TUTCRIS - Tampereen teknillinen yliopisto



  1. 2006
  2. Mitochondrial respiration defects in cancer cells cause activation of Akt survival pathway through a redox-mediated mechanism

    Pelicano, H., Xu, R. H., Du, M., Feng, L., Sasaki, R., Carew, J. S., Hu, Y., Ramdas, L., Hu, L., Keating, M. J., Zhang, W., Plunkett, W. & Huang, P., 2006, julkaisussa : Journal of Cell Biology. 175, 6, s. 913-923


  3. Multiple description scalar quantization based 3D mesh coding

    Bici, M. O. & Akar, G. B., 2006, Proceedings of 2006 IEEE International Conference on Image Processing, ICIP 2006, Atlanta, Georgia, USA, 8-11 October 2006. s. 553-556


  4. Mutation screening of the androgen receptor promoter and untranslated regions in prostate cancer

    Waltering, K. K., Wallen, M. J., Tammela, T. L. J., Vessella, R. L. & Visakorpi, T., 2006, julkaisussa : Prostate. 66, 15, s. 1585-1591


  5. Overexpression of IGFBP5, but not IGFBP3, correlates with the histologic grade of human diffuse glioma: a tissue microarray and immunohistochemical study

    Wang, H., Zhang, W. & Fuller, G. N., 2006, julkaisussa : Technology in Cancer Research and Treatment. 5, 3, s. 195-200


  6. Julkaistu

    Performance Implications of Design Pattern Usage in Distributed Applications - Case Studies in J2EE and .NET.

    Rudzki, J. & Systä, T., 2006, ROSATEA '06 Proceedings of the ISSTA 2006 workshop on Role of software architecture for testing and analysis, Portland, Maine, USA, July 17-20, 2006. s. 1-11 11 Sivumäärä


  7. Presenting the past: A framework for faciliatating the externalization and articulation of user activities in desktop environment

    Wieroos, K. & Pekkola, S., 2006, Proceedings of the Annual Hawaii International Conference on System Sciences, 4-7 January 2006, Hawaii. s. 10 p


  8. Julkaistu

    Profile-Based Approach to Support Comprehension of Software Behavior

    Koskinen, J., Kettunen, M. & Systä, T., 2006, Proceedings of the 14th IEEE International Conference on Program Comprehension (ICPC 2006), 14-16 June 2006, Athens, Greece. s. 212-224


  9. RhG-CSF mobilized and apheresis-collected endothelial progenitor cells: a novel blood cell component for therapeutic vasculogenesis

    Korbling, M., Reuben, J. M., Gao, H., Lee, B. N., harris, D. M., Cogdell, D., Giralt, S. A., Khouri, I. F., Saliba, R. M., Champlin, R. E., Zhang, W. & Estrov, Z., 2006, julkaisussa : Transfusion. 46, s. 1795-1802


  10. Screening of genetic and expression alterations of SRC1 gene in prostate cancer

    Mäki, H. E., Waltering, K. K., Wallen, M. J., Martikainen, P. M., Tammela, T. L. J., van Weerden, W. M., Vessella, R. L. & Visakorpi, T., 2006, julkaisussa : Prostate. 66, 13, s. 1391-1398 8 Sivumäärä


  11. Shrew 1 gene, frequently deleted in oligodendrogliomas, functions to inhibit cell adhesion and migration

    McDonald, J. M., Dunlap, S., Cogdell, D., Dumnire, V., Wei, Q., Starzinski-Powitz, A., Sawaya, R., Bruner, J., Fuller, G. N., Aldape, K. & Zhang, W., 2006, julkaisussa : Cancer Biology and Therapy. 5, 3, s. 300-304


  12. Julkaistu

    Three-dimensional monochromatic light field synthesis with a deflectable mirror array device

    Ulusoy, E., Uzunov, V., Onural, L., Ozaktas, H. M. & Gotchev, A., 2006, Proceedigs of SPIE Photon Management II, Strasbourg, France, 20 April 2006. Sheridan, J. T. & Wyrowski, F. (toim.). s. 12 p


  13. Towards formalised end-user participation in information systems development process: grdging the gap between participatory desgin and ISD methodologies

    Pekkola, S., Kaarilahti, N. & Pohjola, P., 2006, 2006 Participatory Desgin Conference, PDC 2006, August 1-5, 2006, Trento, Italy. s. 21-30


  14. Transcriptional activation of the carboxylesterase 2 gene by the p53 pathway

    Choi, W., Cogdell, D., Feng, Y., Hamilton, S. R. & Zhang, W., 2006, julkaisussa : Cancer Biology and Therapy. 5, 11, s. 1450-1456


  15. Vasculogenic mimicry is associated with high tumor grade, invasion and metastasis, and shor survival in patients with hepatocellular carcinoma

    Sun, B. C., Zhang, S. W., Zhang, D. F., Du, J., Guo, H., Hao, X. L., Zhang, W. & Hao, X. S., 2006, julkaisussa : Oncology Report. 16, 4, s. 693-698


  16. 2007
  17. Activation of polyamine catabolism by N1, N11-diethylnorspermine leads to cell death in glioblastoma

    Jiang, R., Choi, W., Khan, A., Hess, K., Gerner, W. W., Casero, R., Yung, W. K., Hamilton, S. R. & Zhang, W., 2007, julkaisussa : International Journal of Oncology. 31, 2, s. 431-440


  18. Activation of polyamine catabolism by N1, N11-dietylnorspermine alters the cellular localization of mTOR and downregulates mTOR protein level in glioblastoma cells

    Jiang, R., Choi, W., Hu, L., Gerner, W. W., Hamilton, S. R. & Zhang, W., 2007, julkaisussa : Cancer Biology and Therapy. 6, 10, s. 1644-1648


  19. Julkaistu

    Applying template meta-programming techniques for a domain-specific visual language - an industrial experience report

    Karaila, M. & Systä, T., 2007, 29th International Conference on Software Engineering (ICSE '07), Minneapolis, MN, USA, 20-26 May 2007. s. 571-580


  20. Julkaistu

    Applying triple graph grammars for pattern-based workflow model transformations

    Lohmann, C., Greenyer, J., Jiang, J. & Systä, T., 2007, julkaisussa : Journal of Object Technology, Special Issue: TOOLS EUROPE 2007. 6, 9, s. 253-273


  21. Assessment of automated scintigram alignment in the stackgram domain for cardiac stress-rest SPECT studies

    Happonen, A. P. & Koskinen, M. O., 2007, julkaisussa : Computerized Medical Imaging and Graphics. 31, 8, s. 595-606


  22. Julkaistu

    Avustajaportti - Verkkopalvelu henkilökohtaisen avun välittämiseen

    Häkkinen, P., Kaikuvuo, I., Mäkelä, T., Mäkinen, R., Silius, K. & Tervakari, A-M., 2007


  23. CellLine, a stochastic cell lineage simulator

    S. Ribeiro, A., Charlebois, D. A. & Lloyd-Price, J., 2007, julkaisussa : Bioinformatics. 23, 24, s. 3409-3411


  24. Comparative analysis of genes regulated in acute myelomonocytic leukemia with and without inv(16)(p13q22) using microarray techniques, real-time PCR, immunohistochemistry, and flow cytometry immunophenotyping

    Sun, X., Zhang, W., Ramdas, L., Stivers, D. N., Jones, D. M., Kantarjian, H. M., Estey, E. H., Vadhan-Raj, S., Medeiros, L. J. & Bueso-Ramos, C. E., 2007, julkaisussa : Modern Pathology. 20, 8, s. 811-820


  25. Julkaistu

    Computational methods for estimation of cell cycle phase distributions of yeast cells

    Niemistö, A., Nykter, M., Aho, T., Jalovaara, H., Marjanen, K., Ahdesmäki, M., Ruusuvuori, P., Tiainen, M., Linne, M-L. & Yli-Harja, O., 2007, julkaisussa : Eurasip Journal on Bioinformatics and Systems Biology. 2007, 46150, s. 9 p


  26. Differentially expressed genes between primary cancer and paired lymph node metastases predict clinical outcome of node-positive breast cancer patients

    Feng, Y., Sun, B., Li, X., Zhang, L., Niu, Y., Xiao, C., Fang, Z., Ning, L., Wang, Y., Cheng, J., Zhang, W. & Hao, X., 2007, julkaisussa : Breast Cancer Research and Treatment. 103, 3, s. 319-329


  27. Distribution and viral load of eight oncogenic types of human papillomavirus (HPV) and HPV 16 integration status in cervical intraepithelial neoplasia and carcinoma

    Guo, M., Sneige, N., Silva, E., Jan, Y. J., Cogdell, D., Lin, E., Luthra, R. & Zhang, W., 2007, julkaisussa : Modern Pathology. 20, s. 256-266


  28. Julkaistu

    Effects of microarray noise on inference efficiency of a stochastic model of gene networks

    Charlebois, D. A., S. Ribeiro, A., Lehmussola, A., Lloyd-Price, J., Yli-Harja, O. & Kauffman, S. A., 2007, julkaisussa : WSEAS Transactions on Biology and Biomedicine. 4, 2, s. 15-21


  29. Expression level of insulin-like growth factor binding protein 5 mRNA is a prognostic factor for breast cancer

    Li, X., Cao, X., Zhang, W. & Feng, Y., 2007, julkaisussa : Cancer Science. 98, 10, s. 1592-1596


  30. Expression of receptor tyrosine kinases and apoptotic molecules in rhabdomyosarcoma: correlation with overall survival in 105 patients

    Armistead, P. M., Salganick, J., Roh, J. S., Steinert, D. M., Patel, S., Munsell, M., El-Naggar, A., Benjamin, R. S., Zhang, W. & Trent, J. C., 2007, julkaisussa : Cancer. 110, 10, s. 2293-2303


  31. Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas

    Price, N., Trent, J., El-Naggar, A., Cogdell, D., Taylor, E. E., Hunt, K., Pollock, R., Hood, L., Shmulevich, I. & Zhang, W., 2007, julkaisussa : Proceedings of the National Academy of Sciences of the United States of America. 104, s. 3414-3419


  32. Independent motile microplast formation correlates with glioma cell invasiveness

    Yount, G., Taft, R., Luu, T., Rachlin, K., Moore, D. & Zhang, W., 2007, julkaisussa : Journal of Neuro-Oncology. 81, 2, s. 113-121


  33. Insulin-like growth factor binding protein 2 promotes glioma development and progression

    Dunlap, S. M., Celestino, J., Wang, H., Jiang, R., Holland, E., Fueller, G. N. & Zhang, W., 2007, julkaisussa : Proceedings of the National Academy of Sciences of the United States of America. 104, 28, s. 11736-11741


  34. In vitro expression levels of cell cycle checkpoint proteins are associated with cellular DNA repair capacity in peripheral blood lymphocytes: a multivariate analysis

    Fan, Y. H., Hu, Z. B., Li, C., Wang, L. E., Guo, Z., Qiao, Y., Zhang, L., Zhang, W., Mao, L. & Wei, Q. Y., 2007, julkaisussa : Journal of Proteome Research. 6, 4, s. 1560-1567


  35. Lääketieteen kirjallisuustietokannat ja tiedonhaku

    Heikkinen, J., Isohanni, M. & Miettunen, J., 2007, julkaisussa : Suomen Lääkärilehti. 62, 22, s. 2156-2170

    Tutkimustuotos: Katsausartikkelivertaisarvioitu

  36. Learning and distributed systems development

    Pekkola, S., 2007, ECSCW'07 workshop on The Challenges of Collaborative Work in Global Software Development.


  37. MicroRNA expression profiling in prostate cancer

    Porkka, K. P., Pfeiffer, M. J., Waltering, K. K., Vessella, R. I., Tammela, T. L. J. & Visakorpi, T., 2007, julkaisussa : Cancer Research. 67, 13, s. 6130-6135


  38. Molecular approaches to resolve diagnostic dilemmas: the case of gastrointestinal stromal tumor and leiomyosarcoma

    Trent, J., Lazar, A. J. F. & Zhang, W., 2007, julkaisussa : Future Oncology. 3, 6, s. 629-637


  39. Mutation analysis of aryl hydrocarbon receptor interacting protein (AIP) gene in colorectal, breast, and prostate cancers

    Georgitsi, M., Karhu, A., Winqvist, R., Visakorpi, T., Waltering, K., Vahteristo, P., Launonen, V. & Aaltonen, L. A., 2007, julkaisussa : British Journal of Cancer. 96, 2, s. 352-356


  40. Noisy attractors and ergodic sets in models of gene regulatory networks

    S. Ribeiro, A. & Kauffman, S. A., 2007, julkaisussa : Journal of Theoretical Biology. 247, 4, s. 743-755


  41. Online interaction with in vitro neuronal networks

    Weihberger, O., Mikkonen, J. E. & Egert, U., 2007, Proceedings of the Seventh Göttingen Meeting of the German Neuroscience Society, 29 March - 1 April 2007, Göttingen, Germany. s. 1 p


  42. Julkaistu

    Open Source Contributions as Platform Specialization Units

    Hammouda, I. & Mikkonen, T., 2007, Proceedings of OSSPL 2007, Limerick, Ireland, June 2007.


  43. Julkaistu

    Polkka-blogit - Opetuskäyttöön TTY:lle räätälöity blogijärjestelmä

    Huhtamäki, J., Häkkinen, P., Kaikuvuo, I., Pohjanen, L., Rasi, E., Saarela, L., Silius, K., Tervakari, A-M. & Zetterberg, S., 2007


  44. Polymorphic TP53BP1 and TP53 gene interactions associated with risk of squamous cell carcinoma of the head and neck

    Chen, K. X., Hu, Z., Wang, L. E., Zhang, W., Sturgis, E. M. & Wei, Q., 2007, julkaisussa : Clinical Cancer Research. 13, 14, s. 4300-4305


  45. SGN Sim, a stochastic genetic networks simulator

    S. Ribeiro, A. & Lloyd-Price, J., 2007, julkaisussa : Bioinformatics. 23, 6, s. 777-779


  46. Single nucleotide polymorphisms at the TP53-binding or responsive promoter regions of BAX and BCL2 genes and risk of squamous cell carcinoma of the head and neck

    Chen, K., Hu, Z., Wang, L., Sturgis, E. M., El-Naggar, A. K., Zhang, W. & Wei, Q., 2007, julkaisussa : Carcinogenesis. 28, 9, s. 2008-2012


  47. Julkaistu
  48. Studying genetic regulatory networks at the molecular level: Delayed reaction stochastic models

    Zhu, R., S. Ribeiro, A., Salahub, D. & Kauffman, S. A., 2007, julkaisussa : Journal of Theoretical Biology. 246, 4, s. 725-745


  49. Studying utility of personal usage-history: A software tool for enabling empirical research

    Wideroos, K. & Pekkola, S., 2007, julkaisussa : Lecture Notes in Computer Science. 4550, s. 976-984


  50. Julkaistu

    Time-interleaved simulcast and redundant intra picture insertion for reducing tune-in delay in DVB-H

    Malamal Vadakital, V. K., Hannuksela, M. M. & Gabbouj, M., 2007, Proceedings of the 16th International Packet Video Workshop, Packet Video 2007, Lausanne, Swizerland, 12-13 November 2007. s. 10 p


  51. Towards industrial service business: Challenges in Designing ICT support for the networks of companies

    Hiippavuori, S., Hänninen, M., Pekkola, S. & Luostarinen, K., 2007, Proceedings of the 9th International Conference on Enterprise Information Systems ICEIS'07, June 12-16 2007.


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