogenic Functions and Their Mean Value Properties. Complex Analysis and Operator Theory. 2016;10(2):311-325. https://doi.org/10.1007/s11785-015-0445-z

Martin F, Singh D, Belahcen A, Rasilo P, Haavisto A, Arkkio A. Analytical model for magnetic anisotropy of non-oriented steel sheets. COMPEL: The International Journal for Computation and Mathematics in Electrical and Electronic Engineering. 2015 syys 7;34(5):1475-1488. https://doi.org/10.1108/COMPEL-02-2015-0076

Shah SB, Rasilo P, Belahcen A, Arkkio A. Estimation of additional losses due to random contacts at the edges of stator of an electrical machine. COMPEL: The International Journal for Computation and Mathematics in Electrical and Electronic Engineering. 2015 syys 7;34(5):1501-1510. https://doi.org/10.1108/COMPEL-02-2015-0083

Ruohonen J, Hyrynsalmi S, Leppänen V. Software evolution and time series volatility: An empirical exploration. julkaisussa 14th International Workshop on Principles of Software Evolution, IWPSE 2015 - Proceedings. Vuosikerta 30-Aug-2015. Institute of Electrical and Electronics Engineers Inc. 2015. s. 56-65 https://doi.org/10.1145/2804360.2804367

Ahmadi R, Leino KRM, Nummenmaa J. Automatic verification of Dafny programs with traits. julkaisussa Proceedings for the 17th Workshop on Formal Techniques for Java-like Programs, FTfJP 2015: co-located with ECOOP 2015. Association for Computing Machinery, Inc. 2015. a4 https://doi.org/10.1145/2786536.2786542

Rodrigues PC, Monteiro A, Lourenço VM. A robust AMMI model for the analysis of genotype-by-environment data. Bioinformatics. 2015 heinä 1;32(1):58-66. https://doi.org/10.1093/bioinformatics/btv533

Liang Y, Ma L, Wang J, Wang G. Multistep reactions of water with small Pdn clusters: A first principles study. Journal of Theoretical and Computational Chemistry. 2015 touko 1;14(3). 1550017. https://doi.org/10.1142/S0219633615500170

Moradi E, Koski K, Hasani M, Rahmat-Samii Y, Ukkonen L. Antenna design considerations for far field and near field wireless body-centric systems. julkaisussa ICCEM 2015 - 2015 IEEE International Conference on Computational Electromagnetics. The Institute of Electrical and Electronics Engineers, Inc. 2015. s. 59-60. 7052555 https://doi.org/10.1109/COMPEM.2015.7052555

Mygdalis V, Iosifidis A, Tefas A, Pitas I. Video summarization based on Subclass Support Vector Data Description. julkaisussa IEEE SSCI 2014 - 2014 IEEE Symposium Series on Computational Intelligence - CIES 2014: 2014 IEEE Symposium on Computational Intelligence for Engineering Solutions, Proceedings. The Institute of Electrical and Electronics Engineers, Inc. 2015. s. 183-187 https://doi.org/10.1109/CIES.2014.7011849

Häkkinen A, Ribeiro AS. Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data. Bioinformatics. 2015 tammi 1;31(1):69-75. https://doi.org/10.1093/bioinformatics/btu592

Belahcen A, Rasilo P, Nguyen TT, Clénet S. Uncertainty propagation of iron loss from characterization measurements to computation of electrical machines. COMPEL: The International Journal for Computation and Mathematics in Electrical and Electronic Engineering. 2015;34(3):624-636. https://doi.org/10.1108/COMPEL-10-2014-0271

Wang J, Ma L, Liang Y, Gao M, Wang G. Density functional theory study of transition metals doped B80 fullerene. Journal of Theoretical and Computational Chemistry. 2014 syys 22;13(6). 1450050. https://doi.org/10.1142/S0219633614500503

Tripathi S, Dehmer M, Emmert-Streib F. NetBioV: An R package for visualizing large network data in biology and medicine. Bioinformatics. 2014 huhti 2;30(19):2834-2836. https://doi.org/10.1093/bioinformatics/btu384

Rahmatallah Y, Emmert-Streib F, Glazko G. Gene Sets Net Correlations Analysis (GSNCA): A multivariate differential coexpression test for gene sets. Bioinformatics. 2014 helmi 1;30(3):360-368. https://doi.org/10.1093/bioinformatics/btt687

Iosifidis A, Tefas A, Pitas I. Exploiting local class information in extreme learning machine. julkaisussa NCTA 2014 - Proceedings of the International Conference on Neural Computation Theory and Applications. INSTICC PRESS. 2014. s. 49-55

Kong L, Aho KL, Granberg K, Roos C, Autio R. DBComposer: An R package for integrative analysis and management of gene expression microarray data. julkaisussa 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings. 2013. s. 92-93. 6735944 https://doi.org/10.1109/GENSIPS.2013.6735944

Belahcen A, Fonteyn K, Kouhia R, Rasilo P, Arkkio A. Magnetomechanical coupled FE simulations of rotating electrical machines. COMPEL: The International Journal for Computation and Mathematics in Electrical and Electronic Engineering. 2013;32(5):1484-1499. 17095978. https://doi.org/10.1108/COMPEL-04-2013-0109

Iosifidis A, Tefas A, Pitas I. Multidimensional sequence classification based on fuzzy distances and discriminant analysis. IEEE Transactions on Knowledge and Data Engineering. 2013;25(11):2564-2575. https://doi.org/10.1109/TKDE.2012.223

Iosifidis A, Tefas A, Pitas I. Person identification from actions based on Artificial Neural Networks. julkaisussa IEEE Workshop on Computational Intelligence in Biometrics and Identity Management, CIBIM. 2013. s. 7-13 https://doi.org/10.1109/CIBIM.2013.6607907

Rahmatallah Y, Emmert-Streib F, Glazko G. Gene set analysis for self-contained tests: Complex null and specific alternative hypotheses. Bioinformatics. 2012 joulu;28(23):3073-3080. https://doi.org/10.1093/bioinformatics/bts579

Ma L, Atta-Fynn R, Ray AK. Elemental and mixed actinide dioxides: An ab initio study. Journal of Theoretical and Computational Chemistry. 2012 kesä;11(3):611-629. https://doi.org/10.1142/S021963361250040X

Karavirta V, Helminen J, Ihantola P. A Mobile learning application for parsons problems with automatic feedback. julkaisussa Proceedings - 12th Koli Calling International Conference on Computing Education Research, Koli Calling 2012. 2012. s. 11-18 https://doi.org/10.1145/2401796.2401798

Phan DH, Suzuki J, Carroll R, Balasubramaniam S, Donnelly W, Botvich D. Evolutionary multiobjective optimization for Green clouds. julkaisussa GECCO'12 - Proceedings of the 14th International Conference on Genetic and Evolutionary Computation Companion. 2012. s. 19-26 https://doi.org/10.1145/2330784.2330788

Karamanakos P, Papafotiou G, Manias SN. Model predictive control of the interleaved dc-dc boost converter. julkaisussa 15th International Conference on System Theory, Control and Computing, ICSTCC 2011. 2011

Yu G, Zhang B, Bova GS, Xu J, Shih IM, Wang Y. BACOM: In silico detection of genomic deletion types and correction of normal cell contamination in copy number data. Bioinformatics. 2011 kesä;27(11):1473-1480. btr183. https://doi.org/10.1093/bioinformatics/btr183

Emmert-Streib F, Glazko GV. Pathway analysis of expression data: Deciphering functional building blocks of complex diseases. PLoS Computational Biology. 2011 touko;7(5). e1002053. https://doi.org/10.1371/journal.pcbi.1002053

Wu HH, Shen CC, Sane N, Plishker W, Bhattacharyya SS. A model-based schedule representation for heterogeneous mapping of dataflow graphs. julkaisussa 2011 IEEE International Symposium on Parallel and Distributed Processing, Workshops and Phd Forum, IPDPSW 2011. 2011. s. 70-81. 6008822 https://doi.org/10.1109/IPDPS.2011.128

Bulling A, Duchowski AT, Majaranta P. PETMEI 2011: The 1st international workshop on pervasive eye tracking and mobile eye-based interaction. julkaisussa UbiComp'11 - Proceedings of the 2011 ACM Conference on Ubiquitous Computing. 2011. s. 627-628 https://doi.org/10.1145/2030112.2030248

Khan SA, Saastamoinen J, Tiensyrjä K, Nurmi J. System level performance simulation of distributed GENESYS applications on multi-core platforms. julkaisussa Proceedings - IEEE 9th International Conference on Dependable, Autonomic and Secure Computing, DASC 2011. 2011. s. 313-320 https://doi.org/10.1109/DASC.2011.70

Altay G, Emmert-Streib F. Revealing differences in gene network inference algorithms on the network level by ensemble methods. Bioinformatics. 2010 touko 25;26(14):1738-1744. btq259. https://doi.org/10.1093/bioinformatics/btq259

Brumley BB, Jarvinen KU. Conversion algorithms and implementations for koblitz curve cryptography. IEEE Transactions on Computers. 2010 tammi 4;59(1):81-92. 5255226. https://doi.org/10.1109/TC.2009.132

Glazko GV, Emmert-Streib F. Unite and conquer: Univariate and multivariate approaches for finding differentially expressed gene sets. Bioinformatics. 2009 syys;25(18):2348-2354. https://doi.org/10.1093/bioinformatics/btp406

Koskinen JA, Kelo TO. Pure e-learning course in information security. julkaisussa Elci A, toimittaja, Proceedings of SIN'09, Second International Conference on Security of Information and Networks, Famagusta, North Cypros, October 6-10, 2009. 2009. s. 8-13. 1626200 https://doi.org/10.1145/1626195.1626200

Emmert-Streib F, Dehmer M. Robustness in scale-free networks: Comparing directed and undirected networks. International Journal of Modern Physics C. 2008 touko;19(5):717-726. https://doi.org/10.1142/S0129183108012510

Emmert-Streib F, Dehmer M. Nonlinear time series prediction based on a power-law noise model. International Journal of Modern Physics C. 2007 joulu;18(12):1839-1852. https://doi.org/10.1142/S0129183107011765

Emmert-Streib F, Dehmer M. Global information processing in gene networks: Fault tolerance. julkaisussa Proceedings of the Bio-Inspired Models of Network, Information, and Computing Systems, Bionetics 2007. 2007. s. 326-329. 4610138 https://doi.org/10.1109/BIMNICS.2007.4610138

Emmert-Streib F. Algorithmic computation of knot polynomials of secondary structure elements of proteins. Journal of Computational Biology. 2006 loka 1;13(8):1503-1512. https://doi.org/10.1089/cmb.2006.13.1503

Emmert-Streib F. A heterosynaptic learning rule for neural networks. International Journal of Modern Physics C. 2006 loka;17(10):1501-1520. https://doi.org/10.1142/S0129183106009916

Emmert-Streib F. Stochastic Sznajd Model in open community. International Journal of Modern Physics C. 2005 marras;16(11):1693-1699. https://doi.org/10.1142/S0129183105008217

Koskinen JA. Non-injective knapsack public-key cryptosystems. Theoretical Computer Science. 2001;255(1-2):401-422. https://doi.org/10.1016/S0304-3975(99)00297-2