TUTCRIS - Tampereen teknillinen yliopisto



  1. A1 Alkuperäisartikkeli
  2. Julkaistu

    Improved estimates of partial volume coefficients from noisy brain MRI using spatial context

    Manjon, J. V., Tohka, J. & Robles, M., 2010, julkaisussa : NeuroImage. 53, 2, s. 480-490


  3. Julkaistu

    Using domain knowledge to boost software architecture evaluation

    Eloranta, V-P. & Koskimies, K., 2010, julkaisussa : Lecture Notes in Computer Science. 6285, s. 319-326


  4. Julkaistu

    Dynamical effects of transcriptional pause-prone sites

    S. Ribeiro, A., Häkkinen, A., Healy, S. & Yli-Harja, O., 2010, julkaisussa : Computational Biology and Chemistry. 34, 3, s. 143-148


  5. Julkaistu

    Image-based feedback control for real-time sorting of microspheres in a microfluidic device

    Munson, M. S., Spotts, J. M., Niemistö, A., Selinummi, J., Kralj, J. G., Salit, M. L. & Ozinsky, A., 2010, julkaisussa : Lab on a Chip. 10, 18, s. 2402-2410


  6. Julkaistu

    Knowledge-oriented software engineering process in a multi-cultural context

    Jaakkola, H., Heimburger, A. & Linna, P., 2010, julkaisussa : Software Quality Journal. 18, 2, s. 299-319


  7. A guide for medical information searches of bibliographic databases - psychiatric research as an example

    Löhönen, J., Isohanni, M., Nieminen, P. & Miettunen, J., 15 lokakuuta 2009, julkaisussa : INTERNATIONAL JOURNAL OF CIRCUMPOLAR HEALTH. 68, 4, s. 394-404 11 Sivumäärä


  8. Julkaistu

    Dynamic analysis of MAPK signaling using a high-throughput microfluidic single-cell imaging platform

    Taylor, R. J., Falconnet, D., Niemistö, A., Ramsey, S. A., Prinz, S., Shmulevich, I., Galitski, T. & Hansen, C. L., 2009, julkaisussa : Proceedings of the National Academy of Sciences of the United States of America. 106, 10, s. 3758-3763


  9. Julkaistu

    Ballistocardiographic responses to dynamic facial displays of emotion while sitting on the EMFi chair

    Anttonen, J., Surakkka, V. & Koivuluoma, M., 2009, julkaisussa : Journal of Media Psychology. 21, 2, s. 69-84


  10. Julkaistu

    Variability of the distribution of differentiation pathway choices regulated by a multipotent delayed stochastic switch

    S. Ribeiro, A., Dai, X. & Yli-Harja, O., 2009, julkaisussa : Journal of Theoretical Biology. 260, 1, s. 66-76 11 Sivumäärä


  11. Julkaistu

    Perceptual dominant color extraction by multidimensional particle swarm optimization

    Kiranyaz, S., Uhlmann, S., Ince, T. & Gabbouj, M., 2009, julkaisussa : Eurasip Journal on Advances in Signal Processing. 2009, 451638, s. 1-13 13 Sivumäärä


  12. Julkaistu

    A pattern-based approach to manage model references

    Systä, T. & Jiang, J., 2009, julkaisussa : EASST Electronic Communications. 21, s. 10


  13. Julkaistu

    NF-Y influences directionality of transcription from the bidirectional Mrps 12/Sarsm promoter in both mouse and human cells

    Zanotto, E., Häkkinen, A., Teku, G., Shen, B. S., Ribeiro, A. & Jacobs, H. T., 2009, julkaisussa : Biochimica et Biophysica Acta: Gene Regulatory Mechanisms. 1789, 5, s. 432-442


  14. Increased expression of androgen receptor sensitizes prostate cancer cells to low levels of androgens

    Waltering, K. K., Helenius, M. A., Sahu, B., Manni, V., Linja, M. J., Jänne, O. A. & Visakorpi, T., 2009, julkaisussa : Cancer Research. 69, 20, s. 8141-8149


  15. Julkaistu

    Fuzzy joint encoding and statistical multiplexing of multiple video sources with independent quality of services for streaming over DVB-H

    Rezaei, M., Bouazizi, I. & Gabbouj, M., 2009, julkaisussa : International Journal of Innovative Computing Information and Control. 5, 7, s. 1837-1850


  16. Julkaistu

    A service science perspective on the design of social media activities

    Multisilta, J., 2009, julkaisussa : International Journal of Web Engineering and Technology. 5, 3, s. 327-342


  17. Julkaistu

    Delayed stochastic model of transcription at the single nucleotide level

    S. Ribeiro, A., Smolander, O-P., Rajala, T., Häkkinen, A. & Yli-Harja, O., 2009, julkaisussa : Journal of Computational Biology. 16, 4, s. 539-553


  18. Julkaistu

    Node-based architecture for lightweight middleware

    Hartikainen, V-M., Vulli, M. & Järvinen, H-M., 2009, julkaisussa : Annales Universitatis Scientiarum Budapestinensis de Rolando Eötvös Nominatae, Sectio Computatorica. s. 191-200


  19. Julkaistu

    Postgraduate studies in the field of HCI

    Vainio, T., Surakka, V., Raisamo, R., Räihä, K-J., Isokoski, P., Väänänen-Vainio-Mattila, K. & Kujala, S., 2009, julkaisussa : Lecture Notes in Computer Science. 5727, s. 928-929


  20. Julkaistu

    Cross-cultural software engineering

    Jaakkola, H. & Heimburger, A., 2009, julkaisussa : Informatologia. 42, 4, s. 256-264


  21. Julkaistu

    Genetic aberrations in soft tissue leiomyosarcoma

    Yang, J., Du, X., Chen, K., Ylipää, A., Lazar, A. J. F., Trent, J., Lev, D., Pollock, R., Hao, X., Hunt, K. & Zhang, W., 2009, julkaisussa : Cancer Letters. 275, 1, s. 8 p


  22. Julkaistu

    Determining noisy attractors of delayed stochastic gene regulatory networks from multiple data sources

    Dai, X., Yli-Harja, O. & S. Ribeiro, A., 2009, julkaisussa : Bioinformatics. 25, 18, s. 2362-2368


  23. Julkaistu

    Tuning cell differentiation patterns and single cell dynamics by regulating proteins' functionalities in a toggle switch

    Dai, X., Healy, S., Yli-Harja, O. & S. Ribeiro, A., 2009, julkaisussa : Journal of Theoretical Biology. 261, 3, s. 441-448


  24. Julkaistu

    Effects of latanoprost in iris bioidentification

    Lamminen, H., Voipio, V., Manninen, T. & Huttunen, H., 2009, julkaisussa : Acta Ophthalmologica. 87, 5, s. 529-531


  25. Julkaistu

    Backward discrete wave field propagation modeling as an inverse problem: toward perfect reconstruction of wave field distributions

    Katkovnik, V., Migukin, A. & Astola, J., 2009, julkaisussa : Applied Optics. 48, 18, s. 3407-3423


  26. Julkaistu

    Towards a globalized software industry

    Jaakkola, H., 2009, julkaisussa : Acta Polytechnica Hungarica. 6, 5, s. 69-84


  27. Julkaistu

    QDD based method of automatic cirquit design for Xilinx Virtex-5 FPGA devices

    Stankovic, S. & Astola, J., 2009, julkaisussa : Journal of Multiple-Valued Logic and Soft Computing. 15, 5-6, s. 547-567


  28. The hOGGI Ser326Cys polymorphism and lung cancer risk: a meta-analysis

    Li, H. X., Hao, X. S., Zhang, W., Wei, Q. & Chen, K., 2008, julkaisussa : Cancer Epidemiology Biomarkers and Prevention. 17, 7, s. 1739-1745


  29. Evaluation of a commercialized in situ hybridization assay for detecting human paillomavirus DNA in tissue specimens from patients with cervical intraepithelial neoplasia and cervical carcinoma

    Guo, M., Gong, Y., Deavers, M., Silva, E., Jan, Y. J., Zhang, W., Cogdell, D., Lin, E., Luthra, R. & Sneige, N., 2008, julkaisussa : Journal of Clinical Microbiology. 46, 1, s. 274-280


  30. Julkaistu

    Transformational pattern system - some assembly required

    Siikarla, M. & Systä, T., 2008, julkaisussa : Electronical Notes in Theoretical Computing. 211, s. 63-74


  31. Gene expression profiling of diffuse large B-cell lymphoma supervised by CD21 expression

    Miyazaki, K., Yamaguchi, M., Suguro, M., Ogawa, S., Ueno, S., Ji, Y., Choi, W., Zhang, W., Katayama, N., Shiku, H. & Kobayashi, T., 2008, julkaisussa : British Journal of Haematology. 142, 4, s. 562-570


  32. Clinical, histopathologic, molecular, and therapeutic findings in a large kindred with gastrointestinal stromal tumor

    Kleinbaum, E. P., Lazar, A. J. F., Tamborini, E., Chen, L. L., Strong, L., Choi, H., Benjamin, R. S., Zhang, W. & Trent, J. C., 2008, julkaisussa : International Journal of Cancer. 122, 3, s. 711-718


  33. Mutual information in random Boolean models of regulatory networks

    S. Ribeiro, A., Kauffman, S. A., Lloyd-Price, J., Samuelsson, B. & Socolar, J. E. S., 2008, julkaisussa : Physical Review E. 77, 1, 011901, s. 10 p


  34. Evolution from heterozygous to homozygous KIT mutation in gastrointestinal stromal tumor correlates eith the mechanism of mitotic nondisjunction and significant tumor progression

    Chen, L. L., Holden, J. A., Choi, H., Zhu, J., Wu, E. F., Jones, K. A., Ward, J. H., Andtbacka, R., Randall, R. L., Scife, C. L., Hunt, K. K., Prieto, V. G., Raymond, A. K., Zhang, W., Trent, J. C., Benjamin, R. S. & Frazier, M. L., 2008, julkaisussa : Modern Pathology. 21, 7, s. 826-836


  35. Identification of ETS-like transcription factor 4 as a novel androgen receptor target in prostate cancer cells

    Makkonen, H., Jääskeläinen, T., Pitkänen-Arsiola, T., Rytinki, M., Waltering, K. K., Mättö, M., Visakorpi, T. & Palvimo, J. J., 2008, julkaisussa : Oncogene. 27, 36, s. 4865-4876


  36. Somatic mutation analysis of MYHI I in breast and prostate cancer

    Alhopuro, P., Karhu, A., Winqvist, R., Waltering, K., Visakorpi, T. & Aaltonen, L. A., 2008, julkaisussa : BMC Cancer. 8, 263, s. 5 p


  37. Julkaistu

    Pattern-based genetic model refinements in MDA

    Räihä, O., Koskimies, K., Mäkinen, E. & Systä, T., 2008, julkaisussa : Nordic Journal of Computing. 14, 4, s. 338-355


  38. IGFBP2 and IGFBP5 overexpression correaltes with the lymph node metastasis in T1 breasdt carcinomas

    Wang, H., Arun, B. K., Fuller, G. N., Zhang, W., Middleton, L. P. & Sahin, A. A., 2008, julkaisussa : Breast Journal. 14, 3, s. 261-267


  39. WWOX tumor suppressor gene

    Yang, J. & Zhang, W., 2008, julkaisussa : Histology and Histopathology. 23, 7, s. 877-882


  40. Julkaistu

    Quantifying local structure effects in network dynamics

    S. Ribeiro, A., Lloyd-Price, J., Kesseli, J., Häkkinen, A. & Yli-Harja, O., 2008, julkaisussa : Physical Review E. 78, 5, 056108, s. 10 p


  41. A cancer incidence survey in Tianjin - the third largest city in China - between 1981 and 2000

    Song, F. J., He, M., Li, H. X., Qian, B. Y., Wei, Q., Zhang, W., Chen, K. & Hao, X. S., 2008, julkaisussa : Cancer Causes and Control. 19, 5, s. 443-450


  42. Phosphorylation of Thr18 and Ser20 in Ad-p53-induced apoptosis

    nakamizo, A., Amano, T., Zhang, W., Zhang, X. Q., Dunmire, V., Ramdas, L., Liu, T. J., Shono, T., Sasaki, T., Benedict, W. F., Sawaya, R. & Lang, F. F., 2008, julkaisussa : Neuro-Oncology. 10, 3, s. 275-291


  43. Julkaistu

    Dynamics and evolution of stochastic bistable gene networks with sensisng in fluctuating environments

    S. Ribeiro, A., 2008, julkaisussa : Physical Review E. 78, 6, 061902, s. 9 p


  44. Androgen regulation of the androgen receptor coregulators

    Urbanucci, A., Waltering, K. K., Suikki, H. E., Helenius, M. A. & Visakorpi, T., 2008, julkaisussa : BMC Cancer. 8, 219, s. 10 p


  45. Julkaistu

    Effects of microarray noise on inference efficiency of a stochastic model of gene networks

    Charlebois, D. A., S. Ribeiro, A., Lehmussola, A., Lloyd-Price, J., Yli-Harja, O. & Kauffman, S. A., 2007, julkaisussa : WSEAS Transactions on Biology and Biomedicine. 4, 2, s. 15-21


  46. Differentially expressed genes between primary cancer and paired lymph node metastases predict clinical outcome of node-positive breast cancer patients

    Feng, Y., Sun, B., Li, X., Zhang, L., Niu, Y., Xiao, C., Fang, Z., Ning, L., Wang, Y., Cheng, J., Zhang, W. & Hao, X., 2007, julkaisussa : Breast Cancer Research and Treatment. 103, 3, s. 319-329


  47. In vitro expression levels of cell cycle checkpoint proteins are associated with cellular DNA repair capacity in peripheral blood lymphocytes: a multivariate analysis

    Fan, Y. H., Hu, Z. B., Li, C., Wang, L. E., Guo, Z., Qiao, Y., Zhang, L., Zhang, W., Mao, L. & Wei, Q. Y., 2007, julkaisussa : Journal of Proteome Research. 6, 4, s. 1560-1567


  48. Mutation analysis of aryl hydrocarbon receptor interacting protein (AIP) gene in colorectal, breast, and prostate cancers

    Georgitsi, M., Karhu, A., Winqvist, R., Visakorpi, T., Waltering, K., Vahteristo, P., Launonen, V. & Aaltonen, L. A., 2007, julkaisussa : British Journal of Cancer. 96, 2, s. 352-356


  49. Activation of polyamine catabolism by N1, N11-diethylnorspermine leads to cell death in glioblastoma

    Jiang, R., Choi, W., Khan, A., Hess, K., Gerner, W. W., Casero, R., Yung, W. K., Hamilton, S. R. & Zhang, W., 2007, julkaisussa : International Journal of Oncology. 31, 2, s. 431-440


  50. Expression level of insulin-like growth factor binding protein 5 mRNA is a prognostic factor for breast cancer

    Li, X., Cao, X., Zhang, W. & Feng, Y., 2007, julkaisussa : Cancer Science. 98, 10, s. 1592-1596


  51. SGN Sim, a stochastic genetic networks simulator

    S. Ribeiro, A. & Lloyd-Price, J., 2007, julkaisussa : Bioinformatics. 23, 6, s. 777-779


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